Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: affxparser

https://packages.ecosyste.ms/registries/bioconductor.org/packages/affxparser

Affymetrix File Parsing SDK
1 version
Latest release: about 1 year ago
10 dependent packages
306,233 downloads total

Papers Mentioning affxparser 13

10.1186/1471-2156-15-81
Copy number polymorphisms near SLC2A9 are associated with serum uric acid concentrations
Cited by: 16
Author(s): Robert B. Scharpf, Lynn Mireles, Qiong Yang, Anna Köttgen, Ingo Ruczinski, Katalin Suszták, Eitan Halper-Stromberg, Adrienne Tin, Stephen Cristiano, Aravinda Chakravarti, Eric Boerwinkle, Caroline S. Fox, Josef Coresh, W. H. Linda Kao
Software Mentions: 56
Published: almost 11 years ago
10.1186/s12864-021-07370-2
GCSscore: an R package for differential gene expression analysis in Affymetrix/Thermo-Fisher whole transcriptome microarrays
Cited by: 3
Author(s): Guy M. Harris, Shahroze Abbas, Michael F. Miles
Software Mentions: 17
Published: almost 4 years ago
10.1186/1471-2105-11-194
Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data
Cited by: 32
Author(s): Benedikt Zacher, Pei Fen Kuan, Achim Tresch
Software Mentions: 12
Published: over 14 years ago
10.1002/1878-0261.12595
Aberrant expression of RSK1 characterizes high‐grade gliomas with immune infiltration
Cited by: 14
Author(s): Glaucia Noeli Maroso Hajj, Fernanda F. da Silva, Bárbara de Bellis, Fernanda C. S. Lupinacci, Hermano Martins Bellato, Juvanier R. Cruz, Claudionor Nogueira Costa Segundo, Igor Vilela Faquini, Leuridan Cavalcante Torres, Paulo Sanematsu, María Dirlei Begnami, Vilma R. Martins, Martín Roffé
Software Mentions: 9
Published: almost 5 years ago
10.12688/f1000research.2-264.v1
illuminaio: An open source IDAT parsing tool for Illumina microarrays
Cited by: 59
Author(s): Mike L. Smith, Keith A. Baggerly, Henrik Bengtsson, Matthew E. Ritchie, Kasper D. Hansen
Software Mentions: 9
Published: almost 11 years ago
10.1186/1471-2105-13-222
Wavelet-based detection of transcriptional activity on a novel Staphylococcus aureus tiling microarray
Cited by: 3
Author(s): Víctor Segura, Alejandro Toledo‐Arana, Maite Uzqueda, Íñigo Lasa, Arrate Muñoz-Barrutia
Software Mentions: 8
Published: about 12 years ago
10.1371/journal.pone.0052299
Cell-Type Specific DNA Methylation Patterns Define Human Breast Cellular Identity
Cited by: 22
Author(s): Petr Novák, Martha R. Stampfer, José L. Muñoz-Rodríguez, James C. Garbe, Mathias Ehrich, Bernard W. Futscher, Taylor J. Jensen
Software Mentions: 6
Published: almost 12 years ago
10.1186/1471-2105-12-136
ArrayInitiative - a tool that simplifies creating custom Affymetrix CDFs
Cited by: 2
Author(s): Chris Overall, Denis Carr, Ehsan Tabari, Kevin J. Thompson, Juliane Weller
Software Mentions: 4
Published: over 13 years ago
10.1371/journal.pgen.1005101
The Fun30 Chromatin Remodeler Fft3 Controls Nuclear Organization and Chromatin Structure of Insulators and Subtelomeres in Fission Yeast
Cited by: 52
Author(s): Babett Steglich, Annelie Strålfors, Olga Khorosjutina, Jenna Persson, Agata Smialowska, J.P. Javerzat, Karl Ekwall
Software Mentions: 3
Published: over 9 years ago
10.3390/genes8100243
Genetic Association between Amyotrophic Lateral Sclerosis and Cancer
Cited by: 20
Author(s): Y-h. Taguchi, Hsiuying Wang
Software Mentions: 2
Published: about 7 years ago
10.1186/1471-2105-10-156
Differential splicing using whole-transcript microarrays
Cited by: 17
Author(s): Mark D. Robinson, Terence P. Speed
Software Mentions: 2
Published: over 15 years ago
10.1186/s12864-017-4266-5
Framework for reanalysis of publicly available Affymetrix® GeneChip® data sets based on functional regions of interest
Cited by: 4
Author(s): Ernur Saka, Benjamin J. Harrison, Kirk West, Jeffrey C. Petruska, Eric C. Rouchka
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pbio.1001155
Transcriptome Analysis of the Arabidopsis Megaspore Mother Cell Uncovers the Importance of RNA Helicases for Plant Germline Development
Cited by: 120
Author(s): Anja Schmidt, Samuel E. Wuest, Kitty Vijverberg, Célia Baroux, Daniela Kleen, Ueli Grossniklaus
Software Mentions: 2
Published: about 13 years ago