cran: RSQLite | Projects | Ecosyste.ms: Papers

10.1186/1471-2156-15-81

Copy number polymorphisms near SLC2A9 are associated with serum uric acid concentrations
Cited by: 16
Author(s): Robert B. Scharpf, Lynn Mireles, Qiong Yang, Anna Köttgen, Ingo Ruczinski, Katalin Suszták, Eitan Halper-Stromberg, Adrienne Tin, Stephen Cristiano, Aravinda Chakravarti, Eric Boerwinkle, Caroline S. Fox, Josef Coresh, W. H. Linda Kao
Software Mentions: 56
Published: almost 11 years ago

10.12688/f1000research.17824.2

Enhancing gene set enrichment using networks
Cited by: 2
Author(s): Michael Prummer
Software Mentions: 51
Published: over 5 years ago

10.1371/journal.pcbi.1000227

Analyzing ChIP-chip Data Using Bioconductor
Cited by: 19
Author(s): Joern Toedling, Wolfgang Huber
Software Mentions: 39
Published: about 16 years ago

10.12688/f1000research.9973.2

BgeeDB, an R package for retrieval of curated expression datasets and for gene list expression localization enrichment tests
Cited by: 20
Author(s): Andrea Komljenović, Julien Roux, Julien Wollbrett, Marc Robinson‐Rechavi, Frederic Bastian
Software Mentions: 33
Published: over 6 years ago

10.1186/1751-0473-8-1

MmPalateMiRNA, an R package compendium illustrating analysis of miRNA microarray data
Cited by: 11
Author(s): Guy Brock, Partha Mukhopadhyay, Vasyl Pihur, Cynthia L. Webb, Robert M. Greene, M. Michele Pisano
Software Mentions: 24
Published: almost 12 years ago

10.1186/s13321-020-00477-w

patRoon: open source software platform for environmental mass spectrometry based non-target screening
Cited by: 76
Author(s): Rick Helmus, Thomas L. ter Laak, Annemarie P. van Wezel, P. de Voogt, Emma L. Schymanski
Software Mentions: 20
Published: almost 4 years ago

10.1186/s12864-021-07370-2

GCSscore: an R package for differential gene expression analysis in Affymetrix/Thermo-Fisher whole transcriptome microarrays
Cited by: 3
Author(s): Guy M. Harris, Shahroze Abbas, Michael F. Miles
Software Mentions: 17
Published: almost 4 years ago

10.1093/gigascience/giz061

LION/web: a web-based ontology enrichment tool for lipidomic data analysis
Cited by: 110
Author(s): Martijn R. Molenaar, Aike Jeucken, Tsjerk A. Wassenaar, Chris H.A. van de Lest, Jos F. Brouwers, J. Bernd Helms
Software Mentions: 16
Published: over 5 years ago

10.1186/s13073-021-00904-z

An atlas connecting shared genetic architecture of human diseases and molecular phenotypes provides insight into COVID-19 susceptibility
Cited by: 33
Author(s): Liuyang Wang, Thomas J Balmat, Alejandro L. Antonia, Florica J. Constantine, Ricardo Henao, Thomas W. Burke, Andy Ingham, Micah T. McClain, Ephraim L. Tsalik, Emily R Ko, Geoffrey S. Ginsburg, Mark DeLong, Xiling Shen, Christopher W. Woods, Elizabeth R. Hauser, Dennis C. Ko
Software Mentions: 13
Published: over 3 years ago

10.1002/ece3.7130

QuoVidi: An open‐source web application for the organization of large‐scale biological treasure hunts
Cited by: 8
Author(s): Guillaume Lobet, Charlotte Descamps, Lola Leveau, Alain Guillet, Jean-François Rees
Software Mentions: 12
Published: about 4 years ago

10.7554/eLife.49921

Combinatorial chromatin dynamics foster accurate cardiopharyngeal fate choices
Cited by: 21
Author(s): Claudia Racioppi, Keira A Wiechecki, Lionel Christiaen
Software Mentions: 11
Published: about 5 years ago

10.1186/1756-0500-3-10

A collection of bioconductor methods to visualize gene-list annotations
Cited by: 46
Author(s): Gang Feng, Pan Du, Nancy L. Krett, Michael A. Tessel, Steven T. Rosen, Warren A. Kibbe, Simon Lin
Software Mentions: 11
Published: almost 15 years ago

10.1371/journal.pone.0034594

Heterogeneity of Inflammatory and Cytokine Networks in Chronic Plaque Psoriasis
Cited by: 71
Author(s): William R. Swindell, Xianying Xing, Philip E. Stuart, Cynthia S. Chen, Abhishek Aphale, Rajan P. Nair, John J. Voorhees, James T. Elder, Andrew Johnston, Jóhann E. Guðjónsson
Software Mentions: 10
Published: almost 13 years ago

10.7717/peerj.11222

The postcranial skeleton of <i>Cerrejonisuchus improcerus</i> (Crocodyliformes: Dyrosauridae) and the unusual anatomy of dyrosaurids
Cited by: 1
Author(s): Isaure Scavezzoni, Valentin Fischer
Software Mentions: 10
Published: over 3 years ago

10.1186/s12859-019-2974-3

miRFA: an automated pipeline for microRNA functional analysis with correlation support from TCGA and TCPA expression data in pancreatic cancer
Cited by: 11
Author(s): Emmy Borgmästars, Hendrik A de Weerd, Zelmina Lubovac-Pilav, Malin Sund
Software Mentions: 8
Published: over 5 years ago

10.2196/11753

Description of Cardiological Apps From the German App Store: Semiautomated Retrospective App Store Analysis
Cited by: 21
Author(s): Urs‐Vito Albrecht, Gerd Hasenfuß, Ute von Jan
Software Mentions: 7
Published: about 6 years ago

10.1371/journal.pone.0171784

rEHR: An R package for manipulating and analysing Electronic Health Record data
Cited by: 14
Author(s): David A. Springate, Rosa Parisi, Iván Olier, David Reeves, Evangelos Kontopantelis
Software Mentions: 7
Published: almost 8 years ago

10.1371/journal.pcbi.1004140

Speeding Up Ecological and Evolutionary Computations in R; Essentials of High Performance Computing for Biologists
Cited by: 16
Author(s): Marco D. Visser, Sean M. McMahon, Cory Merow, Philip M. Dixon, Sydne Record, Eelke Jongejans
Software Mentions: 6
Published: almost 10 years ago

10.3389/fdata.2021.725095

NPARS—A Novel Approach to Address Accuracy and Reproducibility in Genomic Data Science
Cited by: 2
Author(s): Li Ma, Erich A. Peterson, Ik Jae Shin, Jason Muesse, Katy Marino, Matthew A. Steliga, Donald J. Johann
Software Mentions: 6
Published: over 3 years ago

10.1186/s12864-016-2397-8

Transcriptome analysis reveals differentially expressed genes associated with germ cell and gonad development in the Southern bluefin tuna (Thunnus maccoyii)
Cited by: 38
Author(s): Ido Bar, Scott F. Cummins, Abigail Elizur
Software Mentions: 4
Published: almost 9 years ago

10.3390/cancers12030632

Model-Based Integration Analysis Revealed Presence of Novel Prognostic miRNA Targets and Important Cancer Driver Genes in Triple-Negative Breast Cancers
Cited by: 6
Author(s): Masood Zaka, Chris W. Sutton, Yonghong Peng, Savas Konur
Software Mentions: 4
Published: almost 5 years ago

10.1186/1471-2164-15-548

The Arabidopsis Kinome: phylogeny and evolutionary insights into functional diversification
Cited by: 106
Author(s): Monika Zulawski, G Schulze, Rostyslav Braginets, Stefanie Hartmann, Waltraud X. Schulze
Software Mentions: 3
Published: over 10 years ago

10.1186/1753-6561-8-S1-S88

Gene analysis for longitudinal family data using random-effects models
Cited by: 3
Author(s): Jeanine J. Houwing-Duistermaat, Quinta Helmer, Bruna Balliu, Erik B. van den Akker, Roula Tsonaka, Hae‐Won Uh
Software Mentions: 3
Published: over 10 years ago

10.1038/s41597-020-0490-y

CeutaOPEN, individual-based field observations of breeding snowy plovers Charadrius nivosus
Cited by: 7
Author(s): Luke J. Eberhart-Phillips, Medardo Cruz‐López, Lydia Lozano-Angulo, Salvador Gómez del Ángel, Wendoly Rojas-Abreu, Marcos Bucio-Pacheco, Clemens Küpper
Software Mentions: 3
Published: over 4 years ago

10.1038/ismej.2017.114

High abundance and expression of transposases in bacteria from the Baltic Sea
Cited by: 47
Author(s): Theoden Vigil-Stenman, Karolina Ininbergs, Birgitta Bergman, Martin Ekman
Software Mentions: 3
Published: over 7 years ago

10.1186/s13756-021-00903-0

Emergence of nosocomial associated opportunistic pathogens in the gut microbiome after antibiotic treatment
Cited by: 13
Author(s): Isaac Raplee, Lacey Walker, Lei Xu, Anil Surathu, Ashok Chockalingam, Sharron Stewart, Han Xiao, Rodney Rouse, Zhihua Li
Software Mentions: 2
Published: almost 4 years ago

10.1186/1471-2105-14-19

SRAdb: query and use public next-generation sequencing data from within R
Cited by: 103
Author(s): Yuelin J. Zhu, Robert M. Stephens, Paul S. Meltzer, Sean Davis
Software Mentions: 2
Published: almost 12 years ago

Ecosyste.ms: Papers

Projects: cran: RSQLite

Papers Mentioning RSQLite 27