Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-019-2879-1

https://doi.org/10.1186/s12859-019-2879-1

pcaExplorer: an R/Bioconductor package for interacting with RNA-seq principal components

Cited by: 146
Author(s): Fédérico Marini, Harald Binder
Published: over 5 years ago

Software Mentions 18

bioconductor: BatchQC
Batch Effects Quality Control Software
Papers that mentioned: 8
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: pcaExplorer
Interactive Visualization of RNA-seq Data Using a Principal Components Approach
Papers that mentioned: 26
bioconductor: SingleCellExperiment
S4 Classes for Single Cell Data
Papers that mentioned: 36
bioconductor: SummarizedExperiment
SummarizedExperiment container
Papers that mentioned: 52
cran: DT
A Wrapper of the JavaScript Library 'DataTables'
Papers that mentioned: 74
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: knitr
A General-Purpose Package for Dynamic Report Generation in R
Papers that mentioned: 157
cran: pkgdown
Make Static HTML Documentation for a Package
Papers that mentioned: 5
cran: rmarkdown
Dynamic Documents for R
Papers that mentioned: 38
cran: shinyAce
Ace Editor Bindings for Shiny
Papers that mentioned: 3
cran: shinyBS
Twitter Bootstrap Components for Shiny
Papers that mentioned: 15
cran: shinydashboard
Create Dashboards with 'Shiny'
Papers that mentioned: 22
cran: threejs
Interactive 3D Scatter Plots, Networks and Globes
Papers that mentioned: 7
pypi: d3heatmap
Python package to create interactive heatmap based on d3js.
Papers that mentioned: 26
pypi: Explorer
A module to control the Explorer HAT Raspberry Pi Addon Board
Papers that mentioned: 379
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071
pypi: Orange
Orange, a component-based data mining framework.
Papers that mentioned: 219