Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: colorspace
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/colorspace
A Toolbox for Manipulating and Assessing Colors and Palettes
25 versions
Latest release: over 1 year ago
235 dependent packages
841,942 downloads last month
Papers Mentioning colorspace 31
10.1371/journal.pone.0251194
A computational reproducibility study of PLOS ONE articles featuring longitudinal data analysesCited by: 15
Author(s): Heidi Seibold, Severin Czerny, Siona Decke, Roman Dieterle, Thomas Eder, Steffen Fohr, Nico Hahn, Rabea Hartmann, Christoph Heindl, Philipp Kopper, Dario Lepke, Verena Loidl, Maximilian Mandl, Sarah Musiol, Jessica Peter, Alexander Piehler, Elio Rojas, Stefanie Schmid, Hannah Schmidt, Melissa Schmoll, Lennart Schneider, Xiao-Yin To, Viêt Anh Tran, Antje Völker, Moritz Wagner, Joshua Wagner, Maria Waize, Hannah Wecker, Rui Yang, Simone Zellner, Malte Nalenz
Software Mentions: 46
Published: about 3 years ago
10.3389/fmolb.2020.570702
Prognostic Prediction Using a Stemness Index-Related Signature in a Cohort of Gastric CancerCited by: 27
Author(s): Xiaowei Chen, Dawei Zhang, Fei Jiang, Yan Shen, Xin Li, Xin Hu, Pingmin Wei, Xiaobing Shen
Software Mentions: 24
Published: about 4 years ago
10.3390/v12101142
A Diverse Virome of Leafroll-Infected Grapevine Unveiled by dsRNA SequencingCited by: 24
Author(s): Mamadou L. Fall, De-Xiang Xu, Pierre Lemoyne, Issam Moussa, Carole Beaulieu, Odile Carisse
Software Mentions: 19
Published: almost 4 years ago
10.3390/microorganisms7110547
Linking Soil Fungal Generality to Tree Richness in Young Subtropical Chinese ForestsCited by: 9
Author(s): Christina Weißbecker, Anna Heintz‐Buschart, Helge Bruelheide, François Buscot, Tesfaye Wubet
Software Mentions: 19
Published: almost 5 years ago
10.1038/s41598-020-75345-6
High gene flow maintains genetic diversity following selection for high EPSPS copy number in the weed kochia (Amaranthaceae)Cited by: 9
Author(s): Sara L. Martin, Leshawn Benedict, Wei Wei, Connie A. Sauder, Hugh J. Beckie, Linda M. Hall
Software Mentions: 17
Published: almost 4 years ago
10.1371/journal.pone.0189789
An integrative framework to reevaluate the Neotropical catfish genus Guyanancistrus (Siluriformes: Loricariidae) with particular emphasis on the Guyanancistrus brevispinis complexCited by: 11
Author(s): Sonia Fisch-Muller, Jan H. Mol, Raphaël Covain
Software Mentions: 16
Published: over 6 years ago
10.1186/s12864-016-3038-y
A full-body transcriptome and proteome resource for the European common carpCited by: 33
Author(s): Iris Kolder, Suzanne J. van der Plas-Duivesteijn, Ge Tan, G.F. Wiegertjes, Maria Forlenza, Arzu Güler, Dmitrii Y. Travin, Minoru Nakao, Tadaaki Moritomo, Ilgiz Irnazarow, Johan T. den Dunnen, Seyed Yahya Anvar, Hans J. Jansen, Ron P. Dirks, Magnus Palmblad, Boris Lenhard, Christiaan V. Henkel, Herman P. Spaink
Software Mentions: 14
Published: about 8 years ago
10.3389/fonc.2021.560136
Screening of miRNAs as Prognostic Biomarkers for Colon Adenocarcinoma and Biological Function Analysis of Their Target GenesCited by: 2
Author(s): Guoliang Zheng, Guojun Zhang, Yan Zhao, Zhichao Zheng
Software Mentions: 14
Published: over 3 years ago
10.1038/s41598-018-21217-z
Spatially-explicit valuation of coastal wetlands for cyclone mitigation in Australia and ChinaCited by: 32
Author(s): Xiaoguang Ouyang, Joe Lee, Rod M. Connolly, Martin J. Kainz
Software Mentions: 13
Published: over 6 years ago
10.1155/2021/5575286
Screening and Bioinformatics Analysis of Competitive Endogenous RNA Regulatory Network ––Related to Circular RNA in Breast CancerCited by: 3
Author(s): Tao Wang, Yi Zhang, Yan He, Yang Liu, Qi Peng
Software Mentions: 12
Published: about 3 years ago
10.1038/s41598-021-94324-z
Modest changes in Spi1 dosage reveal the potential for altered microglial function as seen in Alzheimer’s diseaseCited by: 17
Author(s): Ruth Jones, Robert Andrews, Peter Holmans, Matthew Hill, Philip R. Taylor
Software Mentions: 11
Published: about 3 years ago
10.1371/journal.pone.0220961
Bayesian hierarchical negative binomial models for multivariable analyses with applications to human microbiome count dataCited by: 4
Author(s): Amanda H. Pendegraft, Boyi Guo, Nengjun Yi
Software Mentions: 11
Published: about 5 years ago
10.18632/aging.203242
Glycolysis- and immune-related novel prognostic biomarkers of Ewing's sarcoma: glucuronic acid epimerase and triosephosphate isomerase 1Cited by: 9
Author(s): Jie Jiang, Xinli Zhan, Guoyong Xu, Tuo Liang, Chaojie Yu, Shijie Liao, Liyi Chen, Shengsheng Huang, Xuhua Sun, Ming Yi, Zide Zhang, Yuanlin Yao, Chong Liu
Software Mentions: 11
Published: about 3 years ago
10.1111/jcmm.15848
m6A RNA methylation regulators could contribute to the occurrence of chronic obstructive pulmonary diseaseCited by: 43
Author(s): Xinwei Huang, Dongjin Lv, Yao Xiao, Min Li, Hong Zhang
Software Mentions: 10
Published: almost 4 years ago
10.1371/journal.pntd.0008934
An investig-ation into the epidemiology of chikungunya virus across neglected regions of IndonesiaCited by: 6
Author(s): Sam Stubbs, Edison Johar, Frilasita A. Yudhaputri, Benediktus Yohan, Marsha S. Santoso, Rahma Hayati, Dionisius Denis, Barbara Blacklaws, Ann M. Powers, R. Tedjo Sasmono, Khin Saw Aye Myint, Simon D. W. Frost
Software Mentions: 10
Published: over 3 years ago
10.1186/s12864-019-6324-7
Identification of genetic loci and candidate genes related to soybean flowering through genome wide association studyCited by: 9
Author(s): Minmin Li, Ying Liu, Yahan Tao, Chongjing Xu, Xin Li, Xiaoming Zhang, Yingpeng Han, Xue Yang, Jingzhe Sun, Wenbin Li, Dongmei Li, Xue Zhao, Lin Zhao
Software Mentions: 10
Published: almost 5 years ago
10.1038/s41598-020-78228-y
Gastrointestinal adenocarcinoma analysis identifies promoter methylation-based cancer subtypes and signaturesCited by: 7
Author(s): Renshen Xiang, Tao Fu
Software Mentions: 10
Published: almost 4 years ago
10.3389/fmicb.2021.643730
Particle Collection in Imhoff Sedimentation Cones Enriches Both Motile Chemotactic and Particle-Attached BacteriaCited by: 8
Author(s): Anneke Heins, Greta Reintjes, Rudolf Amann, Jens Harder
Software Mentions: 10
Published: over 3 years ago
10.7150/ijms.50704
Integral Analysis of the RNA Binding Protein-associated Prognostic Model for Renal Cell CarcinomaCited by: 11
Author(s): Qin Xin, Zhengfang Liu, Yan Kou, Zhiqing Fang, Yi‐Ming Fan
Software Mentions: 9
Published: over 3 years ago
10.1155/2021/7408893
Identification of a Four-lncRNA Prognostic Signature for Colon Cancer Based on Genome InstabilityCited by: 2
Author(s): Duo Yun, Zhimin Yang
Software Mentions: 9
Published: almost 3 years ago
10.3389/fphar.2021.621359
Compound Dihuang Granule Inhibits Nigrostriatal Pathway Apoptosis in Parkinson’s Disease by Suppressing the JNK/AP-1 PathwayCited by: 8
Author(s): Li Wang, Yufang Yang, Long Chen, Zhu-qing He, Dian-yong Bi, Lei Zhang, Yuanfu Xu, Jiancheng He
Software Mentions: 9
Published: over 3 years ago
10.18632/oncotarget.9346
<i>De novo</i> HAPLN1 expression hallmarks Wnt-induced stem cell and fibrogenic networks leading to aggressive human hepatocellular carcinomasCited by: 30
Author(s): Sihem Mebarki, Romain Désert, Laurent Sulpice, Marie Sicard, Mireille Desille, Frédéric Canal, Hélène Dubois-Pot Schneider, Damien Bergeat, Bruno Turlin, Pascale Bellaud, Elise Lavergne, Rémy Le Guével, Anne Corlu, Christine Perret, Cédric Coulouarn, Bruno Clément, Orlando Musso
Software Mentions: 8
Published: over 8 years ago
10.1155/2020/2507074
A Network Pharmacology-Based Identification Study on the Mechanism of Xiao-Xu-Ming Decoction for Cerebral Ischemic StrokeCited by: 8
Author(s): Dehui Li, Yifan Su, Cheng-Yi Sun, Huanfang Fan, Weijuan Gao
Software Mentions: 8
Published: almost 4 years ago
10.3389/fmolb.2021.711239
Identification of Hub Genes and Pathways Associated With Idiopathic Pulmonary Fibrosis via Bioinformatics AnalysisCited by: 15
Author(s): Hanxi Wan, Xinwei Huang, Peilin Cong, Mengfan He, Aiwen Chen, Tingmei Wu, Danqing Dai, Wanrong Li, Xiao-Fei Gao, Tian Li, Huazheng Liang, Lize Xiong
Software Mentions: 8
Published: about 3 years ago
10.1155/2021/8897313
Systematic Investigation of the Effect of Powerful Tianma Eucommia Capsule on Ischemic Stroke Using Network PharmacologyCited by: 4
Author(s): Pengcheng Feng, Guixia Li, Yuandong Huang, Jinhong Pei
Software Mentions: 7
Published: over 3 years ago
10.3389/fgene.2020.612037
An Immune Gene-Related Five-lncRNA Signature for to Predict Glioma PrognosisCited by: 20
Author(s): Xinzhuang Wang, Ming Gao, Junyi Ye, Qiuyi Jiang, Quan Yang, Cheng Zhang, Shengtao Wang, Jian Zhang, Ligang Wang, Jianing Wu, Hua Zhan, Xu Hou, Dayong Han, Shen Zhao
Software Mentions: 7
Published: almost 4 years ago
10.1155/2021/5538643
A Network Pharmacology and Molecular Docking Strategy to Explore Potential Targets and Mechanisms Underlying the Effect of Curcumin on Osteonecrosis of the Femoral Head in Systemic Lupus ErythematosusCited by: 4
Author(s): Pan Kang, Zhigen Wu, Yue Zhong, Zihao Wang, Chi Zhou, Shaochuan Huo, Hai Bin Guo, Songtao Li, Kun Xu, Ling-yun Liu, Shuai Chen, Hong-Yu Tang, Haibin Wang
Software Mentions: 7
Published: about 3 years ago
10.1038/s41598-018-29511-6
Metabolomic analysis of mouse prefrontal cortex reveals upregulated analytes during wakefulness compared to sleepCited by: 30
Author(s): Allen K. Bourdon, Giovanna Maria Spano, William Marshall, Michele Bellesi, Giulio Tononi, Pier Andrea Serra, Helen A. Baghdoyan, Ralph Lydic, Shawn R. Campagna, Chiara Cirelli
Software Mentions: 6
Published: about 6 years ago
10.1155/2020/5786053
Integrating Network Pharmacology with Molecular Docking to Unravel the Active Compounds and Potential Mechanism of Simiao Pill Treating Rheumatoid ArthritisCited by: 16
Author(s): Mengshi Tang, Xiaoqing Xie, Pan Yi, Jin Seok Kang, Jiafen Liao, Wenqun Li, Fen Li
Software Mentions: 6
Published: almost 4 years ago
10.3390/cancers12113380
Cancer-Associated Angiogenesis: The Endothelial Cell as a Checkpoint for Immunological PatrollingCited by: 69
Author(s): Antonio Giovanni Solimando, Simona De Summa, Angelo Vacca, Doménico Ribatti
Software Mentions: 6
Published: almost 4 years ago
10.1038/s41598-021-93097-9
Identification of natural product modulators of Merkel cell carcinoma cell growth and survivalCited by: 2
Author(s): Emily A. Smith, Natasha T. Hill, Tara Gelb, Khalid A. Garman, Ekaterina I. Goncharova, Heidi R. Bokesch, Chang‐Kwon Kim, Karen L. Wendt, Robert H. Cichewicz, Kirk R. Gustafson, Isaac Brownell, Curtis J. Henrich
Software Mentions: 4
Published: about 3 years ago