Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/1471-2156-15-81

https://doi.org/10.1186/1471-2156-15-81

Copy number polymorphisms near SLC2A9 are associated with serum uric acid concentrations

Cited by: 16
Author(s): Robert B. Scharpf, Lynn Mireles, Qiong Yang, Anna Köttgen, Ingo Ruczinski, Katalin Suszták, Eitan Halper-Stromberg, Adrienne Tin, Stephen Cristiano, Aravinda Chakravarti, Eric Boerwinkle, Caroline S. Fox, Josef Coresh, W. H. Linda Kao
Published: almost 11 years ago

Software Mentions 56

bioconductor: affxparser
Affymetrix File Parsing SDK
Papers that mentioned: 13
bioconductor: affyio
Tools for parsing Affymetrix data files
Papers that mentioned: 5
bioconductor: Biobase
Biobase: Base functions for Bioconductor
Papers that mentioned: 104
bioconductor: BiocGenerics
S4 generic functions used in Bioconductor
Papers that mentioned: 15
bioconductor: Biostrings
Efficient manipulation of biological strings
Papers that mentioned: 220
bioconductor: GenomeInfoDb
Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
Papers that mentioned: 7
bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
bioconductor: ggbio
Visualization tools for genomic data
Papers that mentioned: 53
bioconductor: IRanges
Foundation of integer range manipulation in Bioconductor
Papers that mentioned: 62
bioconductor: oligo
Preprocessing tools for oligonucleotide arrays
Papers that mentioned: 204
bioconductor: oligoClasses
Classes for high-throughput arrays supported by oligo and crlmm
Papers that mentioned: 3
bioconductor: preprocessCore
A collection of pre-processing functions
Papers that mentioned: 146
bioconductor: XVector
Foundation of external vector representation and manipulation in Bioconductor
Papers that mentioned: 3
cran: bit
Classes and Methods for Fast Memory-Efficient Boolean Selections
Papers that mentioned: 3
cran: codetools
Code Analysis Tools for R
Papers that mentioned: 3
cran: devtools
Tools to Make Developing R Packages Easier
Papers that mentioned: 157
cran: ff
Memory-Efficient Storage of Large Data on Disk and Fast Access Functions
Papers that mentioned: 14
cran: foreach
Provides Foreach Looping Construct
Papers that mentioned: 50
cran: formatR
Format R Code Automatically
Papers that mentioned: 3
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: gridExtra
Miscellaneous Functions for "Grid" Graphics
Papers that mentioned: 298
cran: gtable
Arrange 'Grobs' in Tables
Papers that mentioned: 15
cran: gtools
Various R Programming Tools
Papers that mentioned: 60
cran: knitr
A General-Purpose Package for Dynamic Report Generation in R
Papers that mentioned: 157
cran: lattice
Trellis Graphics for R
Papers that mentioned: 251
cran: latticeExtra
Extra Graphical Utilities Based on Lattice
Papers that mentioned: 60
cran: lme4
Linear Mixed-Effects Models using 'Eigen' and S4
Papers that mentioned: 9,267
cran: MASS
Support Functions and Datasets for Venables and Ripley's MASS
Papers that mentioned: 2,353
cran: Matrix
Sparse and Dense Matrix Classes and Methods
Papers that mentioned: 172
cran: memoise
'Memoisation' of Functions
Papers that mentioned: 1
cran: minqa
Derivative-Free Optimization Algorithms by Quadratic Approximation
Papers that mentioned: 4
cran: munsell
Utilities for Using Munsell Colours
Papers that mentioned: 2
cran: nlme
Linear and Nonlinear Mixed Effects Models
Papers that mentioned: 3,265
cran: plyr
Tools for Splitting, Applying and Combining Data
Papers that mentioned: 468
cran: proto
Prototype Object-Based Programming
Papers that mentioned: 5
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
cran: Rcpp
Seamless R and C++ Integration
Papers that mentioned: 152
cran: RcppEigen
'Rcpp' Integration for the 'Eigen' Templated Linear Algebra Library
Papers that mentioned: 12
cran: RCurl
General Network (HTTP/FTP/...) Client Interface for R
Papers that mentioned: 36
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
cran: RSQLite
SQLite Interface for R
Papers that mentioned: 27
cran: scales
Scale Functions for Visualization
Papers that mentioned: 104
cran: stringr
Simple, Consistent Wrappers for Common String Operations
Papers that mentioned: 172
pypi: bit
Bitcoin made easy.
Papers that mentioned: 3
pypi: codetools
code analysis and execution tools
Papers that mentioned: 3
pypi: devtools
Python's missing debug print command, and more.
Papers that mentioned: 157
pypi: ff
A kit for files finding
Papers that mentioned: 14
pypi: gtable
A fast table-like container for data analytics
Papers that mentioned: 15
pypi: lattice
A framework for developing data models, including schema development and documentation.
Papers that mentioned: 251
pypi: memoise
Memoise decorator.
Papers that mentioned: 1
pypi: oligo
UNOFFICIAL Python client for i-DE
Papers that mentioned: 204
pypi: plyr
UNKNOWN
Papers that mentioned: 468
pypi: proto

Papers that mentioned: 5
pypi: scales
Stats for Python processes
Papers that mentioned: 104
pypi: splines
Splines in Euclidean Space and Beyond
Papers that mentioned: 91
pypi: XVector
Package for XVector API access
Papers that mentioned: 3