Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: mzR

https://packages.ecosyste.ms/registries/bioconductor.org/packages/mzR

parser for netCDF, mzXML, mzData and mzML and mzIdentML files (mass spectrometry data)
2 versions
Latest release: about 1 year ago
23 dependent packages
913,115 downloads total

Papers Mentioning mzR 12

The metaRbolomics Toolbox in Bioconductor and beyond
Cited by: 61
Author(s): Jan Stanstrup, Corey D. Broeckling, Rick Helmus, Nils Hoffmann, Ewy A. Mathé, Thomas Naake, Luca Nicolotti, Kristian Peters, Johannes Michael Rainer, Reza M. Salek, Tobias Schulze, Emma L. Schymanski, Michael A. Stravs, Etienne Thévenot, Hendrik Treutler, Ralf Weber, Egon Willighagen, Michael Witting, Steffen Neumann
Software Mentions: 92
Published: about 5 years ago

10.1002/pmic.201400392

Visualization of proteomics data using R and Bioconductor
Cited by: 46
Author(s): Laurent Gatto, Lisa M. Breckels, Thomas Naake, Sebastian Gibb
Software Mentions: 62
Published: over 9 years ago

10.1186/s13321-020-00477-w

patRoon: open source software platform for environmental mass spectrometry based non-target screening
Cited by: 76
Author(s): Rick Helmus, Thomas L. ter Laak, Annemarie P. van Wezel, P. de Voogt, Emma L. Schymanski
Software Mentions: 20
Published: almost 4 years ago

10.1136/jitc-2020-002071

HLA Ligand Atlas: a benign reference of HLA-presented peptides to improve T-cell-based cancer immunotherapy
Cited by: 109
Author(s): Ana Marcu, Leon Bichmann, Lèon Kuchenbecker, Daniel J. Kowalewski, Lena Katharina Freudenmann, Linus Backert, Lena Mühlenbruch, András Szolek, Maren Lübke, Philipp Wagner, Tobias Engler, Sabine Matovina, Jian Wang, Mathias Hauri-Hohl, Thierry Martin, Konstantina Kapolou, Juliane S. Walz, Julia Velz, Holger Moch, Luca Regli, Manuela Silginer, Michael Weller, Markus Löffler, Florian Erhard, Andreas Schlösser, Oliver Kohlbacher, Stefan Stevanović, Hans Georg Rammensee, Marian C. Neidert
Software Mentions: 8
Published: over 3 years ago

10.3390/cells10051163

Anthracyclins Increase PUFAs: Potential Implications in ER Stress and Cell Death
Cited by: 9
Author(s): David Balgoma, Fredrik Kullenberg, Carlemi Calitz, Maria Kopsida, Femke Heindryckx, Hans Lennernäs, Mikael Hedeland
Software Mentions: 4
Published: over 3 years ago

10.1007/s13361-016-1476-z

Quantification of Lysine Acetylation and Succinylation Stoichiometry in Proteins Using Mass Spectrometric Data-Independent Acquisitions (SWATH)
Cited by: 61
Author(s): Jesse G. Meyer, Alexandria K. D’Souza, Dan Sørensen, Matthew J. Rardin, Alan J. Wolfe, Bradford W. Gibson, Birgit Schilling
Software Mentions: 4
Published: about 8 years ago

10.3390/ijms21124376

Metabolomics Analysis Reveals Tissue-Specific Metabolite Compositions in Leaf Blade and Traps of Carnivorous Nepenthes Plants
Cited by: 12
Author(s): Alberto Dávila-Lara, Carlos E. Rodríguez López, Sarah E. O’Connor, Axel Mithöfer
Software Mentions: 3
Published: over 4 years ago

10.1128/mSystems.00077-17

Impacts of Penicillin Binding Protein 2 Inactivation on β-Lactamase Expression and Muropeptide Profile in <i>Stenotrophomonas maltophilia</i>
Cited by: 12
Author(s): Yi Huang, Yu Wang, Yi-Hsiu Lin, Chin Lin, Yi Tsung Lin, Cheng-Chih Hsu, Tsuey Ching Yang
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0125108

Fast and Efficient XML Data Access for Next-Generation Mass Spectrometry
Cited by: 17
Author(s): Hannes L. Röst, Uwe Schmitt, Ruedi Aebersold, Lars Malmström
Software Mentions: 1
Published: over 9 years ago

10.3390/molecules24101917

Comparison of Four Extraction Techniques for the Evaluation of Volatile Compounds in Spray-Dried New Zealand Sheep Milk
Cited by: 20
Author(s): Ryan High, Phil Bremer, Biniam Kebede, Graham T. Eyres
Software Mentions: 1
Published: over 5 years ago

10.1002/jms.3928

MathIOmica-MSViewer: a dynamic viewer for mass spectrometry files for Mathematica
Cited by: 1
Author(s): Raeuf Roushangar, George I. Mias
Software Mentions: 1
Published: over 7 years ago

10.3390/metabo9050101

A Comprehensive Plasma Metabolomics Dataset for a Cohort of Mouse Knockouts within the International Mouse Phenotyping Consortium
Cited by: 37
Author(s): Dinesh Kumar Barupal, Ying Zhang, Tong Shen, Sili Fan, Bryan S. Roberts, Patrick Fitzgerald, Benjamin Wancewicz, Luis Valdiviez, Gert Wohlgemuth, Gregory Byram, Ying Yng Choy, Bennett Haffner, Megan R. Showalter, Arpana Vaniya, Clayton Bloszies, Jacob Folz, Tobias Kind, Ann M. Flenniken, Colin McKerlie, Lauryl M. J. Nutter, Kent Lloyd, Oliver Fiehn
Software Mentions: 1
Published: over 5 years ago