Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: roxygen2
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/roxygen2
In-Line Documentation for R
28 versions
Latest release: almost 2 years ago
472 dependent packages
180,150 downloads last month
Papers Mentioning roxygen2 14
10.1186/s13321-020-00477-w
patRoon: open source software platform for environmental mass spectrometry based non-target screeningCited by: 76
Author(s): Rick Helmus, Thomas L. ter Laak, Annemarie P. van Wezel, P. de Voogt, Emma L. Schymanski
Software Mentions: 20
Published: almost 4 years ago
10.1371/journal.pone.0061217
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census DataCited by: 11,386
Author(s): Paul J. McMurdie, Susan Holmes
Software Mentions: 19
Published: over 11 years ago
10.12688/gatesopenres.12832.2
DataPackageR: Reproducible data preprocessing, standardization and sharing using R/Bioconductor for collaborative data analysisCited by: 7
Author(s): Greg Finak, Bryan T. Mayer, William J. Fulp, Paul Obrecht, Alicia Sato, Eva Yin-han Chung, Drienna Holman, Raphaël Gottardo
Software Mentions: 19
Published: over 6 years ago
10.12688/f1000research.22139.2
scRepertoire: An R-based toolkit for single-cell immune receptor analysisCited by: 121
Author(s): Nicholas Borcherding, Nicholas L. Bormann, Gloria Kraus
Software Mentions: 16
Published: over 4 years ago
10.1128/MRA.00129-19
omu, a Metabolomics Count Data Analysis Tool for Intuitive Figures and Convenient Metadata CollectionCited by: 12
Author(s): Connor R. Tiffany, Andreas J. Bäumler
Software Mentions: 16
Published: over 5 years ago
10.1371/journal.pone.0223542
Joint emulation of Earth System Model temperature-precipitation realizations with internal variability and space-time and cross-variable correlation: fldgen v2.0 software descriptionCited by: 3
Author(s): Abigail Snyder, Robert Link, Kalyn Dorheim, Ben Kravitz, Ben Bond‐Lamberty, Corinne Hartin
Software Mentions: 14
Published: about 5 years ago
10.1186/s40168-020-0793-4
Separating the signal from the noise in metagenomic cell-free DNA sequencingCited by: 26
Author(s): Philip Burnham, Nardhy Gómez-López, Michael Heyang, Alexandre Pellan Cheng, Joan Sesing Lenz, Darshana Dadhania, John Richard Lee, Manikkam Suthanthiran, Roberto Romero, Iwijn De Vlaminck
Software Mentions: 12
Published: almost 5 years ago
10.3897/BDJ.9.e71378
Molecular Acquisition, Cleaning and Evaluation in R (MACER) - A tool to assemble molecular marker datasets from BOLD and GenBankCited by: 2
Author(s): Reginald H.F. Young, Rekkab Gill, Daniel Gillis, Robert Hanner
Software Mentions: 11
Published: about 3 years ago
10.1186/s12859-015-0613-1
tcR: an R package for T cell receptor repertoire advanced data analysisCited by: 199
Author(s): Vadim Nazarov, Mikhail V. Pogorelyy, Ekaterina A. Komech, Ivan V. Zvyagin, Dmitriy A. Bolotin, Mikhail Shugay, Dmitriy M. Chudakov, Yuri B. Lebedev, Ilgar Z. Mamedov
Software Mentions: 10
Published: over 9 years ago
10.1093/jamiaopen/ooy059
ROMOP: a light-weight R package for interfacing with OMOP-formatted electronic health record dataCited by: 12
Author(s): Benjamin S. Glicksberg, Boris Oskotsky, Nicholas Giangreco, Phyllis Thangaraj, Vivek Rudrapatna, Debajyoti Datta, Remi Frazier, Nelson Lee, Rick Larsen, Nicholas P. Tatonetti, Atul J. Butte
Software Mentions: 9
Published: almost 6 years ago
10.1186/s12885-019-6235-7
lionessR: single sample network inference in RCited by: 22
Author(s): Marieke L. Kuijjer, Ping-Han Hsieh, John Quackenbush, Kimberly Glass
Software Mentions: 9
Published: about 5 years ago
10.1155/2016/9185496
Lncident: A Tool for Rapid Identification of Long Noncoding RNAs Utilizing Sequence Intrinsic Composition and Open Reading Frame InformationCited by: 12
Author(s): Siyu Han, Yanchun Liang, Ying Liu, Wei Du
Software Mentions: 6
Published: almost 9 years ago
10.3389/fmicb.2018.00785
SplinectomeR Enables Group Comparisons in Longitudinal Microbiome StudiesCited by: 44
Author(s): Robin R. Shields-Cutler, Gabe A. Al-Ghalith, Moran Yassour, Dan Knights
Software Mentions: 5
Published: over 6 years ago
10.3390/ijms22084267
smartPARE: An R Package for Efficient Identification of True mRNA Cleavage SitesCited by: 4
Author(s): Kristian Persson Hodén, Xinyi Hu, Gabriel García Martínez, Christina Dixelius
Software Mentions: 4
Published: over 3 years ago