Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fmolb.2020.570702

https://doi.org/10.3389/fmolb.2020.570702

Prognostic Prediction Using a Stemness Index-Related Signature in a Cohort of Gastric Cancer

Cited by: 27
Author(s): Xiaowei Chen, Dawei Zhang, Fei Jiang, Yan Shen, Xin Li, Xin Hu, Pingmin Wei, Xiaobing Shen
Published: about 4 years ago

Software Mentions 24

bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223
bioconductor: DOSE
Disease Ontology Semantic and Enrichment analysis
Papers that mentioned: 138
bioconductor: enrichplot
Visualization of Functional Enrichment Result
Papers that mentioned: 249
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: preprocessCore
A collection of pre-processing functions
Papers that mentioned: 146
cran: colorspace
A Toolbox for Manipulating and Assessing Colors and Palettes
Papers that mentioned: 31
cran: corrplot
Visualization of a Correlation Matrix
Papers that mentioned: 1,077
cran: doParallel
Foreach Parallel Adaptor for the 'parallel' Package
Papers that mentioned: 90
cran: dynamicTreeCut
Methods for Detection of Clusters in Hierarchical Clustering Dendrograms
Papers that mentioned: 49
cran: fastcluster
Fast Hierarchical Clustering Routines for R and 'Python'
Papers that mentioned: 36
cran: foreach
Provides Foreach Looping Construct
Papers that mentioned: 50
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: ggpubr
'ggplot2' Based Publication Ready Plots
Papers that mentioned: 856
cran: glmnet
Lasso and Elastic-Net Regularized Generalized Linear Models
Papers that mentioned: 1,607
cran: Hmisc
Harrell Miscellaneous
Papers that mentioned: 1,000
cran: matrixStats
Functions that Apply to Rows and Columns of Matrices (and to Vectors)
Papers that mentioned: 46
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
cran: rms
Regression Modeling Strategies
Papers that mentioned: 1,236
cran: stringi
Fast and Portable Character String Processing Facilities
Papers that mentioned: 34
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: colorspace
A small collection of hex-colors.
Papers that mentioned: 31
pypi: dynamicTreeCut
Dynamic Tree Cut
Papers that mentioned: 49
pypi: fastcluster
Fast hierarchical clustering routines for R and Python.
Papers that mentioned: 36
pypi: glmnet
Python wrapper for glmnet
Papers that mentioned: 1,607