Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: affxparser
https://packages.ecosyste.ms/registries/bioconductor.org/packages/affxparser
Affymetrix File Parsing SDK
1 version
Latest release: 7 months ago
10 dependent packages
306,233 downloads total
Papers Mentioning affxparser 13
10.1186/1471-2156-15-81
Copy number polymorphisms near SLC2A9 are associated with serum uric acid concentrationsCited by: 16
Author(s): Robert B. Scharpf, Lynn Mireles, Qiong Yang, Anna Köttgen, Ingo Ruczinski, Katalin Suszták, Eitan Halper-Stromberg, Adrienne Tin, Stephen Cristiano, Aravinda Chakravarti, Eric Boerwinkle, Caroline S. Fox, Josef Coresh, W. H. Linda Kao
Software Mentions: 56
Published: over 10 years ago
10.1186/s12864-021-07370-2
GCSscore: an R package for differential gene expression analysis in Affymetrix/Thermo-Fisher whole transcriptome microarraysCited by: 3
Author(s): Guy M. Harris, Shahroze Abbas, Michael F. Miles
Software Mentions: 17
Published: over 3 years ago
10.1186/1471-2105-11-194
Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip dataCited by: 32
Author(s): Benedikt Zacher, Pei Fen Kuan, Achim Tresch
Software Mentions: 12
Published: about 14 years ago
10.1002/1878-0261.12595
Aberrant expression of RSK1 characterizes high‐grade gliomas with immune infiltrationCited by: 14
Author(s): Glaucia Noeli Maroso Hajj, Fernanda F. da Silva, Bárbara de Bellis, Fernanda C. S. Lupinacci, Hermano Martins Bellato, Juvanier R. Cruz, Claudionor Nogueira Costa Segundo, Igor Vilela Faquini, Leuridan Cavalcante Torres, Paulo Sanematsu, María Dirlei Begnami, Vilma R. Martins, Martín Roffé
Software Mentions: 9
Published: over 4 years ago
10.12688/f1000research.2-264.v1
illuminaio: An open source IDAT parsing tool for Illumina microarraysCited by: 59
Author(s): Mike L. Smith, Keith A. Baggerly, Henrik Bengtsson, Matthew E. Ritchie, Kasper D. Hansen
Software Mentions: 9
Published: over 10 years ago
10.1186/1471-2105-13-222
Wavelet-based detection of transcriptional activity on a novel Staphylococcus aureus tiling microarrayCited by: 3
Author(s): Víctor Segura, Alejandro Toledo‐Arana, Maite Uzqueda, Íñigo Lasa, Arrate Muñoz-Barrutia
Software Mentions: 8
Published: over 11 years ago
10.1371/journal.pone.0052299
Cell-Type Specific DNA Methylation Patterns Define Human Breast Cellular IdentityCited by: 22
Author(s): Petr Novák, Martha R. Stampfer, José L. Muñoz-Rodríguez, James C. Garbe, Mathias Ehrich, Bernard W. Futscher, Taylor J. Jensen
Software Mentions: 6
Published: over 11 years ago
10.1186/1471-2105-12-136
ArrayInitiative - a tool that simplifies creating custom Affymetrix CDFsCited by: 2
Author(s): Chris Overall, Denis Carr, Ehsan Tabari, Kevin J. Thompson, Juliane Weller
Software Mentions: 4
Published: about 13 years ago
10.1371/journal.pgen.1005101
The Fun30 Chromatin Remodeler Fft3 Controls Nuclear Organization and Chromatin Structure of Insulators and Subtelomeres in Fission YeastCited by: 52
Author(s): Babett Steglich, Annelie Strålfors, Olga Khorosjutina, Jenna Persson, Agata Smialowska, J.P. Javerzat, Karl Ekwall
Software Mentions: 3
Published: about 9 years ago
10.3390/genes8100243
Genetic Association between Amyotrophic Lateral Sclerosis and CancerCited by: 20
Author(s): Y-h. Taguchi, Hsiuying Wang
Software Mentions: 2
Published: over 6 years ago
10.1186/1471-2105-10-156
Differential splicing using whole-transcript microarraysCited by: 17
Author(s): Mark D. Robinson, Terence P. Speed
Software Mentions: 2
Published: almost 15 years ago
10.1186/s12864-017-4266-5
Framework for reanalysis of publicly available Affymetrix® GeneChip® data sets based on functional regions of interestCited by: 4
Author(s): Ernur Saka, Benjamin J. Harrison, Kirk West, Jeffrey C. Petruska, Eric C. Rouchka
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pbio.1001155
Transcriptome Analysis of the Arabidopsis Megaspore Mother Cell Uncovers the Importance of RNA Helicases for Plant Germline DevelopmentCited by: 120
Author(s): Anja Schmidt, Samuel E. Wuest, Kitty Vijverberg, Célia Baroux, Daniela Kleen, Ueli Grossniklaus
Software Mentions: 2
Published: over 12 years ago