Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-016-1260-x

https://doi.org/10.1186/s12859-016-1260-x

MicroScope: ChIP-seq and RNA-seq software analysis suite for gene expression heatmaps

Cited by: 14
Author(s): Bohdan B. Khomtchouk, John L. Hennessy, Claes Wahlestedt
Published: about 8 years ago

Software Mentions 12

bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: goseq
Gene Ontology analyser for RNA-seq and other length biased data
Papers that mentioned: 132
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: htmlwidgets
HTML Widgets for R
Papers that mentioned: 14
cran: networkD3
D3 JavaScript Network Graphs from R
Papers that mentioned: 37
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
cran: shiny
Web Application Framework for R
Papers that mentioned: 127
pypi: d3heatmap
Python package to create interactive heatmap based on d3js.
Papers that mentioned: 26
pypi: data
Work with unicode/non-unicode data from files or strings uniformly.
Papers that mentioned: 33
pypi: heatmap
Module to create heatmaps
Papers that mentioned: 285
pypi: shiny
A web development framework for Python.
Papers that mentioned: 127
pypi: stats
Calculator-style statistical functions
Papers that mentioned: 3,105