Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0220961

https://doi.org/10.1371/journal.pone.0220961

Bayesian hierarchical negative binomial models for multivariable analyses with applications to human microbiome count data

Cited by: 4
Author(s): Amanda H. Pendegraft, Boyi Guo, Nengjun Yi
Published: over 5 years ago

Software Mentions 11

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: colorspace
A Toolbox for Manipulating and Assessing Colors and Palettes
Papers that mentioned: 31
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: gridExtra
Miscellaneous Functions for "Grid" Graphics
Papers that mentioned: 298
cran: MASS
Support Functions and Datasets for Venables and Ripley's MASS
Papers that mentioned: 2,353
cran: reshape
Flexibly Reshape Data
Papers that mentioned: 123
pypi: colorspace
A small collection of hex-colors.
Papers that mentioned: 31
pypi: grid
Volumetric data module
Papers that mentioned: 137
pypi: reshape
The missing reshape for Python
Papers that mentioned: 123