Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/gigascience/giz061

https://doi.org/10.1093/gigascience/giz061

LION/web: a web-based ontology enrichment tool for lipidomic data analysis

Cited by: 110
Author(s): Martijn R. Molenaar, Aike Jeucken, Tsjerk A. Wassenaar, Chris H.A. van de Lest, Jos F. Brouwers, J. Bernd Helms
Published: over 5 years ago

Software Mentions 16

bioconductor: topGO

Enrichment Analysis for Gene Ontology
Papers that mentioned: 652

bioconductor: xcms

LC-MS and GC-MS Data Analysis
Papers that mentioned: 68

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

cran: ggthemes

Extra Themes, Scales and Geoms for 'ggplot2'
Papers that mentioned: 69

cran: igraph

Network Analysis and Visualization
Papers that mentioned: 1,555

cran: pheatmap

Pretty Heatmaps
Papers that mentioned: 2,572

cran: reshape2

Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421

cran: RSQLite

SQLite Interface for R
Papers that mentioned: 27

cran: shinythemes

Themes for Shiny
Papers that mentioned: 6

cran: shinyTree

jsTree Bindings for Shiny
Papers that mentioned: 1

cran: shinyWidgets

Custom Inputs Widgets for Shiny
Papers that mentioned: 12

cran: visNetwork

Network Visualization using 'vis.js' Library
Papers that mentioned: 49

pypi: data

Work with unicode/non-unicode data from files or strings uniformly.
Papers that mentioned: 33

pypi: igraph

High performance graph data structures and algorithms
Papers that mentioned: 1,555

pypi: web

Web modules for CGI and WSGI web programming
Papers that mentioned: 44

pypi: xcms

calculated extended contact mode score provided the query and template protein-ligand structures
Papers that mentioned: 68