cran: MASS | Projects | Ecosyste.ms: Papers

10.1186/1471-2156-15-81

Copy number polymorphisms near SLC2A9 are associated with serum uric acid concentrations
Cited by: 16
Author(s): Robert B. Scharpf, Lynn Mireles, Qiong Yang, Anna Köttgen, Ingo Ruczinski, Katalin Suszták, Eitan Halper-Stromberg, Adrienne Tin, Stephen Cristiano, Aravinda Chakravarti, Eric Boerwinkle, Caroline S. Fox, Josef Coresh, W. H. Linda Kao
Software Mentions: 56
Published: almost 11 years ago

10.15252/msb.20209539

Predictive features of gene expression variation reveal mechanistic link with differential expression
Cited by: 36
Author(s): Olga M. Sigalova, Amirreza Shaeiri, Mattia Forneris, Eileen E. M. Furlong, Judith B. Zaugg
Software Mentions: 30
Published: over 4 years ago

10.1371/journal.pcbi.1005752

mixOmics: An R package for ‘omics feature selection and multiple data integration
Cited by: 1,902
Author(s): Florian Rohart, Benoît Gautier, Amrit Singh, Kim‐Anh Lê Cao
Software Mentions: 29
Published: about 7 years ago

10.1186/s12864-016-3387-6

HiC-bench: comprehensive and reproducible Hi-C data analysis designed for parameter exploration and benchmarking
Cited by: 64
Author(s): Charalampos Lazaris, Stephen M. Kelly, Panagiotis Ntziachristos, Iannis Aifantis, Aristotelis Tsirigos
Software Mentions: 28
Published: almost 8 years ago

10.1371/journal.pcbi.1006242

Phylogeny-corrected identification of microbial gene families relevant to human gut colonization
Cited by: 29
Author(s): Patrick H. Bradley, Stephen Nayfach, Katherine S. Pollard
Software Mentions: 27
Published: over 6 years ago

10.3389/fmicb.2018.01474

Distinct Oceanic Microbiomes From Viruses to Protists Located Near the Antarctic Circumpolar Current
Cited by: 24
Author(s): Flavia Flaviani, Declan C. Schroeder, Karen Lebret, Cecilia Balestreri, Andrea Highfield, Joanna L. Schroeder, Sally Thorpe, Karen Moore, Konrad Pasckiewicz, Maya C. Pfaff, Edward P. Rybicki
Software Mentions: 27
Published: over 6 years ago

10.1111/joa.13366

Selection on vocal output affects laryngeal morphology in rats
Cited by: 6
Author(s): Raffaela Lesch, Thomas Schwaha, Andrea Orozco, Margaret Shilling, Susan A. Brunelli, Myron A. Hofer, Daniel L. Bowling, Betty Zimmerberg, W. Tecumseh Fitch
Software Mentions: 25
Published: almost 4 years ago

10.3390/ani9070417

Talking to Dogs: Companion Animal-Directed Speech in a Stress Test
Cited by: 9
Author(s): Raffaela Lesch, Kurt Kotrschal, Iris Schöberl, Andrea Beetz, Judith Solomon, W. Tecumseh Fitch
Software Mentions: 25
Published: over 5 years ago

10.1371/journal.pntd.0009252

Optimising predictive modelling of Ross River virus using meteorological variables
Cited by: 4
Author(s): Iain S. Koolhof, Simon M. Firestone, SS Bettiol, Michael A. Charleston, Katherine B Gibney, Peter J. Neville, Andrew Jardine, Scott Carver
Software Mentions: 23
Published: almost 4 years ago

10.7554/eLife.43966

Unified single-cell analysis of testis gene regulation and pathology in five mouse strains
Cited by: 91
Author(s): Min Jung, Daniel Wells, Jannette Rusch, Suhaira Ahmad, Jonathan Marchini, Simon Myers, Donald F. Conrad
Software Mentions: 22
Published: over 5 years ago

10.3389/fgene.2021.667936

Bioinformatic Analysis of Temporal and Spatial Proteome Alternations During Infections
Cited by: 9
Author(s): Matineh Rahmatbakhsh, Alla Gagarinova, Mohan Babu
Software Mentions: 21
Published: over 3 years ago

10.1371/journal.pone.0146021

Dose-Response Analysis Using R
Cited by: 2,013
Author(s): Christian Ritz, Florent Baty, J. C. Streibig, Daniel Gerhard
Software Mentions: 20
Published: almost 9 years ago

10.1186/1756-0500-3-277

EMA - A R package for Easy Microarray data analysis
Cited by: 45
Author(s): Nicolas Servant, Eléonore Gravier, Pierre Gestraud, Cécile Laurent, Caroline Paccard, Anne Biton, Isabel Martínez Brito, Jonas Mandel, Bernard Asselain, Emmanuel Barillot, Philippe Hupé
Software Mentions: 20
Published: about 14 years ago

10.1155/2020/5418364

A Nomogram Based on Radiomics with Mammography Texture Analysis for the Prognostic Prediction in Patients with Triple-Negative Breast Cancer
Cited by: 9
Author(s): Xian Jiang, Xiuhe Zou, Jing Sun, Aiping Zheng, Chao Su
Software Mentions: 20
Published: over 4 years ago

10.1186/s13104-019-4179-2

TCC-GUI: a Shiny-based application for differential expression analysis of RNA-Seq count data
Cited by: 75
Author(s): Wei Su, Jianqiang Sun, Kentaro Shimizu, Koji Kadota
Software Mentions: 20
Published: almost 6 years ago

10.1038/s41598-020-73413-5

The macroevolutionary landscape of short-necked plesiosaurians
Cited by: 13
Author(s): Valentin Fischer, Jamie A. MacLaren, Laura C. Soul, Rebecca Bennion, Patrick S. Druckenmiller, Roger Benson
Software Mentions: 19
Published: about 4 years ago

10.1093/molbev/msaa311

A Two-Locus System with Strong Epistasis Underlies Rapid Parasite-Mediated Evolution of Host Resistance
Cited by: 15
Author(s): Camille Ameline, Yann Bourgeois, Felix Vögtli, Eevi Savola, Jason P. Andras, Jan Engelstädter, Dieter Ebert
Software Mentions: 19
Published: about 4 years ago

10.1098/rsos.202050

Experiments confirm a dispersive phenotype associated with a natural gene drive system
Cited by: 7
Author(s): Jan‐Niklas Runge, Anna K. Lindholm
Software Mentions: 19
Published: over 3 years ago

10.1186/s12889-021-11267-w

Influence of chronic hepatitis C infection on the monocyte-to-platelet ratio: data analysis from the National Health and Nutrition Examination Survey (2009–2016)
Cited by: 1
Author(s): Aidan M. Nikiforuk, Mohammad Ehsanul Karim, David M. Patrick, Agatha Jassem
Software Mentions: 18
Published: over 3 years ago

10.1038/s41598-020-58274-2

Pollen defenses negatively impact foraging and fitness in a generalist bee (Bombus impatiens: Apidae)
Cited by: 34
Author(s): Kristen Brochu, Maria T. van Dyke, Nelson J. Milano, Jessica D. Petersen, Scott H. McArt, Brian A. Nault, André Kessler, Bryan N. Danforth
Software Mentions: 17
Published: almost 5 years ago

10.1371/journal.pone.0136452

Estimating Limit Reference Points for Western Pacific Leatherback Turtles (Dermochelys coriacea) in the U.S. West Coast EEZ
Cited by: 14
Author(s): K. Alexandra Curtis, Jeffrey E. Moore, Scott R. Benson
Software Mentions: 16
Published: over 9 years ago

10.1186/1472-6947-13-126

Evaluation of prediction models for the staging of prostate cancer
Cited by: 19
Author(s): Susie Boyce, Yue Fan, R. William G. Watson, Brendan Murphy
Software Mentions: 16
Published: about 11 years ago

10.1371/journal.pntd.0007969

Severity Index for Suspected Arbovirus (SISA): Machine learning for accurate prediction of hospitalization in subjects suspected of arboviral infection
Cited by: 10
Author(s): Rachel Sippy, Daniel F. Farrell, Daniel A. Lichtenstein, Ryan Nightingale, Megan Harris, Joseph Toth, Paris Hantztidiamantis, Nicholas Usher, Cinthya Cueva Aponte, Julio Barzallo Aguilar, Anthony Puthumana, Christina D. Lupone, Timothy P. Endy, Sadie J. Ryan, Anna M. Stewart-Ibarra
Software Mentions: 16
Published: almost 5 years ago

10.1186/1471-2105-9-439

CMA – a comprehensive Bioconductor package for supervised classification with high dimensional data
Cited by: 90
Author(s): Martin Slawski, Martin Däumer, Anne‐Laure Boulesteix
Software Mentions: 16
Published: about 16 years ago

10.1002/ece3.6959

In the shadows of snow leopards and the Himalayas: density and habitat selection of blue sheep in Manang, Nepal
Cited by: 11
Author(s): Marc Filla, Rinzin Phunjok Lama, Tashi Rapte Ghale, Johannes Signer, Tim Filla, Raja Ram Aryal, Marco Heurich, Matthias Waltert, Niko Balkenhol, Igor Khorozyan
Software Mentions: 16
Published: about 4 years ago

10.1371/journal.pone.0214640

Correlates of social role and conflict severity in wild vervet monkey agonistic screams
Cited by: 10
Author(s): Stéphanie Mercier, Éloïse C. Déaux, Erica van de Waal, Axelle Bono, Klaus Zuberbühler
Software Mentions: 16
Published: over 5 years ago

10.1371/journal.pntd.0009232

Intestinal protozoan infections shape fecal bacterial microbiota in children from Guinea-Bissau
Cited by: 8
Author(s): Sebastian von Huth, Louise B. Thingholm, Poul Erik Kofoed, Corinna Bang, Malte Rühlemann, André Franke, Uffe Holmskov
Software Mentions: 15
Published: almost 4 years ago

10.1371/journal.pone.0018850

Multiplexed Immunoassay Panel Identifies Novel CSF Biomarkers for Alzheimer's Disease Diagnosis and Prognosis
Cited by: 199
Author(s): Rebecca Craig‐Schapiro, Max Kühn, Chengjie Xiong, Eve H. Pickering, Jingxia Liu, Thomas P. Misko, Richard J. Perrin, Kelly R. Bales, Holly Soares, Anne M. Fagan, David M. Holtzman
Software Mentions: 15
Published: over 13 years ago

10.3390/microorganisms9051050

Effect of Ionizing Radiation on the Bacterial and Fungal Endophytes of the Halophytic Plant Kalidium schrenkianum
Cited by: 5
Author(s): Jing Zhu, Xiang Sun, Zhidong Zhang, Qi-Yong Tang, Minghong Gu, Lijuan Zhang, Min Hou, Amir Sharon, Hongli Yuan
Software Mentions: 15
Published: over 3 years ago

10.1038/s41598-020-72571-w

Persistent fire foci in all biomes undermine the Paris Agreement in Brazil
Cited by: 51
Author(s): Carlos Antônio da Silva, Paulo Eduardo Teodoro, Rafael Coll Delgado, Larissa Pereira Ribeiro Teodoro, Mendelson Lima, Ariane de Andréa Pantaleão, Fábio Henrique Rojo Baio, Gileno Brito de Azevedo, Glauce Táıs de Oliveira Sousa Azevedo, Guilherme Fernando Capristo-Silva, Damien Arvor, Cassiele Uliana Facco
Software Mentions: 15
Published: about 4 years ago

10.3389/fneur.2019.01366

Prediction of Early TBI Mortality Using a Machine Learning Approach in a LMIC Population
Cited by: 39
Author(s): Robson Luís Oliveira de Amorim, Louise Makarem Oliveira, Luis Marcelo Malbouisson, Márcia Mitie Nagumo, Marcela Simoes, Leandro Miranda, Edson Bor‐Seng‐Shu, André Beer‐Furlan, Almir Ferreira de Andrade, Andrés M. Rubiano, Manoel Jacobsen Teixeira, Angelos G. Kolias, Wellingson Silva Paiva
Software Mentions: 15
Published: almost 5 years ago

10.7554/eLife.53392

ZCWPW1 is recruited to recombination hotspots by PRDM9 and is essential for meiotic double strand break repair
Cited by: 23
Author(s): Daniel Wells, Emmanuelle Bitoun, Daniela Moralli, Gang Zhang, Anjali Gupta Hinch, Julia Jankowska, Peter Donnelly, Catherine Green, Simon Myers
Software Mentions: 14
Published: over 4 years ago

10.1038/s41598-020-80365-3

Drivers of spatio-temporal variation in mosquito submissions to the citizen science project ‘Mückenatlas’
Cited by: 13
Author(s): Nadja Pernat, Helge Kampen, Florian Ruland, Jonathan M. Jeschke, Doreen Werner
Software Mentions: 14
Published: almost 4 years ago

10.1371/journal.ppat.1009637

A field test of the dilution effect hypothesis in four avian multi-host pathogens
Cited by: 11
Author(s): Martina Ferraguti, Josué Martínez‐de la Puente, Miguel Ángel Jiménez‐Clavero, Francisco Rubio Llorente, David Roiz, Santiago Ruíz, Ramón C. Soriguer, Jordi Figuerola
Software Mentions: 14
Published: over 3 years ago

10.1186/s12859-021-03970-7

stochprofML: stochastic profiling using maximum likelihood estimation in R
Cited by: 3
Author(s): Lisa Amrhein, Christiane Fuchs
Software Mentions: 14
Published: almost 4 years ago

10.3390/cells10030620

Measuring Pre- and Post-Copulatory Sexual Selection and Their Interaction in Socially Monogamous Species with Extra-Pair Paternity
Cited by: 6
Author(s): Emily R. A. Cramer
Software Mentions: 14
Published: almost 4 years ago

10.1186/s13059-019-1851-8

Differential co-expression-based detection of conditional relationships in transcriptional data: comparative analysis and application to breast cancer
Cited by: 44
Author(s): Dharmesh D. Bhuva, Joseph Cursons, Gordon K. Smyth, Melissa J. Davis
Software Mentions: 14
Published: about 5 years ago

10.1186/s12889-021-11060-9

Identifying US County-level characteristics associated with high COVID-19 burden
Cited by: 9
Author(s): Daniel Li, Sheila M. Gaynor, Corbin Quick, Jarvis T. Chen, Briana Stephenson, Brent A. Coull, Xihong Lin
Software Mentions: 14
Published: over 3 years ago

10.3389/fpls.2020.01206

Similar Arbuscular Mycorrhizal Fungal Communities in 31 Durum Wheat Cultivars (Triticum turgidum L. var. durum) Under Field Conditions in Eastern Canada
Cited by: 16
Author(s): Franck Stefani, Sarah Dupont, Mario Laterrière, Ron Knox, Yuefeng Ruan, Chantal Hamel, Mohamed Hijri
Software Mentions: 13
Published: over 4 years ago

10.1038/s41598-021-90901-4

Characteristics of preoperative steroid profiles and glucose metabolism in patients with primary aldosteronism developing adrenal insufficiency after adrenalectomy
Cited by: 3
Author(s): Xiao Wang, Daniel A. Heinrich, Sonja Kunz, Nina Heger, Lisa Sturm, Olaf Uhl, Felix Beuschlein, Martín Reincke, Martin Bidlingmaier
Software Mentions: 13
Published: over 3 years ago

10.1371/journal.pone.0242502

Timeliness of immunisation with the pentavalent vaccine at different levels of the health care system in the Lao People’s Democratic Republic: A cross-sectional study
Cited by: 3
Author(s): Lisa Hefele, Sengdavanh Syphan, Dalouny Xayavong, Anousin Homsana, Daria Kleine, Phetsavanh Chanthavilay, Phonethipsavanh Nouanthong, Kinnaly Xaydalasouk, Outavong Phathammavong, Somxay Billamay, Anonh Xeuatvongsa, Daniel Reinharz, Antony P. Black, Claude P. Muller
Software Mentions: 13
Published: about 4 years ago

10.3389/fbioe.2021.614324

One-Time Optimization of Advanced T Cell Culture Media Using a Machine Learning Pipeline
Cited by: 9
Author(s): Paul Grzesik, Sebastian C. Warth
Software Mentions: 13
Published: over 3 years ago

10.3390/microorganisms9050945

Diversity and Geographical Structure of Xanthomonas citri pv. citri on Citrus in the South West Indian Ocean Region
Cited by: 4
Author(s): Olivier Pruvost, Damien Richard, Karine Boyer, Stéphanie Javegny, Claudine Boyer, Frédéric Chiroleu, Pierre Grygiel, Evelyne Parvedy, Isabelle Robène, Véronique Maillot-Lebon, Abdou Azali Hamza, Kanta Kumar Lobin, Marc Naiken, Christian Vernière
Software Mentions: 13
Published: over 3 years ago

10.3389/fvets.2019.00406

An Epidemiological and Economic Simulation Model to Evaluate Strategies for the Control of Bovine Virus Diarrhea in Germany
Cited by: 17
Author(s): Jörn Gethmann, Carolina Probst, Jason Bassett, Pascal Blunk, Philipp Hövel, Franz Josef Conraths
Software Mentions: 13
Published: about 5 years ago

10.1186/1471-2105-10-363

A novel R-package graphic user interface for the analysis of metabonomic profiles
Cited by: 51
Author(s): José Luis Izquierdo-García, Ignacio Rodríguez, Angelos Kyriazis, Palmira Villa, Pilar Barreiro Elorza, Manuel Desco, Jesús Ruíz-Cabello
Software Mentions: 13
Published: about 15 years ago

10.1186/1471-2164-14-46

Systems infection biology: a compartmentalized immune network of pig spleen challenged with Haemophilus parasuis
Cited by: 9
Author(s): Ming Zhao, Xiangdong Liu, Xinyun Li, Hongbo Chen, Hui Jin, Rui Zhou, Mengjin Zhu, Shuhong Zhao
Software Mentions: 13
Published: almost 12 years ago

10.3390/curroncol28040269

Evaluating the Impact of the COVID-19 Pandemic on New Cancer Diagnoses and Oncology Care in Manitoba
Cited by: 14
Author(s): Kathleen Decker, Pascal Lambert, Allison Feely, Oliver Bucher, Julian O. Kim, Pamela Hebbard, Maclean Thiessen, Tunji Fatoye, Marshall Pitz, Rashmi Koul, Piotr Czaykowski
Software Mentions: 13
Published: over 3 years ago

10.1007/s12035-018-1112-y

Differentiation-Induced Remodelling of Store-Operated Calcium Entry Is Independent of Neuronal or Glial Phenotype but Modulated by Cellular Context
Cited by: 5
Author(s): Claire Whitworth, Christopher P.F. Redfern, Timothy R. Cheek
Software Mentions: 13
Published: over 6 years ago

10.3390/ijms22031075

A Novel Epigenetic Machine Learning Model to Define Risk of Progression for Hepatocellular Carcinoma Patients
Cited by: 7
Author(s): Luca Bedon, Michele Dal Bo, Monica Mossenta, Davide Busato, Giuseppe Toffoli, Maurizio Polano
Software Mentions: 13
Published: almost 4 years ago

10.1371/journal.pone.0199277

Predictive performance of six mortality risk scores and the development of a novel model in a prospective cohort of patients undergoing valve surgery secondary to rheumatic fever
Cited by: 13
Author(s): Omar Asdrúbal Vilca Mejía, Manuel J. Antunes, Maxim Goncharov, Luís Alberto Oliveira Dallan, Elinthon Tavares Veronese, Gisele Aparecida Lapenna, Luiz Augusto Ferreira Lisboa, Carlos Manuel de Almeida Brandão, Jorge P. Zubelli, Flávio Tarasoutchi, Pablo Maria Alberto Pomerantzeff, Fábio Biscegli Jatene
Software Mentions: 13
Published: over 6 years ago

10.3389/fmicb.2021.713523

Dispersal Limitation Plays Stronger Role in the Community Assembly of Fungi Relative to Bacteria in Rhizosphere Across the Arable Area of Medicinal Plant
Cited by: 15
Author(s): Guozhuang Zhang, Guangfei Wei, Fang Wei, Zhongjian Chen, Min He, Shuo Jiao, Yong Wang, Lixin Dong, Shilin Chen
Software Mentions: 13
Published: over 3 years ago

10.3389/fpls.2021.628439

The History of Lentil (Lens culinaris subsp. culinaris) Domestication and Spread as Revealed by Genotyping-by-Sequencing of Wild and Landrace Accessions
Cited by: 19
Author(s): Marta Liber, Isabel Margarida Duarte, Ana-Teresa Maia, Hugo R. Oliveira
Software Mentions: 13
Published: over 3 years ago

10.3390/ijms21134674

The Inflammasome Adaptor Protein ASC in Mild Cognitive Impairment and Alzheimer’s Disease
Cited by: 37
Author(s): Xavier O. Scott, Marisa E. Stephens, Marie C. Desir, W. Dalton Dietrich, Robert W. Keane, Juan Pablo de Rivero Vaccari
Software Mentions: 13
Published: over 4 years ago

10.1371/journal.pone.0207491

Feature selection and prediction of treatment failure in tuberculosis
Cited by: 30
Author(s): Christopher Martin Sauer, David Sasson, Kenneth E. Paik, Ned McCague, Leo Anthony Celi, Iván Sánchez Fernández, Ben Illigens
Software Mentions: 12
Published: about 6 years ago

10.3389/fimmu.2021.647832

Large-Scale Gene Expression Signatures Reveal a Microbicidal Pattern of Activation in Mycobacterium leprae-Infected Monocyte-Derived Macrophages With Low Multiplicity of Infection
Cited by: 9
Author(s): Thyago Leal-Calvo, Bruna Letícia Martins, Daniele Ferreira de Faria Bertoluci, Patrícia Sammarco Rosa, Rodrigo Mendes de Camargo, G. Germano, Vânia Niéto Brito de Souza, Ana Carla Pereira Latini, Milton Ozório Moraes
Software Mentions: 12
Published: over 3 years ago

10.1371/journal.pone.0191956

Carotenoid coloration and health status of urban Eurasian kestrels (Falco tinnunculus)
Cited by: 24
Author(s): Petra Sumasgutner, Marius Adrion, Anita Gamauf
Software Mentions: 12
Published: almost 7 years ago

10.3390/microorganisms9071526

Exploring the Individual Bacterial Microbiota of Questing Ixodes ricinus Nymphs
Cited by: 2
Author(s): Aurélien Alafaci, Alexandre Crépin, Sabine Beaubert, Jean‐Marc Berjeaud, Vincent Delafont, Julien Verdon
Software Mentions: 12
Published: over 3 years ago

10.3389/fpsyg.2021.619715

Two Ends of the Leash: Relations Between Personality of Shelter Volunteers and On-leash Walking Behavior With Shelter Dogs
Cited by: 2
Author(s): Hao-Yu Shih, Mandy Paterson, Fillipe Georgiou, Leander K. Mitchell, Nancy A. Pachana, Clive J. C. Phillips
Software Mentions: 12
Published: over 3 years ago

10.3389/fvets.2021.699332

Volunteers' Demographics That Affect the Human-Dog Interaction During Walks in a Shelter
Cited by: 2
Author(s): Hao-Yu Shih, Mandy Paterson, Nancy A. Pachana, Clive J. C. Phillips
Software Mentions: 12
Published: over 3 years ago

10.1007/s00216-020-03093-7

Repeated double cross-validation applied to the PCA-LDA classification of SERS spectra: a case study with serum samples from hepatocellular carcinoma patients
Cited by: 23
Author(s): Elisa Gurian, Alessia Di Silvestre, Elisa Mitri, Devis Pascut, Claudio Tiribelli, Mauro Giuffrè, Lory Saveria Crocè, Valter Sergo, Alois Bonifacio
Software Mentions: 12
Published: about 4 years ago

10.1186/s40168-020-0793-4

Separating the signal from the noise in metagenomic cell-free DNA sequencing
Cited by: 26
Author(s): Philip Burnham, Nardhy Gómez-López, Michael Heyang, Alexandre Pellan Cheng, Joan Sesing Lenz, Darshana Dadhania, John Richard Lee, Manikkam Suthanthiran, Roberto Romero, Iwijn De Vlaminck
Software Mentions: 12
Published: almost 5 years ago

10.1371/journal.pntd.0007061

Population genetic structure and geographical variation in Neotricula aperta (Gastropoda: Pomatiopsidae), the snail intermediate host of Schistosoma mekongi (Digenea: Schistosomatidae)
Cited by: 2
Author(s): Stephen W. Attwood, Liang Liu, Guan-Nan Huo
Software Mentions: 12
Published: almost 6 years ago

10.1186/s12859-020-03803-z

NBZIMM: negative binomial and zero-inflated mixed models, with application to microbiome/metagenomics data analysis
Cited by: 38
Author(s): Xinyan Zhang, Nengjun Yi
Software Mentions: 12
Published: about 4 years ago

10.1002/ece3.5295

<i>Acacia dealbata</i> invasion in Chile: Surprises from climatic niche and species distribution models
Cited by: 12
Author(s): Bárbara Langdon, Aníbal Pauchard, Ramiro O. Bustamante
Software Mentions: 12
Published: over 5 years ago

10.3390/insects10090271

Comparison of Twelve Ant Species and Their Susceptibility to Fungal Infection
Cited by: 13
Author(s): Nick Bos, Viljami Kankaanpää-Kukkonen, Dalial Freitak, Dimitri Stucki, Liselotte Sundström
Software Mentions: 12
Published: over 5 years ago

10.1186/1471-2105-11-194

Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data
Cited by: 32
Author(s): Benedikt Zacher, Pei Fen Kuan, Achim Tresch
Software Mentions: 12
Published: over 14 years ago

10.3390/plants10050879

Multivariate Analysis of Morpho-Physiological Traits Reveals Differential Drought Tolerance Potential of Bread Wheat Genotypes at the Seedling Stage
Cited by: 26
Author(s): Mohammed Mohi-Ud-Din, Md. Alamgir Hossain, Md. Motiar Rohman, Md. Nesar Uddin, Md. Sabibul Haque, Jalal Uddin Ahmed, Akbar Hossain, Mohamed M. Hassan, Mohammad Golam Mostofa
Software Mentions: 12
Published: over 3 years ago

10.1534/g3.120.401527

rdmc: An Open Source R Package Implementing Convergent Adaptation Models of Lee and Coop (2017)
Cited by: 2
Author(s): Silas Tittes
Software Mentions: 12
Published: over 4 years ago

10.3390/ani11010026

Do Canine Behavioural Assessments and Characteristics Predict the Human-Dog Interaction When Walking on a Leash in a Shelter Setting?
Cited by: 4
Author(s): Hao-Yu Shih, Mandy Paterson, Fillipe Georgiou, Clive J. C. Phillips
Software Mentions: 12
Published: almost 4 years ago

10.1002/ece3.7992

Using Delaunay triangulation to sample whole‐specimen color from digital images
Cited by: 5
Author(s): Jennifer J Valvo, J. David Aponte, Mitch J Daniel, Kenna Dwinell, Helen Rodd, David Houle, Kimberly A. Hughes
Software Mentions: 12
Published: over 3 years ago

10.1002/ece3.7972

Elevated temperature increases reproductive investment in less preferred mates in the invasive European corn borer moth
Cited by: 4
Author(s): Arielle N. Enos, Genevieve M. Kozak
Software Mentions: 12
Published: over 3 years ago

10.3390/ani10101894

Who Is Pulling the Leash? Effects of Human Gender and Dog Sex on Human–Dog Dyads When Walking On-Leash
Cited by: 10
Author(s): Hao-Yu Shih, Mandy Paterson, Fillipe Georgiou, Nancy A. Pachana, Clive J. C. Phillips
Software Mentions: 12
Published: about 4 years ago

10.3389/fpsyg.2018.02251

Disabled or Cyborg? How Bionics Affect Stereotypes Toward People With Physical Disabilities
Cited by: 28
Author(s): Bertolt Meyer, Frank Asbrock
Software Mentions: 11
Published: about 6 years ago

10.1371/journal.pone.0207126

Prognostic function to estimate the probability of meaningful clinical improvement after surgery - Results of a prospective multicenter observational cohort study on patients with lumbar spinal stenosis
Cited by: 20
Author(s): Ulrike Held, Jakob M Burgstaller, Maria M. Wertli, Giuseppe Pichierri, Sebastian Winklhofer, Florian Brunner, François Porchet, Mazda Farshad, Johann Steurer
Software Mentions: 11
Published: about 6 years ago

10.3390/ijerph17197153

Association between Maternal Postpartum Depression, Stress, Optimism, and Breastfeeding Pattern in the First Six Months
Cited by: 33
Author(s): Andrea Gila-Díaz, Gloria Herranz Carrillo, Ángel L. López de Pablo, Silvia M. Arribas, David Ramiro-Cortijo
Software Mentions: 11
Published: about 4 years ago

10.1186/s41235-018-0133-4

App icon similarity and its impact on visual search efficiency on mobile touch devices
Cited by: 5
Author(s): Anna Trapp, Carolin Wienrich
Software Mentions: 11
Published: about 6 years ago

10.3390/foods10010143

Intramuscular Fat Prediction Using Color and Image Analysis of Bísaro Pork Breed
Cited by: 7
Author(s): Alfredo Teixeira, Severiano Silva, Marianne Hasse, José Almeida, Luís G. Dias
Software Mentions: 11
Published: almost 4 years ago

10.1007/s00431-021-04147-3

Sleep behavior of infants with infantile hemangioma treated with propranolol—a cohort study
Cited by: 6
Author(s): Martin Theiler, Nicole Knöpfel, Susanne Heydt, Agnes Schwieger‐Briel, Isabelle Luchsinger, Alexandra Smith, Kristin Kernland‐Lang, Regula Waelchli, Kathrin Neuhaus, Malcolm Kohler, Ralph Gnannt, Sarah F. Schoch, Lisa Weibel, Salomé Kurth
Software Mentions: 11
Published: over 3 years ago

10.3389/fvets.2017.00002

Using Machine Learning to Predict Swine Movements within a Regional Program to Improve Control of Infectious Diseases in the US
Cited by: 28
Author(s): Pablo Valdes–Donoso, Kimberly VanderWaal, Lovell S. Jarvis, Spencer Wayne, Andres Pérez
Software Mentions: 11
Published: almost 8 years ago

10.1371/journal.pone.0220961

Bayesian hierarchical negative binomial models for multivariable analyses with applications to human microbiome count data
Cited by: 4
Author(s): Amanda H. Pendegraft, Boyi Guo, Nengjun Yi
Software Mentions: 11
Published: over 5 years ago

10.1002/ece3.6904

Light might suppress both types of sound‐evoked antipredator flight in moths
Cited by: 2
Author(s): Theresa Hügel, Holger R. Goerlitz
Software Mentions: 11
Published: about 4 years ago

10.1371/journal.pone.0156825

Inundation and Fire Shape the Structure of Riparian Forests in the Pantanal, Brazil
Cited by: 32
Author(s): Wellinton de Sá Arruda, Jens Oldeland, Antônio Conceição Paranhos Filho, Arnildo Pott, Nicolay Leme da Cunha, Iria Hiromi Ishii, Geraldo Alves Damasceno
Software Mentions: 11
Published: over 8 years ago

10.1038/s41598-020-66107-5

Spatio-temporal trends in richness and persistence of bacterial communities in decline-phase water vole populations
Cited by: 5
Author(s): Petra Villette, Eve Afonso, Geoffroy Couval, Aurélien Levret, Maxime Galan, A.-C. Goydadin, Jean-François Cosson, Patrick Giraudoux
Software Mentions: 11
Published: over 4 years ago

10.1002/ece3.7881

Conversion of rainforest into oil palm and rubber plantations affects the functional composition of litter and soil Collembola
Cited by: 4
Author(s): Winda Ika Susanti, Tamara Bartels, Valentyna Krashevska, Rahayu Widyastuti, Louis Deharveng, Stefan Scheu, Anton M. Potapov
Software Mentions: 11
Published: over 3 years ago

10.3390/diagnostics11081517

Prediction Model for Tumor Budding Status Using the Radiomic Features of F-18 Fluorodeoxyglucose Positron Emission Tomography/Computed Tomography in Cervical Cancer
Cited by: 5
Author(s): Gun Oh Chong, Shin‐Hyung Park, Shin Young Jeong, Su Jeong Kim, Nora Jee-Young Park, Yoon Hee Lee, Sang‐Woo Lee, Dae Gy Hong, Ji Young Park, Hyung Soo Han
Software Mentions: 11
Published: over 3 years ago

10.3390/insects10060177

Sticky Trap Design Considerations for Entrapping Bed Bugs
Cited by: 1
Author(s): Benjamin A. Hottel, Roberto M. Pereira, Salvador A. Gezan, Philip G. koehler
Software Mentions: 11
Published: over 5 years ago

10.1038/s42003-020-01166-y

Spatial patterns of microbial communities across surface waters of the Great Barrier Reef
Cited by: 28
Author(s): Pedro R. Frade, Bettina Glasl, Samuel A. Matthews, Camille Mellin, Ester Á. Serrão, Kennedy Wolfe, Peter J. Mumby, Nicole S. Webster, David G. Bourne
Software Mentions: 11
Published: over 4 years ago

10.1186/cc13993

Relationship between acid–base status and inflammation in the critically ill
Cited by: 38
Author(s): Fernando Godinho Zampieri, John A. Kellum, Marcelo Park, Otávio T. Ranzani, Hermes Vieira Barbeiro, Heraldo Possolo de Souza, Luiz Monteiro da Cruz Neto, Fabiano Pinheiro da Silva
Software Mentions: 11
Published: almost 11 years ago

10.1371/journal.pone.0234503

Nest boxes buffer the effects of climate on breeding performance in an African urban raptor
Cited by: 17
Author(s): Petra Sumasgutner, Andrew R. Jenkins, Arjun Amar, Res Altwegg
Software Mentions: 11
Published: over 4 years ago

10.1186/1756-0500-3-10

A collection of bioconductor methods to visualize gene-list annotations
Cited by: 46
Author(s): Gang Feng, Pan Du, Nancy L. Krett, Michael A. Tessel, Steven T. Rosen, Warren A. Kibbe, Simon Lin
Software Mentions: 11
Published: almost 15 years ago

10.3897/BDJ.6.e20760

spind: an R Package to Account for Spatial Autocorrelation in the Analysis of Lattice Data
Cited by: 7
Author(s): Gudrun Carl, Sam Levin, Ingolf Kühn
Software Mentions: 11
Published: almost 7 years ago

10.3897/BDJ.8.e56876

Environmental DNA revealed the fish community of Hokkaido Island, Japan, after invasion by rainbow trout
Cited by: 5
Author(s): Akio Imamura, Kana Hayami, Masato Sakata, Toshifumi Minamoto
Software Mentions: 11
Published: about 4 years ago

10.3389/fimmu.2019.00827

Quantitative Prediction of the Landscape of T Cell Epitope Immunogenicity in Sequence Space
Cited by: 60
Author(s): Masato Ogishi, Hiroshi Yotsuyanagi
Software Mentions: 11
Published: over 5 years ago

10.1038/s41598-017-17728-w

Enclaves of genetic diversity resisted Inca impacts on population history
Cited by: 28
Author(s): Chiara Barbieri, José R. Sandoval, Jairo Valqui, Aviva Shimelman, Stefan Ziemendorff, Roland Schröder, Martin Geppert, Lutz Roewer, Russell D. Gray, Mark Stoneking, Ricardo Fujita, Paul Heggarty
Software Mentions: 11
Published: about 7 years ago

10.1038/s41598-018-20825-z

Mosquito community influences West Nile virus seroprevalence in wild birds: implications for the risk of spillover into human populations
Cited by: 30
Author(s): Josué Martínez‐de la Puente, Martina Ferraguti, Santiago Ruíz, David Roiz, Francisco Rubio Llorente, Elisa Pérez‐Ramírez, Miguel Ángel Jiménez‐Clavero, Ramón C. Soriguer, Jordi Figuerola
Software Mentions: 11
Published: almost 7 years ago

10.1167/jov.21.1.1

Flexible contextual modulation of naturalistic texture perception in peripheral vision
Cited by: 9
Author(s): Daniel Herrera-Esposito, Ruben Coen-Cagli, Leonel Gómez-Sena
Software Mentions: 11
Published: almost 4 years ago

10.1038/s41598-018-28356-3

Dosage compensation and DNA methylation landscape of the X chromosome in mouse liver
Cited by: 34
Author(s): Chris Duncan, Sara A. Grimm, Daniel L. Morgan, Pierre R. Bushel, Brian D. Bennett, John D. Roberts, Frederick L. Tyson, B. Alex Merrick, Paul A. Wade
Software Mentions: 11
Published: over 6 years ago

10.3389/fonc.2021.614052

MRI Radiomics Signature as a Potential Biomarker for Predicting KRAS Status in Locally Advanced Rectal Cancer Patients
Cited by: 9
Author(s): Zhiyuan Zhang, Lijun Shen, Yan Wang, Jiazhou Wang, Hui Zhang, Xuesen Fan, Juefeng Wan
Software Mentions: 11
Published: over 3 years ago

10.3389/fonc.2021.644956

A New Oxaliplatin Resistance-Related Gene Signature With Strong Predicting Ability in Colon Cancer Identified by Comprehensive Profiling
Cited by: 6
Author(s): Qiu Sheng Lin, Liang Luo, Hua Wang
Software Mentions: 10
Published: over 3 years ago

10.1371/journal.pone.0114749

FindFoci: A Focus Detection Algorithm with Automated Parameter Training That Closely Matches Human Assignments, Reduces Human Inconsistencies and Increases Speed of Analysis
Cited by: 88
Author(s): Alex Herbert, Antony Carr, Eva R. Hoffmann
Software Mentions: 10
Published: about 10 years ago

Projects: cran: MASS

Papers Mentioning MASS 2,353