cran: scales | Projects | Ecosyste.ms: Papers

10.1186/1471-2156-15-81

Copy number polymorphisms near SLC2A9 are associated with serum uric acid concentrations
Cited by: 16
Author(s): Robert B. Scharpf, Lynn Mireles, Qiong Yang, Anna Köttgen, Ingo Ruczinski, Katalin Suszták, Eitan Halper-Stromberg, Adrienne Tin, Stephen Cristiano, Aravinda Chakravarti, Eric Boerwinkle, Caroline S. Fox, Josef Coresh, W. H. Linda Kao
Software Mentions: 56
Published: almost 11 years ago

10.1038/s41598-020-76683-1

Revisiting potential associations between brain morphology, fear acquisition and extinction through new data and a literature review
Cited by: 7
Author(s): Mana R. Ehlers, Janne Nold, Manuel Kuhn, Maren Klingelhöfer-Jens, Tina B. Lonsdorf
Software Mentions: 44
Published: about 4 years ago

10.1186/s40462-020-00219-5

No room to roam: King Cobras reduce movement in agriculture
Cited by: 27
Author(s): Benjamin Michael Marshall, Matt Crane, Inês Silva, Colin Thomas Strine, Max Dolton Jones, Cameron Wesley Hodges, Pongthep Suwanwaree, Taksin Artchawakom, Surachit Waengsothorn, Matt Goode
Software Mentions: 31
Published: over 4 years ago

10.3389/fmicb.2018.01474

Distinct Oceanic Microbiomes From Viruses to Protists Located Near the Antarctic Circumpolar Current
Cited by: 24
Author(s): Flavia Flaviani, Declan C. Schroeder, Karen Lebret, Cecilia Balestreri, Andrea Highfield, Joanna L. Schroeder, Sally Thorpe, Karen Moore, Konrad Pasckiewicz, Maya C. Pfaff, Edward P. Rybicki
Software Mentions: 27
Published: over 6 years ago

10.3389/fvets.2020.547181

Impacts of Short-Term Antibiotic Withdrawal and Long-Term Judicious Antibiotic Use on Resistance Gene Abundance and Cecal Microbiota Composition on Commercial Broiler Chicken Farms in Québec
Cited by: 9
Author(s): Catherine Turcotte, Alexandre Thibodeau, Sylvain Quessy, Edward Topp, Guy Beauchamp, Philippe Fravalo, Marie Archambault, Marie-Lou Gaucher
Software Mentions: 23
Published: almost 4 years ago

10.1155/2021/8020879

Novel lncRNA Panel as for Prognosis in Esophageal Squamous Cell Carcinoma Based on ceRNA Network Mechanism
Cited by: 10
Author(s): Jin Zhang, Fei Xiao, Guangliang Qiang, Zhenrong Zhang, Qianli Ma, Hao Yang, H. Rosie Xing, Chaoyang Liang
Software Mentions: 22
Published: about 3 years ago

10.1038/s41598-019-55469-0

Minor compositional alterations in faecal microbiota after five weeks and five months storage at room temperature on filter papers
Cited by: 6
Author(s): Sebastian von Huth, Louise B. Thingholm, Corinna Bang, Malte Rühlemann, André Franke, Uffe Holmskov
Software Mentions: 20
Published: almost 5 years ago

10.7554/eLife.51254

Gene regulatory network reconstruction using single-cell RNA sequencing of barcoded genotypes in diverse environments
Cited by: 102
Author(s): Christopher Jackson, Dayanne M. Castro, Giuseppe-Antonio Saldi, Richard Bonneau, David Gresham
Software Mentions: 20
Published: almost 5 years ago

10.1371/journal.pntd.0005121

Seasonal and Spatial Environmental Influence on Opisthorchis viverrini Intermediate Hosts, Abundance, and Distribution: Insights on Transmission Dynamics and Sustainable Control
Cited by: 20
Author(s): Christina Sunyoung Kim, Pierre Echaubard, Apiporn Suwannatrai, Sasithorn Kaewkes, Bruce A. Wilcox, Banchob Sripa
Software Mentions: 19
Published: almost 8 years ago

10.1371/journal.pone.0061217

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
Cited by: 11,386
Author(s): Paul J. McMurdie, Susan Holmes
Software Mentions: 19
Published: over 11 years ago

10.1371/journal.pone.0238665

Generalized linear models provide a measure of virulence for specific mutations in SARS-CoV-2 strains
Cited by: 19
Author(s): Anastasis Oulas, Maria Zanti, Marios Tomazou, Margarita Zachariou, George Minadakis, Marilena M. Bourdakou, Margarita Zachariou, George M. Spyrou
Software Mentions: 18
Published: almost 4 years ago

10.1371/journal.pone.0194899

Investigation of the seasonal microbiome of Anopheles coluzzii mosquitoes in Mali
Cited by: 34
Author(s): Benjamin J Krajacich, Diana L. Huestis, Adama Dao, Alpha Seydou Yaro, Moussa Diallo, Asha Krishna, Jianchu Xu, Tovi Lehmann
Software Mentions: 18
Published: over 6 years ago

10.3390/genes12030413

Spt4 Promotes Pol I Processivity and Transcription Elongation
Cited by: 5
Author(s): Abigail K. Huffines, Yvonne J. K. Edwards, David A. Schneider
Software Mentions: 18
Published: over 3 years ago

10.1016/j.molcel.2021.05.023

Global analysis of protein-RNA interactions in SARS-CoV-2-infected cells reveals key regulators of infection
Cited by: 87
Author(s): Wael Kamel, Marko Noerenberg, Berati Cerikan, Honglin Chen, Aino I Järvelin, Mohamed Kammoun, Young Seok Lee, Shuai Ni, Manuel García-Moreno, Anna Andrejeva, Michael J. Deery, Natasha Johnson, Christopher J Neufeldt, Mirko Cortese, Michael Knight, Kathryn S. Lilley, Javier Martı̂nez, Ilan Davis, Ralf Bartenschlager, Shabaz Mohammed, Alfredo Castelló
Software Mentions: 18
Published: over 3 years ago

10.3390/brainsci11081017

Facial Signals and Social Actions in Multimodal Face-to-Face Interaction
Cited by: 14
Author(s): Naomi Nota, James P. Trujillo, Judith Holler
Software Mentions: 17
Published: over 3 years ago

10.1073/pnas.2006024117

Diel variability of methane emissions from lakes
Cited by: 46
Author(s): Anna Sieczko, Nguyen Thanh Duc, Jonathan Schenk, Gustav Pajala, David Rudberg, Henrique O. Sawakuchi, David Bastviken
Software Mentions: 17
Published: over 4 years ago

10.1016/j.cell.2015.01.006

Enhancer Evolution across 20 Mammalian Species
Cited by: 626
Author(s): Diego Villar, Camille Berthelot, Sarah Aldridge, Tim Rayner, Margus Lukk, Miguel Pignatelli, Thomas J. Park, Robert Deaville, Jonathan Thor Erichsen, Anna J. Jasinska, James M. A. Turner, Mads F. Bertelsen, Elizabeth P. Murchison, Paul Flicek, Duncan T. Odom
Software Mentions: 17
Published: almost 10 years ago

10.3389/fmicb.2019.00240

Changes in Trophic Groups of Protists With Conversion of Rainforest Into Rubber and Oil Palm Plantations
Cited by: 38
Author(s): Garvin Schulz, Dominik Schneider, Nicole Brinkmann, Nur Edy, Rolf Daniel, Andrea Polle, Stefan Scheu, Valentyna Krashevska
Software Mentions: 16
Published: almost 6 years ago

10.12688/f1000research.16198.2

scClustViz – Single-cell RNAseq cluster assessment and visualization
Cited by: 25
Author(s): Brendan T. Innes, Gary D. Bader
Software Mentions: 16
Published: over 5 years ago

10.3390/biom10081095

Glutenin and Gliadin, a Piece in the Puzzle of their Structural Properties in the Cell Described through Monte Carlo Simulations
Cited by: 26
Author(s): Joel Markgren, Mikael S. Hedenqvist, Faiza Rasheed, Marie Skepö, Eva Johansson
Software Mentions: 15
Published: over 4 years ago

10.1186/s40168-020-00961-3

Whole microbial community viability is not quantitatively reflected by propidium monoazide sequencing approach
Cited by: 30
Author(s): Wang Ya, Yan Yan, Kelsey N. Thompson, Sena Bae, Emma K. Accorsi, Yancong Zhang, Jiaxian Shen, Hera Vlamakis, Erica M. Hartmann, Curtis Huttenhower
Software Mentions: 15
Published: almost 4 years ago

10.1128/mBio.02120-17

Fecal Microbiota Signatures Are Associated with Response to Ustekinumab Therapy among Crohn’s Disease Patients
Cited by: 95
Author(s): Matthew K. Doherty, Tao Ding, Charlie C. Koumpouras, Shannon Telesco, Calixte S. Monast, Anuk Das, Carrie Brodmerkel, Patrick D. Schloss
Software Mentions: 15
Published: over 6 years ago

10.3390/microorganisms9061167

Diversity and Oil Degradation Potential of Culturable Microbes Isolated from Chronically Contaminated Soils in Trinidad
Cited by: 10
Author(s): Amanda C. Ramdass, Sephra N. Rampersad
Software Mentions: 14
Published: over 3 years ago

10.1371/journal.pone.0223542

Joint emulation of Earth System Model temperature-precipitation realizations with internal variability and space-time and cross-variable correlation: fldgen v2.0 software description
Cited by: 3
Author(s): Abigail Snyder, Robert Link, Kalyn Dorheim, Ben Kravitz, Ben Bond‐Lamberty, Corinne Hartin
Software Mentions: 14
Published: about 5 years ago

10.1038/s41598-021-97071-3

Characterizing rhizosphere microbiota of peanut (Arachis hypogaea L.) from pre-sowing to post-harvest of crop under field conditions
Cited by: 10
Author(s): Ankit T. Hinsu, Ketankumar Panchal, Ramesh Pandit, Prakash G. Koringa, Ramesh Kothari
Software Mentions: 14
Published: about 3 years ago

10.1186/s13073-021-00907-w

Impact of rare and common genetic variation in the interleukin-1 pathway on human cytokine responses
Cited by: 5
Author(s): Rosanne C. van Deuren, Peer Arts, Giulio Cavalli, Martin Jaeger, Marloes Steehouwer, Maartje van de Vorst, Christian Gilissen, Leo A. B. Joosten, Charles A. Dinarello, Musa M. Mhlanga, Vinod Kumar, Mihai G. Netea, Frank L. van de Veerdonk, Alexander Hoischen
Software Mentions: 14
Published: over 3 years ago

10.1002/bjs5.50138

Global variation in anastomosis and end colostomy formation following left‐sided colorectal resection
Cited by: 16
Author(s): GlobalSurg Collaborative
Software Mentions: 13
Published: over 5 years ago

10.2196/mental.9946

Predicting Caller Type From a Mental Health and Well-Being Helpline: Analysis of Call Log Data
Cited by: 9
Author(s): Alexander Grigorash, Siobhan O’Neill, Raymond Bond, Colette Ramsey, Chérie Armour, Maurice Mulvenna
Software Mentions: 13
Published: over 6 years ago

10.3389/fonc.2021.583547

Alternative Splicing Events in Tumor Immune Infiltration in Colorectal Cancer
Cited by: 5
Author(s): Shi Jian-yu, Yan-yan Bi, Bo Yu, Qingfeng Wang, Teng Dan, WU Dong-ning
Software Mentions: 13
Published: over 3 years ago

10.1371/journal.pone.0250817

#MaskOn! #MaskOff! Digital polarization of mask-wearing in the United States during COVID-19
Cited by: 48
Author(s): Jun Lang, Wesley W. Erickson, Zhuo Jing–Schmidt
Software Mentions: 13
Published: over 3 years ago

10.3389/fmolb.2021.689224

Immune-Related lncRNA Signature for Predicting the Immune Landscape of Head and Neck Squamous Cell Carcinoma
Cited by: 13
Author(s): Yin Ji, Xiaohui Li, Caifeng Lv, Xian He, Xiaoqin Luo, Sen Li, Wenjian Hu
Software Mentions: 13
Published: over 3 years ago

10.3389/fgene.2021.690530

Predicting the Survival and Immune Landscape of Colorectal Cancer Patients Using an Immune-Related lncRNA Pair Model
Cited by: 3
Author(s): Chi Ma, Xin Zhang, Xudong Zhao, Nan Zhang, Sixin Zhou, Yonghui Zhang, Peiyu Li
Software Mentions: 13
Published: about 3 years ago

10.3390/v13061184

Age and Infectious Dose Significantly Affect Disease Progression after RHDV2 Infection in Naïve Domestic Rabbits
Cited by: 13
Author(s): Robyn N. Hall, Tegan King, Tiffany W. O’Connor, Andrew J. Read, Jane Arrow, Katherine Trought, Janine A. Duckworth, M. Treuting Piper, Tanja Strive
Software Mentions: 13
Published: over 3 years ago

10.1371/journal.pcbi.1008896

Multilevel selection favors fragmentation modes that maintain cooperative interactions in multispecies communities
Cited by: 8
Author(s): Gil J. B. Henriques, Simon van Vliet, Michael Doebeli
Software Mentions: 13
Published: about 3 years ago

10.1371/journal.pone.0193437

Delineating modern variation from extinct morphology in the fossil record using shells of the Eastern Box Turtle (Terrapene carolina)
Cited by: 8
Author(s): Natasha Vitek
Software Mentions: 13
Published: over 6 years ago

10.1038/s41598-020-73812-8

Synbiotic feed supplementation significantly improves lipid utilization and shows discrete effects on disease resistance in rainbow trout (Oncorhynchus mykiss)
Cited by: 10
Author(s): Kasper Rømer Villumsen, Maki Ohtani, Torunn Forberg, Elisabeth Aasum, John Tinsley, Anders Miki Bojesen
Software Mentions: 12
Published: about 4 years ago

10.1186/s12915-016-0258-1

The native microbiome of the nematode Caenorhabditis elegans: gateway to a new host-microbiome model
Cited by: 283
Author(s): Philipp Dirksen, Sarah Arnaud Marsh, Ines Braker, Nele Heitland, Sophia Wagner, Rania Nakad, Sebastian Mäder, Carola Petersen, Vienna Kowallik, Philip Rosenstiel, Marie‐Anne Félix, Hinrich Schulenburg
Software Mentions: 12
Published: over 8 years ago

10.1002/cam4.4126

Hypoxia‐related lncRNAs to build prognostic classifier and reveal the immune characteristics of EGFR wild type and low expression of PD‐L1 squamous and adenocarcinoma NSCLC
Cited by: 4
Author(s): Fang Zhao, Min Wang, Jie Zhu
Software Mentions: 12
Published: over 3 years ago

10.3390/cells10051066

Integrated microRNA and mRNA Expression Profiling Identifies Novel Targets and Networks Associated with Ebstein’s Anomaly
Cited by: 5
Author(s): Masood Abu‐Halima, Viktoria Wagner, Lea Simone Becker, Basim Ayesh, Mohammed Abd El-Rahman, Ulrike Fischer, Eckart Meese, Hashim Abdul‐Khaliq
Software Mentions: 12
Published: over 3 years ago

10.15252/emmm.201809443

<scp>PDX</scp> models recapitulate the genetic and epigenetic landscape of pediatric T‐cell leukemia
Cited by: 35
Author(s): Paulina Richter-Pechańska, Joachim Kunz, Beat Bornhäuser, Caroline Von Knebel Doeberitz, Tobias Rausch, Büşra Erarslan-Uysal, Yassen Assenov, Viktoras Frismantas, Blerim Marovca, Sebastian M. Waszak, Martin Zimmermann, Julia Seemann, Margit Happich, Martin Stanulla, Martin Schrappe, Gunnar Cario, Gabriele Escherich, Kseniya Bakharevich, Renate Kirschner-Schwabe, Cornelia Eckert, Martina U. Muckenthaler, Jan O. Korbel, Jean‐Pierre Bourquin, Andreas E. Kulozik
Software Mentions: 12
Published: about 6 years ago

10.1155/2021/4743971

Exploration of the Immune-Related Signatures and Immune Infiltration Analysis in Melanoma
Cited by: 0
Author(s): Ai-lan Li, Yong‐Mei Zhu, Lai-qiang Gao, Shuyue Wei, Mingtao Wang, Qiang Ma, Yuanna Zheng, Jianhua Li, Qingfeng Wang
Software Mentions: 12
Published: almost 4 years ago

10.3390/jcm9082591

Risk of Adverse Drug Events Following the Virtual Addition of COVID-19 Repurposed Drugs to Drug Regimens of Frail Older Adults with Polypharmacy
Cited by: 14
Author(s): Sweilem B. Al Rihani, Matt K. Smith, Ravil Bikmetov, Malavika Deodhar, Pamela Dow, Jacques Turgeon, Véronique Michaud
Software Mentions: 11
Published: over 4 years ago

10.2196/10754

Predicting Adherence to Internet-Delivered Psychotherapy for Symptoms of Depression and Anxiety After Myocardial Infarction: Machine Learning Insights From the U-CARE Heart Randomized Controlled Trial
Cited by: 44
Author(s): John Wallert, Emelie Gustafson, Claes Held, Guy Madison, Fredrika Norlund, Louise von Essén, Erik Olsson
Software Mentions: 11
Published: about 6 years ago

10.1186/s12866-020-02075-0

Environmental parameters and microbial community profiles as indication towards microbial activities and diversity in aquaponic system compartments
Cited by: 11
Author(s): Zala Schmautz, Carlos Espinal, Andrea M. Bohny, Fabio Rezzonico, Ranka Junge, Emmanuel Frossard, Theo H. M. Smits
Software Mentions: 11
Published: almost 4 years ago

10.3390/foods10010143

Intramuscular Fat Prediction Using Color and Image Analysis of Bísaro Pork Breed
Cited by: 7
Author(s): Alfredo Teixeira, Severiano Silva, Marianne Hasse, José Almeida, Luís G. Dias
Software Mentions: 11
Published: almost 4 years ago

10.1038/srep26929

High-throughput and Cost-effective Chicken Genotyping Using Next-Generation Sequencing
Cited by: 43
Author(s): Fábio Pértille, Carlos Guerrero-Bosagna, Vinícius da Silva, Clarissa Boschiero, José de Ribamar da Silva Nunes, Mônica Corrêa Ledur, Per Jensen, Luiz Lehmann Coutinho
Software Mentions: 11
Published: over 8 years ago

10.3389/fpsyg.2021.638659

Syllable Complexity and Morphological Synthesis: A Well-Motivated Positive Complexity Correlation Across Subdomains
Cited by: 2
Author(s): Shelece Easterday, Matthew Stave, Marc Allassonnière-Tang, Frank Seifart
Software Mentions: 11
Published: over 3 years ago

10.3389/fmicb.2021.634503

Cottonseed Press Cake as a Potential Diet for Industrially Farmed Black Soldier Fly Larvae Triggers Adaptations of Their Bacterial and Fungal Gut Microbiota
Cited by: 26
Author(s): Dorothee Tegtmeier, Sabine Hurka, Patrick Klüber, Karina Brinkrolf, Philipp Heise, Andreas Vilcinskas
Software Mentions: 10
Published: over 3 years ago

10.3389/fgene.2021.695130

A Novel Signature Constructed by Immune-Related LncRNA Predicts the Immune Landscape of Colorectal Cancer
Cited by: 7
Author(s): Mengyu Sun, Tongyue Zhang, Yijun Wang, Wenjie Huang, Limin Xia
Software Mentions: 10
Published: over 3 years ago

10.1371/journal.pone.0204484

Using museum specimens to estimate broad-scale species richness: Exploring the performance of individual-based and spatially explicit rarefaction
Cited by: 0
Author(s): Oyomoare L. Osazuwa‐Peters, W D Stevens, Iván Jiménez
Software Mentions: 10
Published: about 6 years ago

10.1371/journal.pone.0185171

Interactions affect hyphal growth and enzyme profiles in combinations of coniferous wood-decaying fungi of Agaricomycetes
Cited by: 29
Author(s): Tuulia Mali, Jaana Kuuskeri, Firoz Shah, Taina Lundell
Software Mentions: 10
Published: about 7 years ago

10.1371/journal.pone.0222547

Endothelial dysfunction and low-grade inflammation in the transition to renal replacement therapy
Cited by: 13
Author(s): April C.E. van Gennip, Natascha J. H. Broers, Karlien J. ter Meulen, Bernard Canaud, Maarten H. L. Christiaans, T. Cornelis, M. Gelens, Marc Hermans, Constantijn Konings, Jeroen B. van der Net, Frank M. van der Sande, Casper G. Schalkwijk, Frank Stifft, Joris J. J. M. Wirtz, Jeroen P. Kooman, Remy J H Martens
Software Mentions: 9
Published: about 5 years ago

10.1186/s12859-021-04020-y

MeltingPlot, a user-friendly online tool for epidemiological investigation using High Resolution Melting data
Cited by: 4
Author(s): Matteo Perini, Gherard Batisti Biffignandi, Domenico Di Carlo, Ajay Ratan Pasala, Aurora Piazza, Simona Panelli, Gian Vincenzo Zuccotti, Francesco Comandatore
Software Mentions: 9
Published: almost 4 years ago

10.1371/journal.pone.0242826

Can post-capture photographic identification as a wildlife marking technique be undermined by observer error? A case study using King Cobras in northeast Thailand
Cited by: 0
Author(s): Max Dolton Jones, Benjamin Michael Marshall, Samantha Nicole Smith, Jack Taylor Christie, Surachit Waengsothorn, Taksin Artchawakom, Pongthep Suwanwaree, Colin Thomas Strine
Software Mentions: 9
Published: almost 4 years ago

10.2196/27163

Variation of Daily Care Demand in Swiss General Hospitals: Longitudinal Study on Capacity Utilization, Patient Turnover and Clinical Complexity Levels
Cited by: 5
Author(s): Narayan Sharma, René Schwendimann, Olga Endrich, Dietmar Ausserhofer, Michaël Simon
Software Mentions: 9
Published: over 3 years ago

10.1073/pnas.2100542118

Self-mediated positive selection of T cells sets an obstacle to the recognition of nonself
Cited by: 9
Author(s): Balázs Koncz, Gergő Mihály Balogh, Benjamin Tamás Papp, Leó Asztalos, Lajos Kemény, Máté Manczinger
Software Mentions: 9
Published: about 3 years ago

10.3390/v11100910

Host Range of Bacteriophages Against a World-Wide Collection of Erwinia amylovora Determined Using a Quantitative PCR Assay
Cited by: 14
Author(s): Steven Gayder, Michael Parcey, Alan J. Castle, A. M. Svircev
Software Mentions: 9
Published: about 5 years ago

10.1038/srep46112

Large-scale SNP discovery and construction of a high-density genetic map of Colossoma macropomum through genotyping-by-sequencing
Cited by: 31
Author(s): José de Ribamar da Silva Nunes, Shikai Liu, Fábio Pértille, Caio Augusto Perazza, Priscilla Marqui Schmidt Villela, Vera Maria Fonseca de Almeida-Val, Alexandre Wagner Silva Hilsdorf, Zhanjiang Liu, Luiz Lehmann Coutinho
Software Mentions: 9
Published: over 7 years ago

10.15698/mic2021.08.757

Genome, transcriptome and secretome analyses of the antagonistic, yeast-like fungus Aureobasidium pullulans to identify potential biocontrol genes
Cited by: 13
Author(s): Maria Paula Rueda‐Mejia, Lukas Nägeli, Stefanie Lutz, Richard D. Hayes, Adithi R. Varadarajan, Igor V. Grigoriev, Christian H. Ahrens, Florian M. Freimoser
Software Mentions: 9
Published: over 3 years ago

10.3390/ijms22073411

Insights of Phenolic Pathway in Fruits: Transcriptional and Metabolic Profiling in Apricot (Prunus armeniaca)
Cited by: 6
Author(s): Helena Gómez-Martínez, Francisco Gil-Muñoz, Almudena Bermejo, Elena Zuriaga, M. L. Badenes
Software Mentions: 9
Published: over 3 years ago

10.3390/ijerph18010318

Mapping the Scientific Landscape of Diabetes Research in Malaysia (2000–2018): A Systematic Scientometrics Study
Cited by: 5
Author(s): Kurubaran Ganasegeran, Chee Peng Hor, Mohd Fadzly Amar Jamil, Purnima Devi Suppiah, Juliana Mohd Noor, Norshahida Abdul Hamid, Deik Roy Chuan, Mohd Rizal Abdul Manaf, Alan Swee Hock Ch’ng, Irene Looi
Software Mentions: 9
Published: almost 4 years ago

10.7717/peerj.8303

TRANSPARENT TESTA GLABRA 1 participates in flowering time regulation in<i>Arabidopsis thaliana</i>
Cited by: 5
Author(s): Barbara A M Paffendorf, Rawan Qassrawi, Andrea M Meys, Laura Trimborn, Andrea Schrader
Software Mentions: 8
Published: almost 5 years ago

10.3390/cancers12030756

Analysis of Dual Class I Histone Deacetylase and Lysine Demethylase Inhibitor Domatinostat (4SC-202) on Growth and Cellular and Genomic Landscape of Atypical Teratoid/Rhabdoid
Cited by: 23
Author(s): Mariah M. Hoffman, Jessica S. Zylla, Somshuvra Bhattacharya, Kristin Calar, Timothy W. Hartman, Ratan D. Bhardwaj, W. Keith Miskimins, Pilar de la Puente, Etienne Z. Gnimpieba, Shanta M. Messerli
Software Mentions: 8
Published: over 4 years ago

10.1038/s41598-017-09084-6

Taxonomic bias in biodiversity data and societal preferences
Cited by: 397
Author(s): Julien Troudet, Philippe Grandcolas, Amandine Blin, Régine Vignes-Lebbe, Frédéric Legendre
Software Mentions: 8
Published: over 7 years ago

10.1186/s13071-018-3280-z

Probability of dengue transmission and propagation in a non-endemic temperate area: conceptual model and decision risk levels for early alert, prevention and control
Cited by: 13
Author(s): Cecilia Marques-Toledo, Maria Mercedes de Almeida Bendati, Cláudia Torres Codeço, Mauro Martins Teixeira
Software Mentions: 8
Published: almost 6 years ago

10.3389/fmolb.2019.00005

Alternative Splicing of MXD3 and Its Regulation of MXD3 Levels in Glioblastoma
Cited by: 10
Author(s): Tin Ngo, Abraham Corrales, Traci Bourne, Samir Elmojahid, Kit S. Lam, Elizabeth Díaz
Software Mentions: 8
Published: almost 6 years ago

10.1016/j.molcel.2021.03.041

DNAJC9 integrates heat shock molecular chaperones into the histone chaperone network
Cited by: 28
Author(s): Colin M. Hammond, Hongyu Bao, Ivo A. Hendriks, Massimo Carraro, Alberto García-Nieto, Yanhong Liu, Nazaret Reverón-Gómez, Christos Spanos, Liu Chen, Juri Rappsilber, Michael L. Nielsen, Dinshaw J. Patel, Hongda Huang, Anja Groth
Software Mentions: 8
Published: over 3 years ago

10.3390/genes11010066

Genome Resolved Biogeography of Mamiellales
Cited by: 19
Author(s): Jade Leconte, L. Felipe Benites, Thomas Vannier, Patrick Wincker, Gwenaël Piganeau, Olivier Jaillon
Software Mentions: 8
Published: almost 5 years ago

10.3390/v12111240

TBEV Subtyping in Terms of Genetic Distance
Cited by: 19
Author(s): Andrei A. Deviatkin, Galina G. Karganova, Yulia A. Vakulenko
Software Mentions: 8
Published: about 4 years ago

10.3390/cancers13112782

Early Survival Prediction Framework in CD19-Specific CAR-T Cell Immunotherapy Using a Quantitative Systems Pharmacology Model
Cited by: 16
Author(s): Anna Mueller‐Schoell, Nahum Puebla-Osorio, Robin Michelet, Michael R. Green, Annette Künkele, Wilhelm Huisinga, Paolo Strati, Beth Chasen, Sattva S. Neelapu, Cassian Yee, Charlotte Kloft
Software Mentions: 8
Published: over 3 years ago

10.3389/fcvm.2019.00167

SS-31 Peptide Reverses the Mitochondrial Fragmentation Present in Fibroblasts From Patients With DCMA, a Mitochondrial Cardiomyopathy
Cited by: 21
Author(s): Pranav Machiraju, Xuemei Wang, Rasha Sabouny, Joshua Huang, Tian Zhao, Fatima Iqbal, Melissa A. King, Dimple Prasher, A Lodha, Nerea Jimenez-Tellez, Amir Ravandi, Bob Argiropoulos, David S. Sinasac, Aneal Khan, Timothy E. Shutt, Steven C. Greenway
Software Mentions: 8
Published: about 5 years ago

10.1371/journal.pntd.0005729

Dengue prediction by the web: Tweets are a useful tool for estimating and forecasting Dengue at country and city level
Cited by: 70
Author(s): Cecilia Marques-Toledo, Carolin Marlen Degener, Livia Vinhal, Giovanini Evelim Coelho, Wagner Meira, Cláudia Torres Codeço, Mauro Martins Teixeira
Software Mentions: 7
Published: over 7 years ago

10.1371/journal.pone.0233309

Short Report: Asymptomatic Zika virus infections with low viral loads not likely to establish transmission in New Orleans Aedes populations
Cited by: 0
Author(s): Matthew J. Ward, Brendan H Carter, Christine Walsh, Joshua Yukich, Dawn M. Wesson, Rebecca C. Christofferson
Software Mentions: 7
Published: over 4 years ago

10.2196/15554

Longitudinal Study of the Variation in Patient Turnover and Patient-to-Nurse Ratio: Descriptive Analysis of a Swiss University Hospital
Cited by: 11
Author(s): Sarah N. Musy, Olga Endrich, Alexander Benedikt Leichtle, Peter Griffiths, Christos T. Nakas, Michaël Simon
Software Mentions: 7
Published: over 4 years ago

10.1590/0074-02760190105

Gene regulatory network inference and analysis of multidrug-resistant Pseudomonas aeruginosa
Cited by: 5
Author(s): Fernando Medeiros Filho, Ana Paula Barbosa do Nascimento, M. Tadeu dos Santos, Ana Paula D’Alincourt Carvalho-Assef, Fabrício Silva
Software Mentions: 7
Published: almost 6 years ago

10.3390/insects9040174

Drifting Phenologies Cause Reduced Seasonality of Butterflies in Response to Increasing Temperatures
Cited by: 5
Author(s): Zachariah J. Gezon, Rebekah J. Lindborg, Anne Savage, Jaret C. Daniels
Software Mentions: 7
Published: almost 6 years ago

10.3390/ijerph15020250

Using Twitter to Better Understand the Spatiotemporal Patterns of Public Sentiment: A Case Study in Massachusetts, USA
Cited by: 32
Author(s): Xiaodong Cao, Piers MacNaughton, Zhengyi Deng, Jie Yin, Xi Zhang, Joseph G. Allen
Software Mentions: 7
Published: almost 7 years ago

10.1186/s40425-018-0326-x

Measuring multiple parameters of CD8+ tumor-infiltrating lymphocytes in human cancers by image analysis
Cited by: 67
Author(s): Keith Steele, Tze Heng Tan, R Korn, Karma Dacosta, Charles O. Brown, Michael Kuziora, Johannes Zimmermann, Brian Laffin, Moritz Widmaier, Lorenz Rognoni, Rubén Cárdenes, Katrin Schneider, Anmarie Boutrin, Philip Martin, Jiping Zha, Tobias Wiestler
Software Mentions: 7
Published: over 6 years ago

10.1038/s41598-020-69268-5

Molecular malaria surveillance using a novel protocol for extraction and analysis of nucleic acids retained on used rapid diagnostic tests
Cited by: 8
Author(s): Etienne A Guirou, Tobias Schindler, Salome Hosch, Olivier Trésor Donfack, Charlene Aya Yoboue, Silvan Krähenbühl, Anna Deal, Glenda Cosi, Linda Gondwe, Grace Mwangoka, Heavenlight Masuki, Nahya Salim, Maxmillian Mpina, Said Jongo, Salim Abdulla, Stephen L. Hoffman, Bonifacio Manguire Nlavo, Carl D. Maas, Carlos Cortes Falla, Wonder P. Phiri, Guillermo A. García, Marcel Tanner, Claudia Daubenberger
Software Mentions: 6
Published: over 4 years ago

10.1186/s13073-019-0644-8

Clinical utility of custom-designed NGS panel testing in pediatric tumors
Cited by: 77
Author(s): Lea F. Surrey, Suzanne P. MacFarland, Fengqi Chang, Ke Cao, Komal S. Rathi, Gozde Akgumus, Daniel Gallo, Fumin Lin, Adam Gleason, Pichai Raman, Richard Aplenc, Rochelle Bagatell, Jane E. Minturn, Yaël P. Mossé, Mariarita Santi, Sarah K. Tasian, Angela J. Waanders, Mahdi Sarmady, John M. Maris, Stephen P. Hunger, Marilyn M. Li
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms8091449

Population Dynamics between Erwinia amylovora, Pantoea agglomerans and Bacteriophages: Exploiting Synergy and Competition to Improve Phage Cocktail Efficacy
Cited by: 18
Author(s): Steven Gayder, Michael Parcey, Darlene Nesbitt, Alan J. Castle, A. M. Svircev
Software Mentions: 6
Published: about 4 years ago

10.1371/journal.pone.0224123

Clonal diversity and spatial genetic structure in the long-lived herb, Prairie trillium
Cited by: 2
Author(s): Jennifer R. Mandel, C. Kendall Major, Randall J. Bayer, James E. Moore
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0222898

Bayesian hierarchical models for disease mapping applied to contagious pathologies
Cited by: 7
Author(s): Sylvain Coly, Myriam Garrido, David Abrial, Anne-Françoise Yao
Software Mentions: 6
Published: almost 4 years ago

10.5194/amt-11-4605-2018

Long-term evaluation of air sensor technology under ambient conditions in Denver, Colorado
Cited by: 51
Author(s): Stephen N Feinberg, Ron Williams, Gayle Hagler, Joshua Rickard, Ryan Brown, Daniel Garver, Greg Harshfield, Phillip Stauffer, Eric C. Mattson, Robert Judge, Sam Garvey
Software Mentions: 6
Published: over 6 years ago

10.1186/s13567-016-0374-5

Identification of epitopes recognised by mucosal CD4+ T-cell populations from cattle experimentally colonised with Escherichia coli O157:H7
Cited by: 7
Author(s): Alexander Corbishley, Timothy Connelley, E Wolfson, Keith T. Ballingall, Amy Elizabeth Beckett, David L. Gally, Tom N. McNeilly
Software Mentions: 6
Published: about 8 years ago

10.1371/journal.pone.0238527

Multiple decrement life tables of Cephus cinctus Norton (Hymenoptera: Cephidae) across a set of barley cultivars: The importance of plant defense versus cannibalism
Cited by: 3
Author(s): Buddhi B Achhami, Robert K. D. Peterson, Jamie Sherman, Gadi V. P. Reddy, David K. Weaver
Software Mentions: 6
Published: about 4 years ago

10.1038/s41598-018-23913-2

Analysis of HIV-1 envelope evolution suggests antibody-mediated selection of common epitopes among Chinese former plasma donors from a narrow-source outbreak
Cited by: 3
Author(s): Sophie Andrews, Yonghong Zhang, Tao Dong, Sarah Rowland‐Jones, Sunetra Gupta, Joakim Esbjörnsson
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0200462

Is increased colorectal screening effective in preventing distant disease?
Cited by: 5
Author(s): Gaius J. Augustus, Denise J. Roe, Elizabeth T. Jacobs, Peter Lance, Nathan A. Ellis
Software Mentions: 6
Published: over 6 years ago

10.1186/s12889-021-10989-1

Health indicators on adolescents reveal disparity and inequality on regional and national levels
Cited by: 3
Author(s): Mengqiao Wang
Software Mentions: 5
Published: over 3 years ago

10.3389/fonc.2021.643503

Transcriptome Analyses Identify a Metabolic Gene Signature Indicative of Antitumor Immunosuppression of EGFR Wild Type Lung Cancers With Low PD-L1 Expression
Cited by: 1
Author(s): Min Wang, Jie Zhu, Fang Zhao, Jiani Xiao
Software Mentions: 5
Published: about 3 years ago

10.1186/s13104-018-3221-0

Proteome-wide comparison between the amino acid composition of domains and linkers
Cited by: 19
Author(s): Daniel C. Brune, Miguel A. Andrade‐Navarro, Pablo Mier
Software Mentions: 5
Published: almost 7 years ago

10.1038/s41598-020-70206-8

Remote, autonomous real-time monitoring of environmental DNA from commercial fish
Cited by: 28
Author(s): Brian Klitgaard Hansen, Marianne Jacobsen, Anne Lise Middelboe, Christina M. Preston, Roman Marin, Dorte Bekkevold, Steen Wilhelm Knudsen, Peter Rask Møller, Einar Eg Nielsen
Software Mentions: 5
Published: over 4 years ago

10.1111/eva.12960

Genomic insights into historical population dynamics, local adaptation, and climate change vulnerability of the East Asian Tertiary relict <i>Euptelea</i> (Eupteleaceae)
Cited by: 12
Author(s): Yanan Cao, Shanshan Zhu, Jun Chen, Hans Peter Comes, Ian Wang, Luyao Chen, Shota Sakaguchi, Ying‐Xiong Qiu
Software Mentions: 5
Published: over 4 years ago

10.1002/ece3.6120

To clean or not to clean: Cleaning mutualism breakdown in a tidal environment
Cited by: 7
Author(s): Katie Dunkley, Ashley J. W. Ward, Sarah E. Perkins, Joanne Cable
Software Mentions: 5
Published: over 4 years ago

10.3389/fonc.2021.667658

Immunophenotyping Reveals Longitudinal Changes in Circulating Immune Cells During Radium-223 Therapy in Patients With Metastatic Castration-Resistant Prostate Cancer
Cited by: 6
Author(s): Jeroen H A Creemers, Maarten J. van der Doelen, Sandra van Wilpe, Rick Hermsen, Tjitske Duiveman-de Boer, Diederik M. Somford, Marcel J.R. Janssen, J.P. Michiel Sedelaar, Niven Mehra, Johannes Textor, Harm Westdorp
Software Mentions: 4
Published: over 3 years ago

10.26451/abc.08.02.14.2021

Replications, Comparisons, Sampling and the Problem of Representativeness in Animal Cognition Research
Cited by: 9
Author(s): Benjamin G. Farrar, Konstantinos Voudouris, Nicola S. Clayton
Software Mentions: 4
Published: over 3 years ago

10.3390/microorganisms9071495

Resilience of Microbial Communities after Hydrogen Peroxide Treatment of a Eutrophic Lake to Suppress Harmful Cyanobacterial Blooms
Cited by: 15
Author(s): Tim Piel, Giovanni Sandrini, Gerard Muyzer, Corina P. D. Brussaard, Pieter C. Slot, Maria J. van Herk, Jef Huisman, P. Visser
Software Mentions: 4
Published: over 3 years ago

10.3389/fpubh.2020.00396

Effects of Installing Height-Adjustable Standing Desks on Daily and Domain-Specific Duration of Standing, Sitting, and Stepping in 3rd Grade Primary School Children
Cited by: 3
Author(s): Ole Sprengeler, Antje Hebestreit, Hannah Gohres, Jens Bucksch, Christoph Buck
Software Mentions: 4
Published: over 4 years ago

10.3390/v11040377

Determining the Replication Kinetics and Cellular Tropism of Influenza D Virus on Primary Well-Differentiated Human Airway Epithelial Cells
Cited by: 32
Author(s): Melle Holwerda, Jenna N. Kelly, Laura Laloli, Isabel Stürmer, Jasmine Portmann, Hanspeter Stalder, Ronald Dijkman
Software Mentions: 4
Published: over 5 years ago

10.3390/ijerph18031202

Latent Variables Quantifying Neighborhood Characteristics and Their Associations with Poor Mental Health
Cited by: 5
Author(s): Katherine L. Forthman, Janna Colaizzi, Hung‐Wen Yeh, Rayus Kuplicki, Martin P. Paulus
Software Mentions: 4
Published: almost 4 years ago

Projects: cran: scales

Papers Mentioning scales 104