Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.18632/aging.103499

https://doi.org/10.18632/aging.103499

Multi-omics network analysis reveals distinct stages in the human aging progression in epidermal tissue

Cited by: 16
Author(s): Nicholas Holzscheck, Jörn Söhle, Boris Kristof, Elke Grönniger, Stefan Gallinat, Horst Wenck, Marc Winnefeld, Cassandra Falckenhayn, Lars Kaderali
Published: over 4 years ago

Software Mentions 18

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: GSVA
Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: minfi
Analyze Illumina Infinium DNA methylation arrays
Papers that mentioned: 506
cran: circlize
Circular Visualization
Papers that mentioned: 260
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: ggpubr
'ggplot2' Based Publication Ready Plots
Papers that mentioned: 856
cran: ggsci
Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2'
Papers that mentioned: 35
cran: Hmisc
Harrell Miscellaneous
Papers that mentioned: 1,000
cran: mlr
Machine Learning in R
Papers that mentioned: 64
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
cran: pROC
Display and Analyze ROC Curves
Papers that mentioned: 1,740
cran: randomForest
Breiman and Cutler's Random Forests for Classification and Regression
Papers that mentioned: 1,447
pypi: data
Work with unicode/non-unicode data from files or strings uniformly.
Papers that mentioned: 33
pypi: GSVA
Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893
pypi: mlr
Linear regression utility with inference tests, residual analysis, outlier visualization, multicollinearity test, and other features
Papers that mentioned: 64
pypi: table
Two-dimensional tables backed by Numpy with named rows and columns.
Papers that mentioned: 48