pypi: d3heatmap | Projects | Ecosyste.ms: Papers

10.1186/s12859-019-2879-1

pcaExplorer: an R/Bioconductor package for interacting with RNA-seq principal components
Cited by: 146
Author(s): Fédérico Marini, Harald Binder
Software Mentions: 18
Published: over 5 years ago

10.1186/s12859-020-03819-5

ideal: an R/Bioconductor package for interactive differential expression analysis
Cited by: 18
Author(s): Fédérico Marini, Jan Linke, Harald Binder
Software Mentions: 17
Published: about 4 years ago

Impact of a natural disaster on access to care and biopsychosocial outcomes among Hispanic/Latino cancer survivors
Cited by: 15
Author(s): Mary Rodríguez-Rabassa, Ruthmarie Hernandez, Zindie Rodríguez, Claudia B. Colon-Echevarria, Lizette Maldonado, Nelmit Tollinchi, Estefanía Torres-Marrero, Adnil Mulero, Daniela Albors, Jaileene Pérez‐Morales, Idhaliz Flores, Julie Dutil, Heather Jim, Eida Castro, Guillermo N. Armaiz-Peña
Software Mentions: 14
Published: over 4 years ago

10.1186/s12859-016-1260-x

MicroScope: ChIP-seq and RNA-seq software analysis suite for gene expression heatmaps
Cited by: 14
Author(s): Bohdan B. Khomtchouk, John L. Hennessy, Claes Wahlestedt
Software Mentions: 12
Published: over 8 years ago

10.3389/fimmu.2016.00339

IMGT/StatClonotype for Pairwise Evaluation and Visualization of NGS IG and TR IMGT Clonotype (AA) Diversity or Expression from IMGT/HighV-QUEST
Cited by: 38
Author(s): Safa Aouinti, Véronique Giudicelli, Patrice Duroux, Dhafer Malouche, Sofia Kossida, Marie‐Paule Lefranc
Software Mentions: 11
Published: over 8 years ago

10.1093/bioinformatics/btv428

dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering
Cited by: 1,079
Author(s): Tal Galili
Software Mentions: 10
Published: over 9 years ago

10.1371/journal.pone.0176334

shinyheatmap: Ultra fast low memory heatmap web interface for big data genomics
Cited by: 97
Author(s): Bohdan B. Khomtchouk, John L. Hennessy, Claes Wahlestedt
Software Mentions: 7
Published: over 7 years ago

10.5334/jors.166

Web Tool for Navigating and Plotting SomaLogic ADAT Files
Cited by: 19
Author(s): Foo Cheung, Giovanna Fantoni, Maria Conner, Brian Sellers, Yuri Kotliarov, Julián Candia, Katherine E. Stagliano, Angélique Biancotto
Software Mentions: 6
Published: over 7 years ago

10.3389/fpls.2018.00857

Metabolite Profiles of Sugarcane Culm Reveal the Relationship Among Metabolism and Axillary Bud Outgrowth in Genetically Related Sugarcane Commercial Cultivars
Cited by: 21
Author(s): Danilo Alves Ferreira, Marina C. M. Martins, Adriana Cheavegatti-Gianotto, Monalisa Sampaio Carneiro, Rodrigo R. Amadeu, Juliana Aparecida Aricetti, L. D. Wolf, Hermann Paulo Hoffmann, Luís Guilherme F. de Abreu, Camila Caldana
Software Mentions: 6
Published: over 6 years ago

10.1186/s12864-019-6240-x

Didelphis albiventris: an overview of unprecedented transcriptome sequencing of the white-eared opossum
Cited by: 0
Author(s): Íria Gabriela Dias dos Santos, Tiago Antônio de Oliveira Mendes, Gerluza Aparecida Borges Silva, Amanda Maria Sena Reis, Cláudia Barros Monteiro-Vitorello, Patrícia Dayane Carvalho Schaker, Roberto Hirochi Herai, André Brait Carneiro Fabotti, Luiz Lehmann Coutinho, Érika Cristina Jorge
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-019-53023-6

Generation of a Comprehensive Transcriptome Atlas and Transcriptome Dynamics in Medicinal Cannabis
Cited by: 42
Author(s): Shivraj Braich, Rebecca C. Baillie, Larry S. Jewell, Germán Spangenberg, Noel O. I. Cogan
Software Mentions: 4
Published: about 5 years ago

10.3390/cancers12092671

Zoledronic Acid Abrogates Restraint Stress-Induced Macrophage Infiltration, PDGF-AA Expression, and Ovarian Cancer Growth
Cited by: 13
Author(s): Claudia B. Colon-Echevarria, Tatiana Ortiz, Lizette Maldonado, Melanie J. Hidalgo-Vargas, Jaileene Pérez‐Morales, Alexandra N. Aquino-Acevedo, Roberto Herrera-Noriega, Margarita Bonilla-Claudio, Eida Castro, Guillermo N. Armaiz-Pena
Software Mentions: 3
Published: over 4 years ago

10.3390/ijms22052553

Comprehensive Analysis of Correlations in the Expression of miRNA Genes and Immune Checkpoint Genes in Bladder Cancer Cells
Cited by: 3
Author(s): Przemyslaw Stempor, Dror Avni, Raya Leibowitz, Yechezkel Sidi, Maria Stępień, Tomasz Dzieciątkowski, Paula Dobosz
Software Mentions: 3
Published: almost 4 years ago

10.1186/s13024-018-0280-6

The Trem2 R47H Alzheimer’s risk variant impairs splicing and reduces Trem2 mRNA and protein in mice but not in humans
Cited by: 83
Author(s): Xianyuan Xiang, Thomas M. Piers, Benedikt Wefers, Kaichuan Zhu, Anna Mallach, Bettina Brunner, Gernot Kleinberger, Wilbur M. Song, Marco Colonna, Jochen Herms, Wolfgang Wurst, Jennifer M. Pocock, Christian Haass
Software Mentions: 3
Published: over 6 years ago

10.3390/genes10070503

Landscape of Overlapping Gene Expression in the Equine Placenta
Cited by: 8
Author(s): Pouya Dini, Jamie K. Norris, Hesham A. Ali, Shavahn C. Loux, Mariano Carossino, A. Esteller-Vico, Ernest Bailey, Theodore S. Kalbfleisch, Peter Daels, Barry A. Ball
Software Mentions: 3
Published: over 5 years ago

10.1186/s12870-020-02499-w

Genetic diversity of SAD and FAD genes responsible for the fatty acid composition in flax cultivars and lines
Cited by: 17
Author(s): Alexey A. Dmitriev, Parfait Kezimana, Tatiana A. Rozhmina, А. А. Жученко, Liubov V. Povkhova, Elena N. Pushkova, Roman O. Novakovskiy, Miroslav Pavelek, Gleb Vladimirov, Evgeny N. Nikolaev, Oxana Kovaleva, Yury Kostyukevich, Vitaliy Chagovets, Е. В. Романова, Anastasiya V. Snezhkina, Anna V. Kudryavtseva, George S. Krasnov, Nataliya V. Melnikova
Software Mentions: 3
Published: about 4 years ago

10.3389/fimmu.2019.02434

CD Maps—Dynamic Profiling of CD1–CD100 Surface Expression on Human Leukocyte and Lymphocyte Subsets
Cited by: 34
Author(s): Tomáš Kalina, Karel Fišer, Martín Pérez‐Andrés, Daniela Kužílková, Marta Cuenca, Sophinus J. W. Bartol, E Blanco, Pablo Engel, Menno C. van Zelm
Software Mentions: 3
Published: about 5 years ago

10.1038/srep43364

Ethylene-induced transcriptional and hormonal responses at the onset of sugarcane ripening
Cited by: 34
Author(s): Camila Pinto da Cunha, Guilherme Garcia Roberto, Renato Vicentini, Carolina Gimiliani Lembke, Gláucia Mendes Souza, Rafael Vasconcelos Ribeiro, Eduardo Caruso Machado, Ana Maria Magalhães Andrade Lagôa, Marcelo Menossi
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.ppat.1007950

Equine arteritis virus long-term persistence is orchestrated by CD8+ T lymphocyte transcription factors, inhibitory receptors, and the CXCL16/CXCR6 axis
Cited by: 19
Author(s): Mariano Carossino, Pouya Dini, Theodore S. Kalbfleisch, Alan T. Loynachan, Igor F. Canisso, R. Frank Cook, Peter J. Timoney, Udeni B. R. Balasuriya
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-97430-0

Comparative transcriptional profiling of canine acanthomatous ameloblastoma and homology with human ameloblastoma
Cited by: 6
Author(s): Santiago Peralta, G Duhamel, William P. Katt, Kristiina Heikinheimo, Andrew D. Miller, Faraz Ahmed, Angela L. McCleary‐Wheeler, Jennifer K. Grenier
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-94287-1

Silicon mitigates nutritional stress in quinoa (Chenopodium quinoa Willd.)
Cited by: 19
Author(s): Ana Paula de Assis Sales, Cid Naudi Silva Campos, Jonás Pereira de Souza, Dalila Lopes da Silva, Kamilla Silva Oliveira, Larissa Pereira Ribeiro Teodoro, Paulo Eduardo Teodoro
Software Mentions: 2
Published: over 3 years ago

10.1093/ve/veaa034

No evidence for distinct types in the evolution of SARS-CoV-2
Cited by: 88
Author(s): Oscar A MacLean, Richard Orton, Joshua B. Singer, David L. Robertson
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12885-018-4548-6

Obesity as risk factor for subtypes of breast cancer: results from a prospective cohort study
Cited by: 45
Author(s): Cina J. Nattenmüller, Mark Kriegsmann, Disorn Sookthai, Renée T. Fortner, Annika Steffen, Britta Walter, Theron Johnson, Jutta Kneisel, Verena Katzke, Manuela M. Bergmann, Hans‐Peter Sinn, Peter Schirmacher, Esther Herpel, Heiner Boeing, Rudolf Kaaks, Tilman Kühn
Software Mentions: 1
Published: over 6 years ago

10.1038/sdata.2016.112

Dataset of eye disease-related proteins analyzed using the unfolding mutation screen
Cited by: 11
Author(s): Caitlyn L. McCafferty, Yuri V. Sergeev
Software Mentions: 1
Published: about 8 years ago

10.1038/srep37298

In silico Mapping of Protein Unfolding Mutations for Inherited Disease
Cited by: 25
Author(s): Caitlyn L. McCafferty, Yuri V. Sergeev
Software Mentions: 1
Published: about 8 years ago

10.7150/ijms.49652

Gene signatures and prognostic analyses of the Tob/BTG pituitary tumor-transforming gene (PTTG) family in clinical breast cancer patients
Cited by: 15
Author(s): Chia-Chun Wu, Titus Ime Ekanem, Nam Nhut Phan, Do Thi Thuy Loan, Sz Ying Hou, Kuen-Haur Lee, Chih‐Yang Wang
Software Mentions: 1
Published: almost 5 years ago

Ecosyste.ms: Papers

Projects: pypi: d3heatmap

Papers Mentioning d3heatmap 26