Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: BatchQC
https://packages.ecosyste.ms/registries/bioconductor.org/packages/BatchQC
Batch Effects Quality Control Software
1 version
Latest release: 7 months ago
18,776 downloads total
Papers Mentioning BatchQC 8
10.1186/s12859-019-2879-1
pcaExplorer: an R/Bioconductor package for interacting with RNA-seq principal componentsCited by: 146
Author(s): Fédérico Marini, Harald Binder
Software Mentions: 18
Published: almost 5 years ago
10.1038/s41598-021-81952-8
Gene co-expression network analysis reveals immune cell infiltration as a favorable prognostic marker in non-uterine leiomyosarcomaCited by: 12
Author(s): Mohammad Darzi, Saeid Gorgin, Keivan Majidzadeh‐A, Rezvan Esmaeili
Software Mentions: 7
Published: over 3 years ago
10.7554/eLife.57843
Increased longevity due to sexual activity in mole-rats is associated with transcriptional changes in the HPA stress axisCited by: 17
Author(s): Arne Sahm, Matthias Platzer, Philipp Koch, Yoshiyuki Henning, Martin Bens, Marco Groth, Hynek Burda, Sabine Begall, Saskia Ting, Moritz Goetz, Paul Van Daele, Magdalena Staniszewska, Jasmin Klose, Pedro Fragoso Costa, Steve Hoffmann, Karol Szafranski, Philip Dammann
Software Mentions: 7
Published: about 3 years ago
10.1002/cti2.1093
Machine learning applied to whole‐blood RNA‐sequencing data uncovers distinct subsets of patients with systemic lupus erythematosusCited by: 39
Author(s): William A. Figgett, Katherine Monaghan, Milica Ng, Monther Alhamdoosh, Eugene Maraskovsky, Nicholas J. Wilson, Alberta Hoi, Eric F Morand, Fabienne Mackay
Software Mentions: 5
Published: over 5 years ago
10.1038/s41380-020-0671-2
Inhibition of colony stimulating factor 1 receptor corrects maternal inflammation-induced microglial and synaptic dysfunction and behavioral abnormalitiesCited by: 36
Author(s): Seiko Ikezu, Hana Yeh, Jean-Christophe Delpech, Maya E. Woodbury, Alicia A. Van Enoo, Zhi Ruan, Sudhir Sivakumaran, Yang You, C. A. Holland, Teresa Guillamón-Vivancos, Asuka Yoshii-Kitahara, Mina Botros, Charlotte Madore, Pin-Hao Chao, Ankita Desani, Solaiappan Manimaran, Srinidhi Venkatesan Kalavai, W. Evan Johnson, Oleg Butovsky, Maria Medalla, Jennifer I. Luebke, Tsuneya Ikezu
Software Mentions: 5
Published: over 4 years ago
10.1186/s13287-020-01873-7
Transcriptome profiles acquired during cell expansion and licensing validate mesenchymal stromal cell lineage genesCited by: 8
Author(s): Danielle M. Wiese, Lorena R. Braid
Software Mentions: 3
Published: almost 4 years ago
10.1186/s12859-018-2263-6
Alternative empirical Bayes models for adjusting for batch effects in genomic studiesCited by: 45
Author(s): Yuqing Zhang, D. Graham Jenkins, Solaiappan Manimaran, W. Evan Johnson
Software Mentions: 3
Published: almost 6 years ago
10.1186/s12859-017-1912-5
DBNorm: normalizing high-density oligonucleotide microarray data based on distributionsCited by: 9
Author(s): Qingfei Meng, Daniel Catchpoole, David B. Skillicorn, Paul J. Kennedy
Software Mentions: 1
Published: over 6 years ago