Ecosyste.ms: Papers

10.1186/s13321-020-00477-w

patRoon: open source software platform for environmental mass spectrometry based non-target screening
Cited by: 76
Author(s): Rick Helmus, Thomas L. ter Laak, Annemarie P. van Wezel, P. de Voogt, Emma L. Schymanski
Software Mentions: 20
Published: over 3 years ago

10.3390/md18120649

Sustainable Low-Volume Analysis of Environmental Samples by Semi-Automated Prioritization of Extracts for Natural Product Research (SeaPEPR)
Cited by: 6
Author(s): Riyanti, Michael Marner, Christoph Hartwig, Maria A. Patras, Stevy Imelda Murniati Wodi, Frets Jonas Rieuwpassa, Frans Gruber Ijong, Walter Balansa, Till F. Schäberle
Software Mentions: 9
Published: over 3 years ago

10.1038/s41598-020-76256-2

Selection of sponge-associated bacteria with high potential for the production of antibacterial compounds
Cited by: 11
Author(s): Riyanti, Walter Balansa, Yang Liu, Abha Sharma, Sanja Mihajlović, Christoph Hartwig, Benedikt Leis, Frets Jonas Rieuwpassa, Frans Gruber Ijong, Heike Wägele, Gabriele M. König, Till F. Schäberle
Software Mentions: 8
Published: over 3 years ago

10.3389/fmicb.2020.00494

A Multi-Omics Analysis Suggests Links Between the Differentiated Surface Metabolome and Epiphytic Microbiota Along the Thallus of a Mediterranean Seaweed Holobiont
Cited by: 27
Author(s): Benoît Paix, Nathan Carriot, Raphaëlle Barry‐Martinet, Stéphane Greff, Benjamin Misson, Jean‐François Briand, Gérald Culioli
Software Mentions: 8
Published: about 4 years ago

10.1038/srep29033

Natural variation of root exudates in Arabidopsis thaliana-linking metabolomic and genomic data
Cited by: 130
Author(s): Susann Mönchgesang, Nadine Strehmel, Stephan Schmidt, Lore Westphal, Franziska Taruttis, E. Müller, Siska Herklotz, Steffen Neumann, Dierk Scheel
Software Mentions: 7
Published: almost 8 years ago

10.1186/s12859-016-0970-4

MetICA: independent component analysis for high-resolution mass-spectrometry based non-targeted metabolomics
Cited by: 22
Author(s): Youzhong Liu, Kirill S. Smirnov, Marianna Lucio, Régis D. Gougeon, Hervé Alexandre, Philippe Schmitt‐Kopplin
Software Mentions: 7
Published: about 8 years ago

10.1038/s41598-018-37512-8

Sheathless CE-MS based metabolic profiling of kidney tissue section samples from a mouse model of Polycystic Kidney Disease
Cited by: 22
Author(s): Elena Sánchez-López, Guinevere S. M. Kammeijer, Antonio L. Crego, Marı́a Luisa Marina, Rawi Ramautar, Dorien J.M. Peters, Oleg A. Mayboroda
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0058572

Small Hydrophobic Protein of Human Metapneumovirus Does Not Affect Virus Replication and Host Gene Expression In Vitro
Cited by: 19
Author(s): Miranda de Graaf, Sander Herfst, Jamil Aarbiou, Peter C. Burgers, Fatiha Zaaraoui-Boutahar, M Bijl, Wilfred F. J. van IJcken, Eefje J. A. Schrauwen, Albert D. M. E. Osterhaus, Theo M. Luider, Bob J. Scholte, Ron A. M. Fouchier, Arno C. Andeweg
Software Mentions: 5
Published: about 11 years ago

10.7554/eLife.53008

Functional heterogeneity of lymphocytic patterns in primary melanoma dissected through single-cell multiplexing
Cited by: 39
Author(s): Francesca Maria Bosisio, Asier Antoranz, Yannick Van Herck, Maddalena M. Bolognesi, Lukas Marcelis, Clizia Chinello, Jasper Wouters, Fulvio Magni, Leonidas G. Alexopoulos, Marguerite Stas, Veerle Boecxstaens, Oliver Bechter, Giorgio Cattoretti, Joost van den Oord
Software Mentions: 5
Published: over 4 years ago

10.3389/fpls.2016.00524

Comparative Analysis of Membrane Lipids in Psychrophilic and Mesophilic Freshwater Dinoflagellates
Cited by: 20
Author(s): Andrea Anesi, Ulrike Obertegger, Gert H. Hansen, Assaf Sukenik, Giovanna Flaim, Graziano Guella
Software Mentions: 4
Published: about 8 years ago

10.3389/fmicb.2020.597944

Wine Terroir and the Soil Bacteria: An Amplicon Sequencing–Based Assessment of the Barossa Valley and Its Sub-Regions
Cited by: 8
Author(s): Jia Zhou, Timothy R. Cavagnaro, Roberta De Bei, Tiffanie M. Nelson, J. Stephen, Andrew Metcalfe, Matthew Gilliham, James Breen, Cassandra Collins, Carlos M. Rodríguez López
Software Mentions: 4
Published: over 3 years ago

10.3390/antibiotics10030325

The Phosin PptA Plays a Negative Role in the Regulation of Antibiotic Production in Streptomyces lividans
Cited by: 7
Author(s): Noriyasu Shikura, Emmanuelle Darbon, Catherine Esnault, Ariane Deniset‐Besseau, Delin Xu, Clara Lejeune, Éric Jacquet, Naïma Nhiri, Laila Sago, David Cornu, Sebastiaan Werten, Cécile Martel, Marie‐Joëlle Virolle
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pone.0216679

Seasonal adaptations of the hypothalamo-neurohypophyseal system of the dromedary camel
Cited by: 8
Author(s): Fatma Zohra Djazouli Alim, Elena V. Romanova, Yea Ling Tay, Ahmad Yamin bin Abdul Rahman, Kok‐Gan Chan, Kar‐Wai Hong, Mark F. Rogers, Bruce R. Southey, Michael Greenwood, André Souza Mecawi, Mohammad Rais Mustafa, Nicole Mahy, Colin Campbell, José Antunes‐Rodrigues, Jonathan V. Sweedler, David Murphy, Charles C.T. Hindmarch
Software Mentions: 4
Published: almost 5 years ago

10.1186/s13068-020-01779-9

Removal of N-linked glycans in cellobiohydrolase Cel7A from Trichoderma reesei reveals higher activity and binding affinity on crystalline cellulose
Cited by: 14
Author(s): Bartłomiej M Kołaczkowski, Kay Schaller, Trine Holst Sørensen, Günther H.J. Peters, Kenneth Jensen, Kristian B. R. M. Krogh, Peter Westh
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0119627

Phylogenomic Analyses of Echinodermata Support the Sister Groups of Asterozoa and Echinozoa
Cited by: 81
Author(s): Adrian Reich, Casey W. Dunn, Koji Akasaka, Gary M. Wessel
Software Mentions: 3
Published: about 9 years ago

10.1128/mSystems.00635-19

Metabolome-Informed Microbiome Analysis Refines Metadata Classifications and Reveals Unexpected Medication Transfer in Captive Cheetahs
Cited by: 12
Author(s): Julia M. Gauglitz, James T. Morton, Anupriya Tripathi, Shalisa Hansen, Michele Gaffney, Carolina S. Carpenter, Kelly C. Weldon, Riya Shah, Amy Parampil, Andrea Fidgett, Austin D. Swafford, Rob Knight, Pieter C. Dorrestein
Software Mentions: 3
Published: about 4 years ago

10.1038/srep34453

A capillary electrophoresis coupled to mass spectrometry pipeline for long term comparable assessment of the urinary metabolome
Cited by: 28
Author(s): Franck Boizard, Valérie Brunchault, Panagiotis Moulos, Benjamin Breuil, Julie Klein, Nadia Lounis, Cécile Caubet, Stéphanie Tellier, Jean-Loup Bascands, Stéphane Decramer, Joost P. Schanstra, Bénédicte Buffin-Meyer
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-017-17500-0

Blood plasma/IgG N-glycome biosignatures associated with major depressive disorder symptom severity and the antidepressant response
Cited by: 24
Author(s): Dong Ik Park, Jerko Štambuk, Genadij Razdorov, Maja Pučić‐Baković, Daniel Martins-de-Souza, Gordan Lauc, Christoph W. Turck
Software Mentions: 3
Published: over 6 years ago

10.1186/s12862-020-01637-0

Lipidome analysis of milk composition in humans, monkeys, bovids, and pigs
Cited by: 11
Author(s): Aleksandra Mitina, Pavel Mazin, Anna Vanyushkina, Nikolay Anikanov, Waltraud Mair, Songlin Guo, Philipp Khaitovich
Software Mentions: 3
Published: almost 4 years ago

10.3390/toxins10050177

Proteopeptidomic, Functional and Immunoreactivity Characterization of Bothrops moojeni Snake Venom: Influence of Snake Gender on Venom Composition
Cited by: 45
Author(s): Fernanda Gobbi Amorim, Tássia R. Costa, Dominique Baiwir, Edwin De Pauw, Loïc Quinton, Suely Vilela Sampaio
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-020-78439-3

Production of the antimicrobial compound tetrabromopyrrole and the Pseudomonas quinolone system precursor, 2-heptyl-4-quinolone, by a novel marine species Pseudoalteromonas galatheae sp. nov.
Cited by: 14
Author(s): Sara Skøtt Paulsen, Thomas Isbrandt, Markus Kirkegaard, Yannick Buijs, Mikael Lenz Strube, Eva C. Sonnenschein, Thomas Ostenfeld Larsen, Lone Gram
Software Mentions: 3
Published: over 3 years ago

10.1038/s42003-021-02518-y

14-3-3 proteins inactivate DAPK2 by promoting its dimerization and protecting key regulatory phosphosites
Cited by: 18
Author(s): Matej Horvath, Olívia Petrvalská, Petr Heřman, Veronika Obšilová, Tomáš Obšil
Software Mentions: 3
Published: almost 3 years ago

10.3390/foods10092160

Non-Targeted LC-MS Metabolomics Approach towards an Authentication of the Geographical Origin of Grain Maize (Zea mays L.) Samples
Cited by: 10
Author(s): David Schütz, Elisabeth Achten, Marina Creydt, Janet Riedl, Markus Fischer
Software Mentions: 3
Published: over 2 years ago

10.1107/S2053230X15018336

Crystallization and X-ray diffraction studies of a complete bacterial fatty-acid synthase type I
Cited by: 8
Author(s): Mathias Enderle, A.A. McCarthy, Karthik S. Paithankar, Martin Grininger
Software Mentions: 3
Published: over 8 years ago

10.3390/insects11090634

Diversity and Regulation of S-Adenosylmethionine Dependent Methyltransferases in the Anhydrobiotic Midge
Cited by: 4
Author(s): Ruslan Deviatiiarov, R. T. Ayupov, Alexander Laikov, Elena Shagimardanova, Takahiro Kikawada, Oleg Gusev
Software Mentions: 3
Published: over 3 years ago

10.1107/S2059798321003533

Crystallographic fragment screening-based study of a novel FAD-dependent oxidoreductase from Chaetomium thermophilum
Cited by: 4
Author(s): Leona Švecová, Lars Østergaard, Tereza Skálová, Kirk Schnorr, T. Kovaľ, Petr Kolenko, Jan Stránský, David Sedlák, Jarmila Dušková, Mária Trundová, Jindřich Hašek, Jan Dohnálek
Software Mentions: 3
Published: about 3 years ago

10.1371/journal.pone.0206914

Regulating transcriptional activity by phosphorylation: A new mechanism for the ARX homeodomain transcription factor
Cited by: 11
Author(s): Tessa Mattiske, May H. Tan, Oliver Dearsley, Desiree Cloosterman, Charles S. Hii, Jozef Gécz, Cheryl Shoubridge
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-015-1354-2

The central nervous system transcriptome of the weakly electric brown ghost knifefish (Apteronotus leptorhynchus): de novo assembly, annotation, and proteomics validation
Cited by: 20
Author(s): Joseph P. Salisbury, Ruxandra F. Sîrbulescu, Ben Moran, Jared R. Auclair, Günther K.H. Zupanc, Jeffrey N. Agar
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.ppat.1001328

A Novel Toxoplasma gondii Nuclear Factor TgNF3 Is a Dynamic Chromatin-Associated Component, Modulator of Nucleolar Architecture and Parasite Virulence
Cited by: 36
Author(s): Alejandro Olguin-Lamas, Edwige Madec, Agnès Hovasse, Elisabeth Werkmeister, Isabelle Callebaut, Christian Slomianny, Stéphane Delhaye, Thomas Mouveaux, Christine Schaeffer-Reiss, Alain Van Dorsselaer, Stanislas Tomavo
Software Mentions: 3
Published: about 13 years ago

10.3390/molecules26092769

Honey Phenolic Compound Profiling and Authenticity Assessment Using HRMS Targeted and Untargeted Metabolomics
Cited by: 28
Author(s): Georgios Koulis, Aristeidis S. Tsagkaris, Reza Aalizadeh, Marilena E. Dasenaki, Evridiki Panagopoulou, Spyros Drivelos, Michał Halagarda, Constantınos A. Georgiou, Charalampos Proestos, Nikolaos S. Thomaidis
Software Mentions: 3
Published: about 3 years ago

10.3389/fpls.2019.01078

Salinity in Autumn-Winter Season and Fruit Quality of Tomato Landraces
Cited by: 24
Author(s): Tommaso Michele Moles, Rita de Brito Francisco, Lorenzo Mariotti, Antonio Pompeiano, Antonio Lupini, Luca Incrocci, Giulia Carmassi, Andrea Scartazza, Laura Pistelli, Lorenzo Guglielminetti, Alberto Pardossi, Francesco Sunseri, Stefan Hörtensteiner, Diana Santelia
Software Mentions: 3
Published: over 4 years ago

10.15252/embj.2018100847

Strong anion exchange‐mediated phosphoproteomics reveals extensive human non‐canonical phosphorylation
Cited by: 115
Author(s): Gemma Hardman, Simon Perkins, Philip Brownridge, Christopher J. Clarke, Dominic P. Byrne, Amy E. Campbell, Anton Kalyuzhnyy, Ashleigh C Myall, Patrick A. Eyers, Andrew R. Jones
Software Mentions: 3
Published: over 4 years ago

10.1186/1471-2180-11-126

Protein expression dynamics during Escherichia Coli glucose-lactose diauxie
Cited by: 19
Author(s): Ekaterina Mostovenko, André M. Deelder, Magnus Palmblad
Software Mentions: 3
Published: over 13 years ago

10.1007/s00401-016-1658-6

Paradoxical antidepressant effects of alcohol are related to acid sphingomyelinase and its control of sphingolipid homeostasis
Cited by: 64
Author(s): Christian P. Müller, L. S. Kalinichenko, Jens Tiesel, Matthias Witt, Thomas Stöckl, Eva Sprenger, Jens Fuchser, Janine Beckmann, Marc Praetner, Sabine Huber, Davide Amato, Christiane Mühle, Christian Büttner, Arif B. Ekici, Irena Smaga, Lucyna Pomierny-Chamioło, Bartosz Pomierny, Małgorzata Filip, Volker Eulenburg, Erich Gulbins, Anbarasu Lourdusamy, Martin Reichel, Johannes Kornhuber
Software Mentions: 3
Published: over 7 years ago

10.1155/2013/414631

Estimation of Ion Competition via Correlated Responsivity Offset in Linear Ion Trap Mass Spectrometry Analysis: Theory and Practical Use in the Analysis of Cyanobacterial Hepatotoxin Microcystin-LR in Extracts of Food Additives
Cited by: 1
Author(s): Jan Urban, Pavel Hrouzek, Dalibor Štys, Harald Martens
Software Mentions: 2
Published: over 11 years ago

10.1128/mBio.00210-19

Bacterial Swarming Reduces Proteus mirabilis and Vibrio parahaemolyticus Cell Stiffness and Increases β-Lactam Susceptibility
Cited by: 13
Author(s): George K. Auer, Piercen M. Oliver, Manohary Rajendram, Ti-Yu Lin, Qing Yao, Grant J. Jensen, Douglas B. Weibel
Software Mentions: 2
Published: over 4 years ago

10.3390/ijms17091386

Antiviral Activity of a Novel Compound CW-33 against Japanese Encephalitis Virus through Inhibiting Intracellular Calcium Overload
Cited by: 14
Author(s): Su-Hua Huang, Jin‐Cherng Lien, Chao‐Jung Chen, Yu-Ching Liu, Ching-Ying Wang, Chia-Fong Ping, Yu‐Fong Lin, An‐Cheng Huang, Cheng‐Wen Lin
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-021-82084-9

Early life dietary intervention in dairy calves results in a long-term reduction in methane emissions
Cited by: 24
Author(s): S. J. Meale, Milka Popova, Cristina Saro, Cécile Martin, Aurélien Bernard, Marie Lagrée, D. R. Yáñez-Ruíz, Hamid Boudra, S. Duval, Diego P. Morgavi
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-019-38492-z

Animal species identification in parchments by light
Cited by: 8
Author(s): Ángel Martín Fernández Alvarez, Julie Bouhy, Marc Dieu, Cathérine Charles, Olivier Deparis
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-92553-w

Activation and detoxification of cassava cyanogenic glucosides by the whitefly Bemisia tabaci
Cited by: 14
Author(s): Michael L. A. E. Easson, Osnat Malka, Christian Paetz, Anna Hojná, Michael Reichelt, Beate Stein, Sharon van Brunschot, Ester Feldmesser, Lahcen I. Campbell, John Colvin, Stephan Winter, Shai Morin, Jonathan Gershenzon, Daniel Giddings Vassão
Software Mentions: 2
Published: almost 3 years ago

10.3390/ijms17091565

Plant-to-Plant Variability in Root Metabolite Profiles of 19 Arabidopsis thaliana Accessions Is Substance-Class-Dependent
Cited by: 17
Author(s): Susann Mönchgesang, Nadine Strehmel, Diana Trutschel, Lore Westphal, Steffen Neumann, Dierk Scheel
Software Mentions: 2
Published: over 7 years ago

10.1038/srep24363

DNA hypomethylation upregulates expression of the MGAT3 gene in HepG2 cells and leads to changes in N-glycosylation of secreted glycoproteins
Cited by: 24
Author(s): Marija Klasić, Jasminka Krištić, Petra Korać, Tomislav Horvat, Dora Markulin, Aleksandar Vojta, Karli R. Reiding, Manfred Wuhrer, Gordan Lauc, Vlatka Zoldoš
Software Mentions: 2
Published: about 8 years ago

10.1038/srep22637

Age-associated metabolic dysregulation in bone marrow-derived macrophages stimulated with lipopolysaccharide
Cited by: 28
Author(s): Fan Fei, Keith M. Lee, Brian E. McCarry, Dawn M. E. Bowdish
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-017-02708-x

Endometriosis foci differentiation by rapid lipid profiling using tissue spray ionization and high resolution mass spectrometry
Cited by: 24
Author(s): Vitaliy Chagovets, Wenwen Wang, Alexey Kononikhin, Natalia Starodubtseva, Anna V. Borisova, Dinara Salimova, Igor Popov, А. В. Козаченко, Konstantin Chingin, Huanwen Chen, Vladimir Frankevich, L.V. Adamyan, Г. Т. Сухих
Software Mentions: 2
Published: almost 7 years ago

10.1186/1477-5956-8-56

Proteome changes in platelets activated by arachidonic acid, collagen, and thrombin
Cited by: 45
Author(s): Pavel Májek, Zuzana Reicheltová, Jana Štikarová, Jiřı́ Suttnar, Alžběta Sobotková, Jan E. Dyr
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.ppat.1002637

Structural Basis of Cytotoxicity Mediated by the Type III Secretion Toxin ExoU from Pseudomonas aeruginosa
Cited by: 66
Author(s): Claire Gendrin, Carlos Contreras‐Martel, Stéphanie Bouillot, Sylvie Elsen, David Lemaire, Dimitrios A. Skoufias, Philippe Huber, Ina Attrée, Andréa Dessen
Software Mentions: 2
Published: about 12 years ago

10.1007/s11306-013-0544-7

Metabolomics identifies a biological response to chronic low-dose natural uranium contamination in urine samples
Cited by: 27
Author(s): Stéphane Grison, Gaëlle Favé, Matthieu Maillot, Line Manens, Olivia Delissen, E. Blanchardon, Nathalie Banzet, Catherine Defoort, Raoul Bott, Isabelle Dublineau, Jocelyne Aigueperse, P. Gourmelon, Jean-Charles Martin, Maâmar Souidi
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.ppat.1003275

Monomeric Nucleoprotein of Influenza A Virus
Cited by: 87
Author(s): Sylvie Chenavas, Leandro F. Estrozi, Anny Slama‐Schwok, Bernard Delmas, Carmelo Di Primo, Florence Baudin, Xinping Li, Thibaut Crépin, Rob W.H. Ruigrok
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.ppat.1009232

Site-specific analysis of N-glycans from different sheep prion strains
Cited by: 9
Author(s): Natali Nakić, Thanh Hoa Tran, Mislav Novokmet, Olivier Andréoletti, Gordan Lauc, Giuseppe Legname
Software Mentions: 2
Published: over 3 years ago

10.1093/protein/gzx044

Novel CH1:CL interfaces that enhance correct light chain pairing in heterodimeric bispecific antibodies
Cited by: 26
Author(s): Maximilian Bönisch, Carolin Sellmann, Daniel Maresch, Claudia Halbig, Stefan Becker, Lars Toleikis, Björn Hock, Florian Rüker
Software Mentions: 2
Published: over 6 years ago

10.1038/srep11298

In situ characterizing membrane lipid phenotype of breast cancer cells using mass spectrometry profiling
Cited by: 52
Author(s): Manwen He, Shuai Guo, Zhili Li
Software Mentions: 2
Published: almost 9 years ago

10.1038/srep11894

Protein alterations in women with chronic widespread pain – An explorative proteomic study of the trapezius muscle
Cited by: 47
Author(s): Patrik Olausson, Björn Gerdle, Nazdar Ghafouri, Dick J Sjöström, Emelie Blixt, Bijar Ghafouri
Software Mentions: 2
Published: almost 9 years ago

10.1002/rcm.9035

SpheriCal^®‐ESI: A dendrimer‐based nine‐point calibration solution ranging from <i>m</i>/<i>z</i> 273 to 1716 for electrospray ionization mass spectrometry peptide analysis
Cited by: 1
Author(s): Joakim Romson, Oliver Freiholtz, Anher Saeed, Adrián Soto Kronberg, A. F. Thomas, Jamie Godfrey, Michael Malkoch, Scott M. Grayson, Åsa Emmer
Software Mentions: 2
Published: over 3 years ago

10.3390/ijms21020466

Identification of 56 Proteins Involved in Embryo–Maternal Interactions in the Bovine Oviduct
Cited by: 13
Author(s): Charles Banliat, Guillaume Tsikis, Valérie Labas, Ana-Paula Teixeira-Gomes, Emmanuelle Com, Régis Lavigne, Charles Pineau, Benoît Guyonnet, Pascal Mermillod, Marie Saint‐Dizier
Software Mentions: 2
Published: over 4 years ago

10.3390/metabo11090577

Reproducible Lipid Alterations in Patient-Derived Breast Cancer Xenograft FFPE Tissue Identified with MALDI MSI for Pre-Clinical and Clinical Application
Cited by: 9
Author(s): Vanna Denti, Maria Andersen, Andrew Smith, Anna M. Bofin, Anna Nordborg, Fulvio Magni, Siver Andreas Moestue, Marco Giampà
Software Mentions: 2
Published: over 2 years ago

10.3390/metabo11080484

The Metabolic Signature of In Vitro Produced Bovine Embryos Helps Predict Pregnancy and Birth after Embryo Transfer
Cited by: 4
Author(s): Isabel Gimeno, Pablo García‐Manrique, S. Carrocera, Cristina López-Hidalgo, Luís Valledor, David Martín-González, E. Gómez
Software Mentions: 2
Published: almost 3 years ago

10.3389/fmicb.2016.00050

Physiological Properties and Genome Structure of the Hyperthermophilic Filamentous Phage φOH3 Which Infects Thermus thermophilus HB8
Cited by: 22
Author(s): Yuko Nagayoshi, Kenta Kumagae, Kazuki Mori, Kosuke Tashiro, Ayano Nakamura, Yasuhiro Fujino, Yasuaki Hiromasa, Takeo Iwamoto, Satoru Kuhara, Toshihisa Ohshima, Kunio Doi
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-020-80003-y

The antimicrobial capacity of Cistus salviifolius and Punica granatum plant extracts against clinical pathogens is related to their polyphenolic composition
Cited by: 21
Author(s): Francisco Javier Álvarez‐Martínez, Juan Carlos Rodrı́guez, Fernando Borrás, Enrique Barrajón‐Catalán, Vicente Micol
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-97835-x

Metabolic effect of drought stress on the leaves of young oil palm (Elaeis guineensis) plants using UHPLC–MS and multivariate analysis
Cited by: 8
Author(s): Jorge Cândido Rodrigues Neto, Letícia Rios Vieira, José Antônio de Aquino Ribeiro, Carlos Antônio Ferreira de Sousa, Manoel Teixeira Souza Júnior, Patrícia Verardi Abdelnur
Software Mentions: 2
Published: over 2 years ago

10.3389/fgene.2019.00348

Genetic Regulation of Liver Metabolites and Transcripts Linking to Biochemical-Clinical Parameters
Cited by: 7
Author(s): Siriluck Ponsuksili, Nares Trakooljul, Frieder Hadlich, Karen Methling, Michael Lalk, Eduard Muráni, Klaus Wimmers
Software Mentions: 2
Published: about 5 years ago

10.3390/antiox8010010

Structural and Biochemical Insights into the Reactivity of Thioredoxin h1 from Chlamydomonas reinhardtii
Cited by: 14
Author(s): Christophe Marchand, Simona Fermani, Jacopo Rossi, Libero Gurrieri, Daniele Tedesco, Julien Henri, Francesca Sparla, Paolo Bernardo Trost, Stéphane D. Lemaire, Mirko Zaffagnini
Software Mentions: 2
Published: over 5 years ago

10.3389/fcell.2021.720570

Ion Mobility Coupled to a Time-of-Flight Mass Analyzer Combined With Fragment Intensity Predictions Improves Identification of Classical Bioactive Peptides and Small Open Reading Frame-Encoded Peptides
Cited by: 7
Author(s): Marlies K. R. Peeters, Geert Baggerman, Ralf Gabriels, Elise Pepermans, Gerben Menschaert, Kurt Boonen
Software Mentions: 2
Published: over 2 years ago

10.3390/insects10020042

Proteomic Analysis of the Venom from the Ruby Ant Myrmica rubra and the Isolation of a Novel Insecticidal Decapeptide
Cited by: 14
Author(s): J. Heep, Alica Klaus, Tobias Kessel, Maximilian Seip, Andreas Vilcinskas, Marisa Škaljac
Software Mentions: 2
Published: over 5 years ago

10.1186/2001-1326-1-11

Peptidomic profiles of post myocardial infarction rats affinity depleted plasma using matrix‐assisted laser desorption/ionization time of flight (MALDI‐ToF) mass spectrometry
Cited by: 2
Author(s): Bing Hui Wang, Simone Reisman, Mark Bailey, A. Kompa, Mustafa Ayhan, Henry Krum, Gregory E. Rice
Software Mentions: 2
Published: almost 12 years ago

10.1038/s42003-020-0817-4

pH-responsive high stability polymeric nanoparticles for targeted delivery of anticancer therapeutics
Cited by: 137
Author(s): L. Palanikumar, Sumaya Al-Hosani, Mona Kalmouni, Vanessa P. Nguyen, Liaqat Ali, Renu Pasricha, Francisco N. Barrera, Mazin Magzoub
Software Mentions: 2
Published: about 4 years ago

10.1007/s00018-020-03504-z

Colorectal cancer cell lines show striking diversity of their O-glycome reflecting the cellular differentiation phenotype
Cited by: 33
Author(s): Katarina Madunić, Tao Zhang, Oleg A. Mayboroda, Stephanie Holst, Kathrin Stavenhagen, Chunsheng Jin, Niclas G. Karlsson, Guinevere S. M. Lageveen-Kammeijer, Manfred Wuhrer
Software Mentions: 2
Published: about 4 years ago

10.1186/s13020-016-0104-y

Assessing the quality of Smilacis Glabrae Rhizoma (Tufuling) by colormetrics and UPLC-Q-TOF-MS
Cited by: 11
Author(s): Xi-Cheng He, Tao Yi, Yiqun Tang, Jun Xu, Jianye Zhang, Yazhou Zhang, Lixin Dong, Hubiao Chen
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41419-018-0423-2

A multi-omic analysis reveals the role of fumarate in regulating the virulence of enterohemorrhagic Escherichia coli
Cited by: 20
Author(s): Chengi Kuo, Sin Tian Wang, Chia Mei Lin, Hao-Chieh Chiu, Cheng Huang, Der Yen Lee, Geen Dong Chang, Tse‐Chuan Chou, Jenn Wei Chen, Chang Shi Chen
Software Mentions: 2
Published: about 6 years ago

10.1186/s13569-019-0119-0

Radiotherapy resistance in chondrosarcoma cells; a possible correlation with alterations in cell cycle related genes
Cited by: 30
Author(s): Yvonne de Jong, Martha Ingola, Inge H. Briaire-de Bruijn, Alwine B. Kruisselbrink, Sanne Venneker, Ieva Palubeckaitė, Bram Heijs, Anne‐Marie Cleton‐Jansen, Rick L. M. Haas, Judith V.M.G. Bovée
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0074584

Doping Control Using High and Ultra-High Resolution Mass Spectrometry Based Non-Targeted Metabolomics-A Case Study of Salbutamol and Budesonide Abuse
Cited by: 30
Author(s): Agnèta Kiss, Marianna Lucio, Aurélie Fildier, Corinne Buisson, Philippe Schmitt‐Kopplin, Cécile Cren-Olivé
Software Mentions: 2
Published: over 10 years ago

10.1186/1471-2407-9-104

Prediction of breast cancer by profiling of urinary RNA metabolites using Support Vector Machine-based feature selection
Cited by: 65
Author(s): Carsten Henneges, Dino Bullinger, Richard Fux, Natascha Friese, Harald Seeger, Hans Neubauer, Stefan Laufer, Christoph H. Gleiter, Matthias Schwab, Andreas Zell, Bernd Kammerer
Software Mentions: 2
Published: about 15 years ago

10.1371/journal.pone.0004501

Two Chromogranin A-Derived Peptides Induce Calcium Entry in Human Neutrophils by Calmodulin-Regulated Calcium Independent Phospholipase A2
Cited by: 87
Author(s): Dandan Zhang, Peiman Shooshtarizadeh, Benoît‐Joseph Laventie, Didier Colin, Jean-François Chich, Jasmina Vidić, Jean de Barry, Sylvette Chasserot‐Golaz, François Delalande, Alain Van Dorsselaer, Francis Schneider, Karen B. Helle, Dominique Aunis, Gilles Prévost, Marie‐Hélène Metz‐Boutigue
Software Mentions: 2
Published: about 15 years ago

10.1371/journal.pone.0028532

Conserved BK Channel-Protein Interactions Reveal Signals Relevant to Cell Death and Survival
Cited by: 38
Author(s): Bernd Sokolowski, Sandra Orchard, Margaret Harvey, Settu Sridhar, Yoshihisa Sakai
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0211237

Discovery of potential ovicidal natural products using metabolomics
Cited by: 18
Author(s): Dyego Gonçalves Lino Borges, Jéssica Teles Echeverria, Tamires Lima de Oliveira, Rafael Pereira Heckler, Mariana Green de Freitas, Geraldo Alves Damasceno-Júnior, Carlos Alexandre Carollo, Fernando de Almeida Borges
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0195442

An antibody with Fab-constant domains exchanged for a pair of CH3 domains
Cited by: 9
Author(s): Gordana Wozniak‐Knopp, Gerhard Stadlmayr, Jan Walther Perthold, Katharina Stadlbauer, Mathias Gotsmy, Stefan Becker, Florian Rüker
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0006085

The Complete Genome of Teredinibacter turnerae T7901: An Intracellular Endosymbiont of Marine Wood-Boring Bivalves (Shipworms)
Cited by: 93
Author(s): Joyce C. Yang, Ramana Madupu, A. Scott Durkin, Nathan A. Ekborg, Chandra Sekhar Pedamallu, Jessica B. Hostetler, Diana Radune, Bradley Toms, Bernard Henrissat, Pedro M. Coutinho, Sandra Schwarz, Lauren Field, Amaro E. Trindade-Silva, Carlos A. G. Soares, Sherif I. Elshahawi, Amro Hanora, Eric W. Schmidt, Margo G. Haygood, János Pósfai, Jack S. Benner, Catherine L. Madinger, John Nove, Brian P. Anton, Kshitiz Chaudhary, Jeremy M. Foster, Alex Holman, Sanjay Kumar, Philip A. Lessard, Yvette A. Luyten, Barton E. Slatko, Nicole Wood, Bo Wu, Max Teplitski, Joseph D. Mougous, Naomi Ward, Jonathan A. Eisen, Jonathan H. Badger, Daniel L. Distel
Software Mentions: 2
Published: almost 15 years ago

10.1007/s00216-019-01885-0

Supporting non-target identification by adding hydrogen deuterium exchange MS/MS capabilities to MetFrag
Cited by: 14
Author(s): Christoph Ruttkies, Emma L. Schymanski, Nadine Strehmel, Juliane Hollender, Steffen Neumann, Antony J. Williams, Martin Krauß
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0063724

Serum Peptidome Variations in a Healthy Population: Reference to Identify Cancer-Specific Peptides
Cited by: 11
Author(s): Kun He, Xinyu Wen, Ailing Li, Tao Li, Jie Wang, Hongxia Wang, Na Wang
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0254834

A phenolic-rich extract from Ugni molinae berries reduces abnormal protein aggregation in a cellular model of Huntington’s disease
Cited by: 7
Author(s): Rodrigo Pérez-Arancibia, José Luis Ordóñez, Alexis Rivas, Philippe Pihán, Alfredo I. Sagredo, Ulises Ahumada, Andrés Barriga, Ivette Seguel, César Cárdenas, René L. Vidal, Claudio Hetz, Carla Delporte
Software Mentions: 2
Published: almost 3 years ago

10.1371/journal.pone.0032606

Metabolic and Proteomic Profiling of Diapause in the Aphid Parasitoid Praon volucre
Cited by: 74
Author(s): Hervé Colinet, David Renault, Blandine Guével, Emmanuelle Com
Software Mentions: 2
Published: about 12 years ago

10.3390/biom9100535

MS-Based Approaches Enable the Structural Characterization of Transcription Factor/DNA Response Element Complex
Cited by: 9
Author(s): Lukáš Slavata, Josef Chmelı́k, Daniel Kavan, Růžena Filandrová, Jan Fiala, Michal Rosůlek, Hynek Mrázek, Zdeněk Kukačka, Karel Vališ, Petr Man, Michael Miller, William D. McIntyre, Daniele Fabris, Petr Novák
Software Mentions: 2
Published: over 4 years ago

10.1186/1752-153X-7-36

Exploring potential chemical markers by metabolomics method for studying the processing mechanism of traditional Chinese medicine using RPLC-Q-TOF/MS: a case study of Radix Aconiti
Cited by: 21
Author(s): Yubo Li, Yuming Wang, Li-Na Su, Lixin Li, Yanjun Zhang
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pgen.1007514

Regulation of the opposing (p)ppGpp synthetase and hydrolase activities in a bifunctional RelA/SpoT homologue from Staphylococcus aureus
Cited by: 58
Author(s): Fabio Lino Gratani, Petra Horvatek, Tobias Geiger, Marina Borisova, Christoph Mayer, Iwan Grin, Samuel Wagner, Wieland Steinchen, Gert Bange, Ana Velić, Boris Maček, Christiane Wolz
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12915-015-0186-5

Systems-level organization of yeast methylotrophic lifestyle
Cited by: 110
Author(s): Hannes Rußmayer, Markus Buchetics, Clemens Gruber, Minoska Valli, Karlheinz Grillitsch, Gerda Modarres, Raffaele Guerrasio, Kristaps Klavins, Stefan Neubauer, H. Drexler, Matthias G. Steiger, Christina Troyer, Ali Al Chalabi, Guido Krebiehl, Denise Sonntag, Günther Zellnig, Günther Daum, Alexandra B. Graf, Friedrich Altmann, Gunda Koellensperger, Stephan Hann, Michael Sauer, Diethard Mattanovich, Brigitte Gasser
Software Mentions: 2
Published: over 8 years ago

10.1002/pld3.38

Diurnal regulation of cyanogenic glucoside biosynthesis and endogenous turnover in cassava
Cited by: 25
Author(s): Frederik Bøgeskov Schmidt, Seok Keun Cho, Carl Erik Olsen, Seong Wook Yang, Birger Lindberg Møller, Kirsten Jørgensen
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0195639

Proteomic analysis of human epileptic neocortex predicts vascular and glial changes in epileptic regions
Cited by: 20
Author(s): Gal Keren-Aviram, Fabien Dachet, Shruti Bagla, Karina Balan, Jeffrey A. Loeb, Edward A. Dratz
Software Mentions: 2
Published: about 6 years ago

10.3390/molecules19055490

Evaluation of Antioxidant and Antimicrobial Activities and Phenolic Profile for Hyssopus officinalis, Ocimum basilicum and Teucrium chamaedrys
Cited by: 142
Author(s): Laurian Vlase, Daniela Benedec, Daniela Hanganu, Grigore Damian, Ioan Csillag, Bogdan Sevastre, Augustin C. Moţ, Radu Silaghi-Dumitrescu, Ioan Ţilea
Software Mentions: 2
Published: about 10 years ago

10.3389/fbioe.2020.00873

Comparative Characterization of Aspergillus Pectin Lyases by Discriminative Substrate Degradation Profiling
Cited by: 14
Author(s): Birgitte Zeuner, Thore Bach Thomsen, Mary A. Stringer, Kristian B. R. M. Krogh, Anne S. Meyer, Jesper Holck
Software Mentions: 2
Published: almost 4 years ago

10.1186/1471-2105-15-S11-S12

Haystack, a web-based tool for metabolomics research
Cited by: 10
Author(s): Stephen C. Grace, Stephen Embry, Heng Luo
Software Mentions: 2
Published: over 9 years ago

10.3389/fimmu.2018.02436

Comparative Glycomics of Immunoglobulin A and G From Saliva and Plasma Reveals Biomarker Potential
Cited by: 54
Author(s): Rosina Plomp, Noortje de Haan, Albert Bondt, Jayshri Murli, Viktoria Dotz, Manfred Wuhrer
Software Mentions: 2
Published: over 5 years ago

10.3390/molecules23102521

Isolation and Identification of the Five Novel Flavonoids from Genipa americana Leaves
Cited by: 9
Author(s): Larissa Marina Pereira Silva, Jovelina Samara Ferreira Alves, Emerson Michell da Silva Siqueira, Manoel André de Souza Neto, Lucas Silva Abreu, Josean Fechine Tavares, Dayanne Lopes Porto, Leandro de Santis Ferreira, Daniel P. Demarque, Norberto Peporine Lopes, Cícero Flávio Soares Aragão, Silvana Maria Zucolotto
Software Mentions: 2
Published: over 5 years ago

10.3390/antiox10020152

Function and Regulation of Chloroplast Peroxiredoxin IIE
Cited by: 10
Author(s): Anna Dreyer, Patrick Treffon, Daniel Basiry, Anna Maria Józefowicz, Andrea Matros, Hans‐Peter Mock, Karl‐Josef Dietz
Software Mentions: 2
Published: over 3 years ago

10.1080/13880209.2020.1795208

Biological activities of leaf extracts from selected <i>Kalanchoe</i> species and their relationship with bufadienolides content
Cited by: 16
Author(s): Justyna Stefanowicz–Hajduk, Anna Hering, Magdalena Gucwa, Rafał Hałasa, Agata Soluch, Mariusz Kowalczyk, Anna Stochmal, Renata Ochocka
Software Mentions: 2
Published: over 4 years ago

10.3389/fpls.2018.01754

One Pathway Is Not Enough: The Cabbage Stem Flea Beetle Psylliodes chrysocephala Uses Multiple Strategies to Overcome the Glucosinolate-Myrosinase Defense in Its Host Plants
Cited by: 30
Author(s): Franziska Beran, Theresa Sporer, Christian Paetz, Seung-Joon Ahn, Franziska Betzin, Grit Kunert, Anton Shekhov, Daniel Giddings Vassão, Stefan Bartram, Sybille Lorenz, Michael Reichelt
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0201424

An interdisciplinary study around the reliquary of the late cardinal Jacques de Vitry
Cited by: 1
Author(s): Ronny Decorte, Caroline Polet, Mathieu Boudin, Françoise Tilquin, Jean-Yves Matroule, Marc Dieu, Cathérine Charles, Aurore Carlier, Fiona Lebecque, Olivier Deparis
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0096809

Calponin-Like Chd64 Is Partly Disordered
Cited by: 10
Author(s): Małgorzata Kozłowska, Aneta Tarczewska, Michał Jakób, Kamil Szpotkowski, Magdalena Wojtas, Grzegorz Rymarczyk, Andrzej Ożyhar
Software Mentions: 2
Published: about 10 years ago

10.1007/s11306-017-1202-2

Untargeted metabolomics reveals a mild impact of remote ischemic conditioning on the plasma metabolome and α-hydroxybutyrate as a possible cardioprotective factor and biomarker of tissue ischemia
Cited by: 11
Author(s): Mia Roest Laursen, Jakob Hansen, Casper Carlsen Elkjær, Ninna Stavnager, Camilla Bak Nielsen, Kasper Pryds, Jacob Johnsen, Jesper Nielsen, Hans Erik Bøtker, Mogens Johannsen
Software Mentions: 2
Published: about 7 years ago

10.1007/s11306-016-1092-8

Metabolomics reveals dose effects of low-dose chronic exposure to uranium in rats: identification of candidate biomarkers in urine samples
Cited by: 20
Author(s): Stéphane Grison, Gaëlle Favé, Matthieu Maillot, Line Manens, Olivia Delissen, E. Blanchardon, Isabelle Dublineau, Jocelyne Aigueperse, Sandra Bohand, Jean‐Charles Martin, Maâmar Souidi
Software Mentions: 2
Published: over 7 years ago

10.1128/AEM.00390-19

Versatile Oxidase and Dehydrogenase Activities of Bacterial Pyranose 2-Oxidase Facilitate Redox Cycling with Manganese Peroxidase <i>In Vitro</i>
Cited by: 18
Author(s): Peter L. Herzog, Leander Sützl, Beate Eisenhut, Daniel Maresch, Dietmar Haltrich, Christian Obinger, Clemens K. Peterbauer
Software Mentions: 2
Published: almost 5 years ago

10.3390/ijms22042040

Accumulation of the Auxin Precursor Indole-3-Acetamide Curtails Growth through the Repression of Ribosome-Biogenesis and Development-Related Transcriptional Networks
Cited by: 6
Author(s): Beatriz Sánchez-Parra, Marta‐Marina Pérez‐Alonso, Paloma Ortiz‐García, José Moya-Cuevas, Mathias Hentrich, Stephan Pollmann
Software Mentions: 2
Published: over 3 years ago