pypi: data | Projects | Ecosyste.ms: Papers

10.1371/journal.pcbi.1006242

Phylogeny-corrected identification of microbial gene families relevant to human gut colonization
Cited by: 29
Author(s): Patrick H. Bradley, Stephen Nayfach, Katherine S. Pollard
Software Mentions: 27
Published: about 6 years ago

10.3390/ani9070417

Talking to Dogs: Companion Animal-Directed Speech in a Stress Test
Cited by: 9
Author(s): Raffaela Lesch, Kurt Kotrschal, Iris Schöberl, Andrea Beetz, Judith Solomon, W. Tecumseh Fitch
Software Mentions: 25
Published: about 5 years ago

10.1186/s12859-017-1905-4

ADAGE signature analysis: differential expression analysis with data-defined gene sets
Cited by: 15
Author(s): Jie Tan, Matthew Huyck, Dongbo Hu, René A. Zelaya, Deborah A. Hogan, Casey S. Greene
Software Mentions: 25
Published: almost 7 years ago

10.1186/s13059-021-02295-1

gapseq: informed prediction of bacterial metabolic pathways and reconstruction of accurate metabolic models
Cited by: 77
Author(s): Johannes Zimmermann, Christoph Kaleta, Silvio Waschina
Software Mentions: 18
Published: over 3 years ago

10.18632/aging.103499

Multi-omics network analysis reveals distinct stages in the human aging progression in epidermal tissue
Cited by: 16
Author(s): Nicholas Holzscheck, Jörn Söhle, Boris Kristof, Elke Grönniger, Stefan Gallinat, Horst Wenck, Marc Winnefeld, Cassandra Falckenhayn, Lars Kaderali
Software Mentions: 18
Published: over 4 years ago

10.1186/s12859-018-2351-7

wTO: an R package for computing weighted topological overlap and a consensus network with integrated visualization tool
Cited by: 36
Author(s): Deisy Morselli Gysi, André Voigt, Tiago de Miranda Fragoso, Eivind Almaas, Katja Nowick
Software Mentions: 17
Published: almost 6 years ago

10.1073/pnas.2006024117

Diel variability of methane emissions from lakes
Cited by: 46
Author(s): Anna Sieczko, Nguyen Thanh Duc, Jonathan Schenk, Gustav Pajala, David Rudberg, Henrique O. Sawakuchi, David Bastviken
Software Mentions: 17
Published: about 4 years ago

10.12688/wellcomeopenres.16458.2

MethylDetectR: a software for methylation-based health profiling
Cited by: 14
Author(s): Robert F. Hillary, Riccardo E. Marioni
Software Mentions: 17
Published: over 3 years ago

10.1093/gigascience/giz061

LION/web: a web-based ontology enrichment tool for lipidomic data analysis
Cited by: 110
Author(s): Martijn R. Molenaar, Aike Jeucken, Tsjerk A. Wassenaar, Chris H.A. van de Lest, Jos F. Brouwers, J. Bernd Helms
Software Mentions: 16
Published: over 5 years ago

10.1371/journal.pgen.1009110

Unique genetic signatures of local adaptation over space and time for diapause, an ecologically relevant complex trait, in Drosophila melanogaster
Cited by: 45
Author(s): Priscilla A. Erickson, Cory A. Weller, Daniel Song, Alyssa Bangerter, Paul S. Schmidt, Alan O. Bergland
Software Mentions: 15
Published: almost 4 years ago

10.1186/s13007-018-0376-6

PhenoFly Planning Tool: flight planning for high-resolution optical remote sensing with unmanned areal systems
Cited by: 43
Author(s): Lukas Roth, Andreas Hund, Helge Aasen
Software Mentions: 15
Published: almost 6 years ago

10.7554/eLife.61980

Metabolomic profiling of rare cell populations isolated by flow cytometry from tissues
Cited by: 43
Author(s): Andrew W. DeVilbiss, Zhiyu Zhao, Misty S. Martin-Sandoval, Jessalyn M. Ubellacker, Alpaslan Tasdogan, Michalis Agathocleous, Thomas P. Mathews, Sean J. Morrison
Software Mentions: 13
Published: over 3 years ago

10.1371/journal.pone.0212956

Enhanced in vivo-imaging in medaka by optimized anaesthesia, fluorescent protein selection and removal of pigmentation
Cited by: 24
Author(s): Colin Lischik, Leonie Adelmann, Joachim Wittbrodt
Software Mentions: 13
Published: over 5 years ago

10.1186/s13227-020-0147-0

Elongation during segmentation shows axial variability, low mitotic rates, and synchronized cell cycle domains in the crustacean, Thamnocephalus platyurus
Cited by: 9
Author(s): Savvas J. Constantinou, Nicole Duan, Lisa M. Nagy, Ariel D. Chipman, Terri A. Williams
Software Mentions: 13
Published: over 4 years ago

10.1186/s12859-016-1260-x

MicroScope: ChIP-seq and RNA-seq software analysis suite for gene expression heatmaps
Cited by: 14
Author(s): Bohdan B. Khomtchouk, John L. Hennessy, Claes Wahlestedt
Software Mentions: 12
Published: almost 8 years ago

10.1038/s41598-020-60329-3

Neuroestrogen synthesis modifies neural representations of learned song without altering vocal imitation in developing songbirds
Cited by: 11
Author(s): Daniel M. Vahaba, Amelia Hecsh, Luke Remage‐Healey
Software Mentions: 11
Published: over 4 years ago

10.3389/fimmu.2021.641495

Mitochondrial Reactive Oxygen Species Regulate Immune Responses of Macrophages to Aspergillus fumigatus
Cited by: 15
Author(s): Rémi Hatinguais, Arnab Pradhan, Gordon D. Brown, Alistair J. P. Brown, Adilia Warris, Elena Shekhova
Software Mentions: 10
Published: over 3 years ago

10.3758/s13414-018-1538-3

Bottom-up attention capture with distractor and target singletons defined in the same (color) dimension is not a matter of feature uncertainty
Cited by: 11
Author(s): Hanna Weichselbaum, Ulrich Ansorge
Software Mentions: 9
Published: over 6 years ago

10.3390/md18120649

Sustainable Low-Volume Analysis of Environmental Samples by Semi-Automated Prioritization of Extracts for Natural Product Research (SeaPEPR)
Cited by: 6
Author(s): Riyanti, Michael Marner, Christoph Hartwig, Maria A. Patras, Stevy Imelda Murniati Wodi, Frets Jonas Rieuwpassa, Frans Gruber Ijong, Walter Balansa, Till F. Schäberle
Software Mentions: 9
Published: almost 4 years ago

10.1016/S2542-5196(21)00030-9

Identifying urban hotspots of dengue, chikungunya, and Zika transmission in Mexico to support risk stratification efforts: a spatial analysis
Cited by: 28
Author(s): Felipe Dzul-Manzanilla, Fabián Correa-Morales, Azael Che-Mendoza, Jorge Palacio-Vargas, Gustavo Sánchez-Tejeda, Jesús Felipe González-Roldán, Hugo López‐Gatell, Adriana E. Flores-Suárez, Héctor Gómez–Dantés, Giovanini Evelim Coelho, Haroldo Sergio da Silva Bezerra, Norma Pavía-Ruz, Audrey Lenhart, Pablo Manrique-Saide, Gonzalo M. Vázquez-Prokopec
Software Mentions: 8
Published: over 3 years ago

10.1186/s13059-021-02321-2

Identification of X-chromosomal genes that drive sex differences in embryonic stem cells through a hierarchical CRISPR screening approach
Cited by: 23
Author(s): Oriana Genolet, Anna A. Monaco, Ilona Dunkel, Michael Boettcher, Edda G. Schulz
Software Mentions: 7
Published: over 3 years ago

10.1098/rspb.2016.1587

Evolutionary heritage influences Amazon tree ecology
Cited by: 44
Author(s): Fernanda Coelho de Souza, Kyle G. Dexter, Oliver L. Phillips, Roel Brienen, Jérôme Chave, David Galbraith, Gabriela Lopez‐Gonzalez, Abel Monteagudo Mendoza, R. Toby Pennington, Lourens Poorter, Miguel Alexiades, Esteban Álvarez-Dávila, Ana Andrade, L. E. O. C. Aragão, Alejandro Araujo‐Murakami, E.J.M.M. Arets, Gerardo A. Aymard C, Christopher Baraloto, Jorcely Barroso, Damien Bonal, René Boot, José L. Camargo, J. A. Comiskey, Fernando Cornejo Valverde, Plínio Barbosa de Camargo, Anthony Di Fiore, Fernando Elias, Terry L. Erwin, Ted R. Feldpausch, Leandro Valle Ferreira, Nikolaos M. Fyllas, Emanuel Gloor, Bruno Hérault, R. Herrera, Níro Higuchi, Eurídice N. Honorio Coronado, Timothy J. Killeen, William F. Laurance, Susan G. Laurance, J. Lloyd, Thomas Ε. Lovejoy, Yadvinder Malhi, Leandro Maracahipes, Beatriz Schwantes Marimon, Casimiro Mendoza, Paulo S. Morandi, David Neill, Percy Núñez Vargas, Edmar Almeida de Oliveira, Eddie Lenza, Walter A. Palacios, M. C. Peñuela, John J. Pipoly, Nigel C. A. Pitman, Adriana Prieto, Carlos Alberto Quesada, Hirma Ramírez‐Angulo, Agustín Rudas, Kalle Ruokolainen, Rafael de Paiva Salomão, Marcos Silveira, Juliana Stropp, Hans ter Steege, Raquel Thomas-Caesar, P. van der Hout, Geertje M. F. van der Heijden, P.J. van der Meer, Rodolfo Vásquez, Simone A. Vieira, Emilio Vilanova Torre, Vincent Vos, Ophelia Wang, Kenneth R. Young, Roderick Zagt, Timothy R. Baker
Software Mentions: 5
Published: almost 8 years ago

10.7717/peerj.8128

Identification of prognostic gene signature associated with microenvironment of lung adenocarcinoma
Cited by: 57
Author(s): Yufeng Cheng, Hongwen Ma, Yuting Zhou
Software Mentions: 5
Published: almost 5 years ago

10.1093/infdis/jiy591

Transmission and Age Impact the Risk of Developing Febrile Malaria in Children with Asymptomatic Plasmodium falciparum Parasitemia
Cited by: 18
Author(s): Kevin Wamae, Juliana Wambua, George Nyangweso, Gabriel Mwambingu, Faith Osier, Francis M. Ndungu, Philip Bejon, Lynette Isabella Ochola‐Oyier
Software Mentions: 5
Published: almost 6 years ago

10.2196/17270

Efficacy of the Ascure Smoking Cessation Program: Retrospective Study
Cited by: 11
Author(s): Ayaka Kato, Tomoyuki Tanigawa, Kohta Satake, Akihiro Nomura
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-020-71428-6

Transcriptomic analysis of a Clostridium thermocellum strain engineered to utilize xylose: responses to xylose versus cellobiose feeding
Cited by: 4
Author(s): Albert Enrique Tafur Rangel, Trevor Croft, Andrés Fernando González Barrios, Luis H. Reyes, Pin‐Ching Maness, Katherine Chou
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0249773

Whole genome variation in 27 Mexican indigenous populations, demographic and biomedical insights.
Cited by: 8
Author(s): Israel Aguilar-Ordóñez, Fernando Pérez-Villatoro, Humberto Garcia‐Ortíz, Francisco Barajas‐Olmos, Judith Ballesteros-Villascán, Ram González-Buenfil, Cristóbal Fresno, Alejandro Garcíarrubio, Juan Carlos Fernández-López, Hugo Tovar, Enrique Hernández‐Lemus, Xavier Soberón, Enrique Morett
Software Mentions: 3
Published: over 3 years ago

10.1038/srep18965

Assessing the impact of humidex on HFMD in Guangdong Province and its variability across social-economic status and age groups
Cited by: 21
Author(s): Wangjian Zhang, Zhicheng Du, Dingmei Zhang, Shicheng Yu, Yong Huang
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0077050

Fn14•Trail Effectively Inhibits Hepatocellular Carcinoma Growth
Cited by: 12
Author(s): Alexandra Aronin, Shira Amsili, Tatyana B. Prigozhina, Kobi Tzdaka, Jacob Rachmilewitz, Noam Shani, Mark L. Tykocinski, Michal Dranitzki Elhalel
Software Mentions: 3
Published: almost 11 years ago

10.1107/S1600576721000674

<i>MATSAS</i>: a small-angle scattering computing tool for porous systems
Cited by: 6
Author(s): Amirsaman Rezaeyan, Vitaliy Pipich, Andreas Busch
Software Mentions: 1
Published: over 3 years ago

10.3390/molecules25173997

Wheat Bran Extract Regulates Mast Cell-Mediated Allergic Responses In Vitro and In Vivo
Cited by: 1
Author(s): Jae Yeon Lee, Eun‐Kyung Ahn, Ju-Hyoung Park, Joa Sub Oh
Software Mentions: 1
Published: about 4 years ago

10.1016/j.toxrep.2019.10.004

Antitumor activity of Cuphea ignea extract against benzo(a)pyrene-induced lung tumorigenesis in Swiss Albino mice
Cited by: 13
Author(s): Sherien K. Hassan, A. M. Mousa, Nermin M. El-Sammad, Abeer H. Abdel-Halim, Wagdy K. B. Khalil, Elsayed Ahmed Elsayed, Nayera Anwar, Michael Linscheid, Eman S. Moustafa, Amani N. Hashim, Mahmoud A.M. Nawwar
Software Mentions: 1
Published: over 5 years ago

10.3390/pharmaceutics12080776

Compatible Stability and Aerosol Characteristics of Atrovent® (Ipratropium Bromide) Mixed with Salbutamol Sulfate, Terbutaline Sulfate, Budesonide, and Acetylcysteine
Cited by: 6
Author(s): Yi-Ting Chen, Shangming Du, Zhirui Zhang, Wenxiu He, Enhao Lu, Rui Wang, Xianyi Sha, Yan Ma
Software Mentions: 1
Published: about 4 years ago

Ecosyste.ms: Papers

Projects: pypi: data

Papers Mentioning data 33