pypi: web | Projects | Ecosyste.ms: Papers

10.1093/gigascience/giz061

LION/web: a web-based ontology enrichment tool for lipidomic data analysis
Cited by: 110
Author(s): Martijn R. Molenaar, Aike Jeucken, Tsjerk A. Wassenaar, Chris H.A. van de Lest, Jos F. Brouwers, J. Bernd Helms
Software Mentions: 16
Published: over 5 years ago

10.1186/s12864-015-2356-9

QuickRNASeq lifts large-scale RNA-seq data analyses to the next level of automation and interactive visualization
Cited by: 33
Author(s): Shanrong Zhao, Li Xi, Jie Quan, Hualin Simon Xi, Ying Zhang, David von Schack, Michael S. Vincent, Baohong Zhang
Software Mentions: 10
Published: almost 9 years ago

10.1186/s12859-020-03722-z

PAWER: protein array web exploreR
Cited by: 4
Author(s): Dmytro Fishman, Ivan Kuzmin, Priit Adler, Jaak Vilo, Hedi Peterson
Software Mentions: 7
Published: over 4 years ago

10.1186/s12885-019-5993-6

Dynamic prediction of long-term survival in patients with primary gastric diffuse large B-cell lymphoma: a SEER population-based study
Cited by: 10
Author(s): Ju‐Li Lin, Lin Ji, Ping Li, Jian‐Wei Xie, Jia-Bin Wang, Jun Lü, Qi‐Yue Chen, Long‐Long Cao, Chang‐Ming Huang, Chao‐Hui Zheng
Software Mentions: 6
Published: over 5 years ago

10.3758/s13428-020-01449-6

A tool for efficient and accurate segmentation of speech data: announcing POnSS
Cited by: 2
Author(s): Joe Rodd, Caitlin Decuyper, Hans R. Bosker, L.F.M. ten Bosch
Software Mentions: 5
Published: over 4 years ago

10.3389/fgene.2021.653209

Exploring the Imbalance of Periodontitis Immune System From the Cellular to Molecular Level
Cited by: 11
Author(s): Long-Fei He, Lijuan Liu, Ti Li, Deshu Zhuang, Jiayin Dai, Bo Wang, Liangjia Bi
Software Mentions: 5
Published: almost 4 years ago

10.1038/srep22789

From morphology to biochemical state – intravital multiphoton fluorescence lifetime imaging of inflamed human skin
Cited by: 50
Author(s): Volker Huck, Christian Gorzelanny, Kai Thomas, Valentina Getova, Verena Niemeyer, Katharina Zens, Tim Unnerstall, Julia S. Feger, Maryam Fallah, Dieter Metze, Sonja Ständer, Thomas A. Luger, Karsten Koenig, Christian Meß, Stefan W. Schneider
Software Mentions: 4
Published: almost 9 years ago

10.1074/jbc.RA118.004767

Two distinct conformations of factor H regulate discrete complement-binding functions in the fluid phase and at cell surfaces
Cited by: 9
Author(s): Amy J. Osborne, Ruodan Nan, Arthur I. Miller, Jayesh S. Bhatt, Jayesh Gor, Stephen J. Perkins
Software Mentions: 4
Published: about 6 years ago

10.1186/1471-2148-14-139

Molecular evolution of NASP and conserved histone H3/H4 transport pathway
Cited by: 30
Author(s): Syed Nabeel‐Shah, Kanwal Ashraf, Ronald E. Pearlman, Jeffrey Fillingham
Software Mentions: 4
Published: over 10 years ago

10.1186/s12864-019-6404-8

EpiMOLAS: an intuitive web-based framework for genome-wide DNA methylation analysis
Cited by: 0
Author(s): Sheng-Yao Su, I-Hsuan Lu, Wen-Chih Cheng, Wei-Chun Chung, Pao‐Yang Chen, Jan-Ming Ho, Shu-Hwa Chen, Chung‐Yen Lin
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0249400

Digital inequalities in health information seeking behaviors and experiences in the age of web 2.0: A population-based study in Hong Kong
Cited by: 5
Author(s): Ningyuan Guo, Ziqiu Guo, Sheng Zhi Zhao, Sai Yin Ho, Daniel Yee Tak Fong, Agnes Yuen Kwan Lai, Sophia Chan, Man Ping Wang, Tai Hing Lam
Software Mentions: 3
Published: over 3 years ago

10.7717/peerj-cs.595

An experience selecting quality features of apps for people with disabilities using abductive approach to explanatory theory generation
Cited by: 0
Author(s): Andrés Larco, Carlos Montenegro, Cesar Yanez, Sergio Luján‐Mora
Software Mentions: 3
Published: over 3 years ago

10.1002/jmr.2696

The evolutionary characteristics and structural biology of Gallus toll-like receptor 21
Cited by: 6
Author(s): Hongping Wu, Hai Wang, Weibo Jiang, Zhengxing Lian
Software Mentions: 3
Published: about 7 years ago

10.3389/fmicb.2015.00199

Genomic characteristics and environmental distributions of the uncultivated Far-T4 phages
Cited by: 16
Author(s): Simon Roux, François Enault, Viviane Ravet, Olivier Pereira, Matthew B. Sullivan
Software Mentions: 3
Published: almost 10 years ago

10.1107/S160057671601517X

Atomistic modelling of scattering data in the Collaborative Computational Project for Small Angle Scattering (CCP-SAS)
Cited by: 66
Author(s): Stephen J. Perkins, David W. Wright, Hailiang Zhang, Emre Brookes, Jianhan Chen, Thomas C. Irving, Susan Krueger, David J. Barlow, Karen J. Edler, David J. Scott, Nicholas J. Terrill, Stephen M. King, Paul Butler, Joseph E. Curtis
Software Mentions: 3
Published: about 8 years ago

10.1038/s41418-018-0080-0

A kinome-wide RNAi screen identifies ALK as a target to sensitize neuroblastoma cells for HDAC8-inhibitor treatment
Cited by: 20
Author(s): Jing Shen, Sara Najafi, Sina Stäble, Johannes Fabian, E Koeneke, Fiona R. Kolbinger, Jagoda K. Wrobel, Benjamin Meder, Martin Distel, Tino Heimburg, Wolfgang Sippl, Manfred Jung, Heike Peterziel, D Kranz, Michael Boutros, Frank Westermann, Olaf Witt, Ina Oehme
Software Mentions: 3
Published: almost 7 years ago

10.1186/s40780-021-00213-y

A meta-analysis of observational studies on anticholinergic burden and fracture risk: evaluation of conventional burden scales
Cited by: 1
Author(s): Yukari Ogawa, Toshinori Hirai, Kiyoshi Mihara
Software Mentions: 2
Published: over 3 years ago

10.1016/j.jbc.2021.100995

Solution structures of human myeloma IgG3 antibody reveal extended Fab and Fc regions relative to the other IgG subclasses
Cited by: 8
Author(s): Valentina A. Spiteri, Margaret Goodall, James Doutch, Robert P. Rambo, Jayesh Gor, Stephen J. Perkins
Software Mentions: 2
Published: over 3 years ago

10.3390/molecules25245906

Possible Transmission Flow of SARS-CoV-2 Based on ACE2 Features
Cited by: 32
Author(s): Sk. Sarif Hassan, Shinjini Ghosh, Diksha Attrish, Pabitra Pal Choudhury, Alaa A. A. Aljabali, Bruce D. Uhal, Kenneth Lundström, Nima Rezaei, Vladimir N. Uversky, Murat Seyran, Damiano Pizzol, Parise Adadi, António Soares, Tarek Mohamed Abd El-Aziz, Ramesh Kandimalla, Murtaza M. Tambuwala, Gajendra Kumar Azad, Samendra P. Sherchan, Wagner Baetas‐da‐Cruz, Kazuo Takayama, Ãngel Serrano‐Aroca, Gaurav Chauhan, Giorgio Palù, Adam Brufsky
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-020-77547-4

Immunoinformatic design of a COVID-19 subunit vaccine using entire structural immunogenic epitopes of SARS-CoV-2
Cited by: 41
Author(s): Esmaeil Behmard, Bijan Soleymani, Ali Najafi, Ebrahim Barzegari
Software Mentions: 2
Published: about 4 years ago

10.1093/bioinformatics/btw482

Online interactive analysis of protein structure ensembles with Bio3D-web
Cited by: 29
Author(s): Lars Skjærven, Shashank Jariwala, Xin‐Qiu Yao, Barry J. Grant
Software Mentions: 2
Published: over 8 years ago

10.1186/1471-2105-13-36

miRTrail - a comprehensive webserver for analyzing gene and miRNA patterns to enhance the understanding of regulatory mechanisms in diseases
Cited by: 30
Author(s): Cédric Christian Laczny, Petra Leidinger, Jan Haas, Nicole Ludwig, Christina Backes, Andreas Gerasch, Michael Kaufmann, Britta Vogel, Hugo A. Katus, Benjamin Meder, Cord Stähler, Eckart Meese, Hans‐Peter Lenhof, Andreas Keller
Software Mentions: 2
Published: almost 13 years ago

10.1016/j.synbio.2020.05.005

Designing sgRNAs for CRISPR-BEST base editing applications with CRISPy-web 2.0
Cited by: 18
Author(s): Kai Blin, Simon J. Shaw, Yaojun Tong, Tilmann Weber
Software Mentions: 1
Published: over 4 years ago

10.1186/s12874-017-0416-3

Design considerations and analysis planning of a phase 2a proof of concept study in rheumatoid arthritis in the presence of possible non-monotonicity
Cited by: 7
Author(s): Feng Liu, Stephen J. Walters, Steven A. Julious
Software Mentions: 1
Published: about 7 years ago

10.1093/bioinformatics/btu349

HTML5 PivotViewer: high-throughput visualization and querying of image data on the web
Cited by: 6
Author(s): Stephen Taylor, Roger Noble
Software Mentions: 1
Published: over 10 years ago

10.1002/bit.27536

CRISPR interference of nucleotide biosynthesis improves production of a single‐domain antibody in Escherichia coli
Cited by: 11
Author(s): Jenny Marie Landberg, Naia Risager Wright, Tune Wulff, Markus J. Herrgård, Alex Toftgaard Nielsen
Software Mentions: 1
Published: over 4 years ago

10.3390/metabo11050287

Metabolic View on Human Healthspan: A Lipidome-Wide Association Study
Cited by: 14
Author(s): Justin Carrard, Héctor Gallart-Ayala, Denis Infanger, Tony Teav, Jonathan Wagner, Raphael Knaier, Flora Colledge, Lukas Streese, Karsten Königstein, Timo Hinrichs, Henner Hanssen, Julijana Ivanišević, Arno Schmidt‐Trucksäss
Software Mentions: 1
Published: over 3 years ago

10.1111/1751-7915.13396

Accelerated genome engineering of Pseudomonas putida by I‐SceI―mediated recombination and <scp>CRISPR</scp>‐Cas9 counterselection
Cited by: 87
Author(s): Nicolas T. Wirth, Ekaterina Kozaeva, Pablo I. Nikel
Software Mentions: 1
Published: almost 6 years ago

10.3390/pathogens10020099

Computational Design and Preliminary Serological Analysis of a Novel Multi-Epitope Vaccine Candidate Against Onchocerciasis and Related Filarial Diseases
Cited by: 15
Author(s): Robert Adamu Shey, Stephen Mbigha Ghogomu, Cabirou Mounchili Shintouo, Francis Nongley Nkemngo, Derrick Neba Nebangwa, Kevin Esoh, Ntang Emmaculate Yaah, Muyanui Manka’aFri, Joel Ebai Nguve, Roland Akwelle Ngwese, Ferdinand Ngale Njume, Fru Asa Bertha, Lawrence Ayong, Rose Njemini, Luc Vanhamme, Jacob Souopgui
Software Mentions: 1
Published: almost 4 years ago

10.7717/peerj.8795

An immunoinformatics approach for the design of a multi-epitope subunit vaccine for urogenital schistosomiasis
Cited by: 8
Author(s): Olugbenga Samson Onile, Adeyinka I Fadahunsi, Ameerah A. Adekunle, Bolaji Fatai Oyeyemi, Chiaka I. Anumudu
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0015604

Modeling Single Nucleotide Polymorphisms in the Human AKR1C1 and AKR1C2 Genes: Implications for Functional and Genotyping Analyses
Cited by: 14
Author(s): Jonathan W. Arthur, Juergen K.V. Reichardt
Software Mentions: 1
Published: almost 14 years ago

10.3390/cells9051197

An Innovative Lipidomic Workflow to Investigate the Lipid Profile in a Cystic Fibrosis Cell Line
Cited by: 21
Author(s): Michele Dei, Aı́da Zulueta, Alessandra Mingione, Anna Caretti, Riccardo Ghidoni, Paola Signorelli, Rita Paroni
Software Mentions: 1
Published: over 4 years ago

10.1007/s13300-018-0373-9

Effectiveness and Safety of a Novel Care Model for the Management of Type 2 Diabetes at 1 Year: An Open-Label, Non-Randomized, Controlled Study
Cited by: 244
Author(s): Sarah Hallberg, Amy L. McKenzie, Paul T. Williams, Nasir H. Bhanpuri, Anne L. Peters, Wayne W. Campbell, Tamara L. Hazbun, Brittanie M. Volk, James P. McCarter, Stephen D. Phinney, Jeff S. Volek
Software Mentions: 1
Published: almost 7 years ago

10.1007/s13300-018-0386-4

Author Correction: Effectiveness and Safety of a Novel Care Model for the Management of Type 2 Diabetes at 1 Year: An Open-Label, Non-Randomized, Controlled Study
Cited by: 7
Author(s): Sarah Hallberg, Amy L. McKenzie, Paul T. Williams, Nasir H. Bhanpuri, Anne L. Peters, Wayne W. Campbell, Tamara L. Hazbun, Brittanie M. Volk, James P. McCarter, Stephen D. Phinney, Jeff S. Volek
Software Mentions: 1
Published: almost 7 years ago

10.1002/ece3.7614

Comparative plastome analysis of Blumea, with implications for genome evolution and phylogeny of Asteroideae
Cited by: 27
Author(s): Abdullah Abdullah, Furrukh Mehmood, Abdur Rahim, Parviz Heidari, Ibrar Ahmed, Péter Poczai
Software Mentions: 1
Published: over 3 years ago

10.3390/genes10010023

Comparative Analysis of the Complete Chloroplast Genome Sequences of Three Closely Related East-Asian Wild Roses (Rosa sect. Synstylae; Rosaceae)
Cited by: 55
Author(s): Jihyeon Jeon, Seung‐Chul Kim
Software Mentions: 1
Published: almost 6 years ago

10.1186/s41155-020-00150-z

Social networks as tools for the prevention and promotion of health among youth
Cited by: 6
Author(s): José A. García del Castillo, Álvaro García del Castillo-López, Paulo C. Dias, Fernando García-Castillo
Software Mentions: 1
Published: over 4 years ago

10.1186/s12958-020-00576-1

Risk of hypertension in women with polycystic ovary syndrome: a systematic review, meta-analysis and meta-regression
Cited by: 45
Author(s): Mina Amiri, Fahimeh Ramezani Tehrani, Samira Behboudi‐Gandevani, Razieh Bidhendi Yarandi, Enrico Carmina
Software Mentions: 1
Published: almost 5 years ago

10.1038/sdata.2014.46

Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography
Cited by: 12
Author(s): Nicholas Weiler, Forrest Collman, Joshua T. Vogelstein, Randal Burns, Stephen J. Smith
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-019-54225-8

The effect of ω-3 polyunsaturated fatty acids on the liver lipidome, proteome and bile acid profile: parenteral versus enteral administration
Cited by: 10
Author(s): Kamila Bechyňská, Nikola Ďásková, Nikola Vrzáčková, Karel Harant, Marie Heczková, Katerina Podzimkova, Miriam Brátová, Helena Daňková, Zuzana Berková, Vít Kosek, Jaroslav Zelenka, Jana Hajšlová, Radislav Sedláček, Jiřı́ Suttnar, Alžběta Hlaváčková, Lenka Bartoňová, Monika Cahová
Software Mentions: 1
Published: about 5 years ago

10.1007/s12564-020-09658-6

Integrating competency-based education with a case-based or problem-based learning approach in online health sciences
Cited by: 16
Author(s): Ilse Johanna Sistermans
Software Mentions: 1
Published: about 4 years ago

10.1111/tbed.13738

Monitoring online media reports for early detection of unknown diseases: Insight from a retrospective study of COVID‐19 emergence
Cited by: 16
Author(s): Sarah Valentin, Alizé Mércier, Renaud Lancelot, Mathieu Roche, Elena Arsevska
Software Mentions: 1
Published: over 4 years ago

10.2196/19065

Interdisciplinary Mobile Health Model to Improve Clinical Care After Heart Transplantation: Implementation Strategy Study
Cited by: 6
Author(s): Mar Gomis‐Pastor, Sònia Mirabet, Eulàlia Roig, Laura López, Vicens Brossa, Elisabeth Galvez-Tugas, Esther Rodriguez-Murphy, Anna Feliu, Gerardo Ontiveros, Francesc García Cuyàs, Albert Salazar, M. A. Mangues
Software Mentions: 1
Published: about 4 years ago

10.7554/eLife.01892

RNA structures that resist degradation by Xrn1 produce a pathogenic Dengue virus RNA
Cited by: 162
Author(s): Erich G. Chapman, Stephanie L. Moon, Jeffrey Wilusz, Jeffrey S. Kieft
Software Mentions: 1
Published: over 10 years ago

Projects: pypi: web

Papers Mentioning web 44