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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1371/journal.pone.0061217

https://doi.org/10.1371/journal.pone.0061217

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

Cited by: 11,386
Author(s): Paul J. McMurdie, Susan Holmes
Published: over 12 years ago

Software Mentions 19

bioconductor: multtest
Resampling-based multiple hypothesis testing
Papers that mentioned: 158
Very Likely Science (98)
bioconductor: OTUbase
Provides structure and functions for the analysis of OTU data
Papers that mentioned: 1
Very Likely Science (100)
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
Very Likely Science (75)
cran: distory
Distance Between Phylogenetic Histories
Papers that mentioned: 1
Very Likely Science (85)
cran: foreach
Provides Foreach Looping Construct
Papers that mentioned: 50
Very Likely Science (77)
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
Very Likely Science (100)
cran: knitr
A General-Purpose Package for Dynamic Report Generation in R
Papers that mentioned: 157
Very Likely Science (75)
cran: phangorn
Phylogenetic Reconstruction and Analysis
Papers that mentioned: 192
Very Likely Science (100)
cran: picante
Integrating Phylogenies and Ecology
Papers that mentioned: 414
Very Likely Science (85)
cran: plyr
Tools for Splitting, Applying and Combining Data
Papers that mentioned: 468
Very Likely Science (100)
cran: reshape
Flexibly Reshape Data
Papers that mentioned: 123
Very Likely Science (83)
cran: RJSONIO
Serialize R Objects to JSON, JavaScript Object Notation
Papers that mentioned: 10
Very Likely Science (75)
cran: roxygen2
In-Line Documentation for R
Papers that mentioned: 14
Very Likely Science (100)
cran: scales
Scale Functions for Visualization
Papers that mentioned: 104
Very Likely Science (100)
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
Very Likely Science (100)
pypi: ggplot
ggplot for python
Papers that mentioned: 796
Very Likely Science (100)
pypi: plyr
UNKNOWN
Papers that mentioned: 468
Very Likely Science (65)
pypi: reshape
The missing reshape for Python
Papers that mentioned: 123
Very Likely Science (65)
pypi: scales
Stats for Python processes
Papers that mentioned: 104
Very Likely Science (65)