Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13321-020-00477-w

https://doi.org/10.1186/s13321-020-00477-w

patRoon: open source software platform for environmental mass spectrometry based non-target screening

Cited by: 76
Author(s): Rick Helmus, Thomas L. ter Laak, Annemarie P. van Wezel, P. de Voogt, Emma L. Schymanski
Published: almost 4 years ago

Software Mentions 20

bioconductor: CAMERA
Collection of annotation related methods for mass spectrometry data
Papers that mentioned: 429
bioconductor: mzR
parser for netCDF, mzXML, mzData and mzML and mzIdentML files (mass spectrometry data)
Papers that mentioned: 12
cran: circlize
Circular Visualization
Papers that mentioned: 260
cran: enviPick
Peak Picking for High Resolution Mass Spectrometry Data
Papers that mentioned: 4
cran: flexdashboard
R Markdown Format for Flexible Dashboards
Papers that mentioned: 4
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
cran: nontarget
Papers that mentioned: 2
cran: processx
Execute and Control System Processes
Papers that mentioned: 2
cran: RAMClustR
Mass Spectrometry Metabolomics Feature Clustering and Interpretation
Papers that mentioned: 11
cran: rcdk
Interface to the 'CDK' Libraries
Papers that mentioned: 30
cran: Rcpp
Seamless R and C++ Integration
Papers that mentioned: 152
cran: roxygen2
In-Line Documentation for R
Papers that mentioned: 14
cran: RSQLite
SQLite Interface for R
Papers that mentioned: 27
cran: UpSetR
A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets
Papers that mentioned: 319
cran: VennDiagram
Generate High-Resolution Venn and Euler Plots
Papers that mentioned: 626
cran: visNetwork
Network Visualization using 'vis.js' Library
Papers that mentioned: 49
pypi: Archive
Simple library that provides a common interface for extracting zip and tar archives.
Papers that mentioned: 363
pypi: DataAnalysis
Pacote de pré-processamento de texto
Papers that mentioned: 493
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555
pypi: plot
A matplotlib frontend executable using JSON file as user input
Papers that mentioned: 63