Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/1471-2105-11-194

https://doi.org/10.1186/1471-2105-11-194

Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data

Cited by: 32
Author(s): Benedikt Zacher, Pei Fen Kuan, Achim Tresch
Published: over 14 years ago

Software Mentions 12

bioconductor: ACME
Algorithms for Calculating Microarray Enrichment (ACME)
Papers that mentioned: 63
bioconductor: affxparser
Affymetrix File Parsing SDK
Papers that mentioned: 13
bioconductor: affy
Methods for Affymetrix Oligonucleotide Arrays
Papers that mentioned: 989
bioconductor: BAC
Papers that mentioned: 14
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: oligo
Preprocessing tools for oligonucleotide arrays
Papers that mentioned: 204
bioconductor: Ringo
R Investigation of ChIP-chip Oligoarrays
Papers that mentioned: 36
bioconductor: vsn
Variance stabilization and calibration for microarray data
Papers that mentioned: 91
cran: MASS
Support Functions and Datasets for Venables and Ripley's MASS
Papers that mentioned: 2,353
cran: MAT
Multidimensional Adaptive Testing
Papers that mentioned: 216
cran: pspline
Penalized Smoothing Splines
Papers that mentioned: 9
pypi: oligo
UNOFFICIAL Python client for i-DE
Papers that mentioned: 204