Ecosyste.ms: Papers

10.1186/1471-2105-11-194

Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data
Cited by: 32
Author(s): Benedikt Zacher, Pei Fen Kuan, Achim Tresch
Software Mentions: 12
Published: over 14 years ago

10.1098/rsfs.2020.0007

Rapid, accurate, precise and reproducible ligand–protein binding free energy prediction
Cited by: 71
Author(s): Shunzhou Wan, Agastya P. Bhati, Stefan J. Zasada, Peter V. Coveney
Software Mentions: 5
Published: about 4 years ago

10.1098/rsfs.2019.0128

Hit-to-lead and lead optimization binding free energy calculations for G protein-coupled receptors
Cited by: 9
Author(s): Shunzhou Wan, Andrew Potterton, Fouad S. Husseini, David W. Wright, Alexander Heifetz, Maciej Malawski, Andrea Townsend‐Nicholson, Peter V. Coveney
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0242063

Inventive nesting behaviour in the keyhole wasp Pachodynerus nasidens Latreille (Hymenoptera: Vespidae) in Australia, and the risk to aviation safety
Cited by: 3
Author(s): Alan House, Jackson G. Ring, Phillip P. Shaw
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pgen.1001152

H3K27me3 Profiling of the Endosperm Implies Exclusion of Polycomb Group Protein Targeting by DNA Methylation
Cited by: 170
Author(s): Isabelle Weinhofer, Elisabeth Hehenberger, Pawel Roszak, Lars Hennig, Claudia Köhler
Software Mentions: 2
Published: about 14 years ago

10.1098/rsfs.2019.0133

Large-scale binding affinity calculations on commodity compute clouds
Cited by: 3
Author(s): Stefan J. Zasada, David W. Wright, Peter V. Coveney
Software Mentions: 2
Published: about 4 years ago

10.1186/1471-2105-10-352

Bayesian modeling of ChIP-chip data using latent variables
Cited by: 2
Author(s): Mingqi Wu, Faming Liang, Tian Yan
Software Mentions: 2
Published: about 15 years ago

10.1016/j.ijppaw.2019.05.012

Differentiation of Trichuris species using a morphometric approach
Cited by: 9
Author(s): Ángela María García‐Sánchez, Julia Rivero, Rocío Callejón, Antonio Zurita, Marta Reguera-Gómez, M. Adela Valero, Cristina Cutillas
Software Mentions: 1
Published: over 5 years ago

10.3390/ani11092495

DNA Multi-Marker Genotyping and CIAS Morphometric Phenotyping of Fasciola gigantica-Sized Flukes from Ecuador, with an Analysis of the Radix Absence in the New World and the Evolutionary Lymnaeid Snail Vector Filter
Cited by: 10
Author(s): M. D. Bargues, M. Adela Valero, Gabriel Trueba, Marco Fornasini, Ángel Fabián Villavicencio Abril, Rocío Guamán, Alejandra De Elías-Escribano, Ignácio Perez-Crespo, Patricio Artigas, Santiago Mas‐Coma
Software Mentions: 1
Published: over 3 years ago

10.1186/s12859-018-2506-6

High-throughput binding affinity calculations at extreme scales
Cited by: 13
Author(s): Jumana Dakka, Matteo Turilli, David W. Wright, Stefan J. Zasada, Vivek Balasubramanian, Shunzhou Wan, Peter V. Coveney, Shantenu Jha
Software Mentions: 1
Published: about 6 years ago

10.1186/s12888-015-0682-8

Protocol for a randomized controlled dismantling study of a brief telephonic psychological intervention applied to non-professional caregivers with symptoms of depression
Cited by: 6
Author(s): Fernando Vázquez, Ángela Torres, Olga Dı́az, Patricia Otero, Vanessa Blanco, Elisabet Hermida
Software Mentions: 1
Published: about 9 years ago

10.1186/s12917-020-02661-4

Trichuris trichiura isolated from Macaca sylvanus: morphological, biometrical, and molecular study
Cited by: 12
Author(s): Julia Rivero, Ángela María García‐Sánchez, Antonio Zurita, Cristina Cutillas, Rocío Callejón
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-66237-w

Study of Conversion of Bio-oil Model Compounds in Supercritical Water Using Density Functional Theory
Cited by: 5
Author(s): Kushagra Agrawal, Nanda Kishore
Software Mentions: 1
Published: over 4 years ago

10.1002/adts.201900194

Application of the ESMACS Binding Free Energy Protocol to a Multi‐Binding Site Lactate Dehydogenase A Ligand Dataset
Cited by: 10
Author(s): David W. Wright, Fouad S. Husseini, Shunzhou Wan, Christophe Meyer, Herman van Vlijmen, Gary Tresadern, Peter V. Coveney
Software Mentions: 1
Published: about 5 years ago