Ecosyste.ms: Papers

10.1186/s12864-016-3387-6

HiC-bench: comprehensive and reproducible Hi-C data analysis designed for parameter exploration and benchmarking
Cited by: 64
Author(s): Charalampos Lazaris, Stephen M. Kelly, Panagiotis Ntziachristos, Iannis Aifantis, Aristotelis Tsirigos
Software Mentions: 28
Published: almost 8 years ago

10.3389/fmicb.2018.01474

Distinct Oceanic Microbiomes From Viruses to Protists Located Near the Antarctic Circumpolar Current
Cited by: 24
Author(s): Flavia Flaviani, Declan C. Schroeder, Karen Lebret, Cecilia Balestreri, Andrea Highfield, Joanna L. Schroeder, Sally Thorpe, Karen Moore, Konrad Pasckiewicz, Maya C. Pfaff, Edward P. Rybicki
Software Mentions: 27
Published: over 6 years ago

10.3390/s20247188

Which Are the Central Aspects of Infant Sleep? The Dynamics of Sleep Composites across Infancy
Cited by: 17
Author(s): Sarah F. Schoch, Reto Huber, Malcolm Kohler, Salomé Kurth
Software Mentions: 26
Published: about 4 years ago

10.1080/19490976.2021.1940792

Antibiotic-driven intestinal dysbiosis in pediatric short bowel syndrome is associated with persistently altered microbiome functions and gut-derived bloodstream infections
Cited by: 13
Author(s): Robert Thänert, Anna Thänert, Jocelyn Ou, Adam Bajinting, Carey Ann D. Burnham, Holly J. Engelstad, Maria E. Tecos, I. Malick Ndao, Carla Hall-Moore, Colleen Rouggly-Nickless, Mike A. Carl, Deborah C. Rubin, Nicholas O. Davidson, Phillip I. Tarr, Barbara B. Warner, Gautam Dantas, Brad W. Warner
Software Mentions: 22
Published: almost 4 years ago

10.3390/ijerph17114132

Data-Driven Modeling and the Influence of Objective Function Selection on Model Performance in Limited Data Regions
Cited by: 4
Author(s): Thelma Dede Baddoo, Zhijia Li, Yiqing Guan, Kenneth Rodolphe Chabi Boni, Isaac Kwesi Nooni
Software Mentions: 21
Published: over 4 years ago

10.1186/s12864-017-4353-7

DNA methylation regulates discrimination of enhancers from promoters through a H3K4me1-H3K4me3 seesaw mechanism
Cited by: 72
Author(s): Ali Sharifi-Zarchi, Daniela Gerovska, Kenjiro Adachi, Mehdi Totonchi, Hamid Pezeshk, Ryan J. Taft, Hans R. Schöler, Hamidreza Chitsaz, Mehdi Sadeghi, Hossein Baharvand, Marcos J. Araúzo-Bravo
Software Mentions: 21
Published: about 7 years ago

10.7717/peerj.2836

Rhea: a transparent and modular R pipeline for microbial profiling based on 16S rRNA gene amplicons
Cited by: 273
Author(s): Ilias Lagkouvardos, Sandra E. Fischer, Neeraj Kumar, Thomas Clavel
Software Mentions: 20
Published: almost 8 years ago

10.3390/s19204551

Assessing Older Adults’ Daily Mobility: A Comparison of GPS-Derived and Self-Reported Mobility Indicators
Cited by: 24
Author(s): Michelle Pasquale Fillekes, Eun Kyeong Kim, Rieke Trumpf, Wiebren Zijlstra, Eleftheria Giannouli, Robert Weibel
Software Mentions: 19
Published: about 5 years ago

10.1371/journal.pone.0061217

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
Cited by: 11,386
Author(s): Paul J. McMurdie, Susan Holmes
Software Mentions: 19
Published: over 11 years ago

10.1016/j.scitotenv.2020.140792

ESPRES: A web application for interactive analysis of multiple pressures in aquatic ecosystems
Cited by: 4
Author(s): Ángel Údias, Alberto Pistocchi, Olga Vigiak, Bruna Grizzetti, F. Bouraoui, César Alfaro
Software Mentions: 18
Published: about 4 years ago

10.1371/journal.pone.0195970

The importance of regional models in assessing canine cancer incidences in Switzerland
Cited by: 4
Author(s): Gianluca Boo, Stefan Leyk, Chris Brunsdon, Ricarda Graf, Andreas Pospischil, Sara Irina Fabrikant
Software Mentions: 18
Published: over 6 years ago

10.1186/s12942-019-0181-0

Towards a comprehensive set of GPS-based indicators reflecting the multidimensional nature of daily mobility for applications in health and aging research
Cited by: 47
Author(s): Michelle Pasquale Fillekes, Eleftheria Giannouli, Eun Kyeong Kim, Wiebren Zijlstra, Robert Weibel
Software Mentions: 18
Published: over 5 years ago

10.1038/s41598-020-75345-6

High gene flow maintains genetic diversity following selection for high EPSPS copy number in the weed kochia (Amaranthaceae)
Cited by: 9
Author(s): Sara L. Martin, Leshawn Benedict, Wei Wei, Connie A. Sauder, Hugh J. Beckie, Linda M. Hall
Software Mentions: 17
Published: about 4 years ago

10.1038/s41419-021-03909-z

Diagnostic and prognostic potential of the proteomic profiling of serum-derived extracellular vesicles in prostate cancer
Cited by: 14
Author(s): Michele Signore, Romina Alfonsi, Giulia Federici, Simona Nanni, Antonio Addario, Lucia Bertuccini, Aurora Aiello, Anna Pace, Isabella Sperduti, Giovanni Muto, Alessandro Giacobbe, Devis Collura, Lidia Brunetto, Giuseppe Simone, Manuela Costantini, Lucio Crinò, Stefania Rossi, Claudio Tabolacci, Marco Diociaiuti, Tania Merlino, Michele Gallucci, Steno Sentinelli, Rocco Papalia, Ruggero De Maria, Dèsirèe Bonci
Software Mentions: 16
Published: over 3 years ago

10.1371/journal.pone.0244876

Predicting drug-metagenome interactions: Variation in the microbial β-glucuronidase level in the human gut metagenomes
Cited by: 12
Author(s): Moamen M. Elmassry, Sunghwan Kim, Ben Busby
Software Mentions: 16
Published: almost 4 years ago

10.1038/s41598-020-63428-3

No evidence of spontaneous preference for slowly moving objects in visually naïve chicks
Cited by: 7
Author(s): Bastien S. Lemaire
Software Mentions: 15
Published: over 4 years ago

10.3389/fimmu.2021.668391

A Transcriptional Signature of PDGF-DD Activated Natural Killer Cells Predicts More Favorable Prognosis in Low-Grade Glioma
Cited by: 21
Author(s): Yuhan Sun, Alexander James Sedgwick, Yaseelan Palarasah, Stefano Mangiola, Alexander D. Barrow
Software Mentions: 15
Published: over 3 years ago

10.3389/fmicb.2015.00104

Long-term forest soil warming alters microbial communities in temperate forest soils
Cited by: 237
Author(s): Kristen M. DeAngelis, Grace Pold, Begüm D. Topçuoğlu, Linda T. A. van Diepen, Rebecca Varney, Jeffrey L. Blanchard, Jerry M. Melillo, Serita D. Frey
Software Mentions: 15
Published: almost 10 years ago

10.3390/ijms21239157

NF-Y Overexpression in Liver Hepatocellular Carcinoma (HCC)
Cited by: 16
Author(s): Eugenia Bezzecchi, Mirko Ronzio, Roberto Mantovani, Diletta Dolfini
Software Mentions: 15
Published: about 4 years ago

10.3758/s13420-020-00446-1

Response of male and female domestic chicks to change in the number (quantity) of imprinting objects
Cited by: 5
Author(s): Bastien S. Lemaire, Rosa Rugani, Lucia Regolin, Giorgio Vallortígara
Software Mentions: 14
Published: about 4 years ago

10.3390/ani10071151

Tenebrio molitor Larvae Meal Affects the Cecal Microbiota of Growing Pigs
Cited by: 8
Author(s): Sandra De Meyer, Denise K. Geßner, Garima Maheshwari, Julia Röhrig, Theresa Friedhoff, Erika Most, Holger Zorn, Robert Ringseis, Klaus Eder
Software Mentions: 14
Published: over 4 years ago

10.3390/microorganisms9061222

Salivary Microbiome Diversity in Kuwaiti Adolescents with Varied Body Mass Index—A Pilot Study
Cited by: 5
Author(s): Hend Alqaderi, Meganathan P. Ramakodi, Rasheeba Nizam, Sindhu Jacob, Sriraman Devarajan, Muthukrishnan Eaaswarkhanth, Fahd Al-Mulla
Software Mentions: 14
Published: over 3 years ago

10.3390/microorganisms9061167

Diversity and Oil Degradation Potential of Culturable Microbes Isolated from Chronically Contaminated Soils in Trinidad
Cited by: 10
Author(s): Amanda C. Ramdass, Sephra N. Rampersad
Software Mentions: 14
Published: over 3 years ago

10.1038/srep30325

In silico synchronization reveals regulators of nuclear ruptures in lamin A/C deficient model cells
Cited by: 72
Author(s): Joke Robijns, Freya Molenberghs, Tom Sieprath, Tobias Corne, Marlies Verschuuren, Winnok H. De Vos
Software Mentions: 14
Published: over 8 years ago

10.1371/journal.pone.0248202

Host-specific gene expression as a tool for introduction success in Naupactus parthenogenetic weevils
Cited by: 1
Author(s): Ava Mackay-Smith, Mary Kate Dornon, R.E. Lucier, Annalisa Okimoto, Flavia Mendonca de Sousa, Marcela Silvina Rodriguero, Viviana A. Confalonieri, Analía Alicia Lanteri, Andrea S. Sequeira
Software Mentions: 14
Published: over 3 years ago

10.3389/fvets.2019.00045

Exploring Uncertainty in Canine Cancer Data Sources Through Dasymetric Refinement
Cited by: 5
Author(s): Gianluca Boo, Stefan Leyk, Sara Irina Fabrikant, Ricarda Graf, Andreas Pospischil
Software Mentions: 13
Published: almost 6 years ago

10.3389/fpls.2020.01206

Similar Arbuscular Mycorrhizal Fungal Communities in 31 Durum Wheat Cultivars (Triticum turgidum L. var. durum) Under Field Conditions in Eastern Canada
Cited by: 16
Author(s): Franck Stefani, Sarah Dupont, Mario Laterrière, Ron Knox, Yuefeng Ruan, Chantal Hamel, Mohamed Hijri
Software Mentions: 13
Published: over 4 years ago

10.3389/fonc.2020.01767

Ovarian Blood Sampling Identifies Junction Plakoglobin as a Novel Biomarker of Early Ovarian Cancer
Cited by: 6
Author(s): Florian Weiland, Noor A. Lokman, Manuela Klingler‐Hoffmann, Thomas W. Jobling, Andrew N. Stephens, Karin Sundfeldt, Peter Hoffmann, Martin K. Oehler
Software Mentions: 13
Published: about 4 years ago

10.3389/fmicb.2019.00665

Microbial Diversity and Connectivity in Deep-Sea Sediments of the South Atlantic Polar Front
Cited by: 31
Author(s): Gilda Varliero, Christina Bienhold, Florian Schmid, Antje Boetius, Massimiliano Molari
Software Mentions: 13
Published: over 5 years ago

10.1002/ece3.5968

Contrasting responses to climate change at Himalayan treelines revealed by population demographics of two dominant species
Cited by: 23
Author(s): Kumar P. Mainali, Bharat Babu Shrestha, Ravi Kumar Sharma, Arjun Adhikari, Eliezer Gurarie, Michael C. Singer, Camille Parmesan
Software Mentions: 13
Published: almost 5 years ago

10.3389/fmicb.2019.00697

Taxonomic and Functional Characterization of the Microbial Community During Spontaneous in vitro Fermentation of Riesling Must
Cited by: 28
Author(s): Kimmo Sirén, Sarah S.T. Mak, Chrats Melkonian, Christian Carøe, Jan H. Swiegers, Douwe Molenaar, Ulrich Fischer, M. Thomas P. Gilbert
Software Mentions: 12
Published: over 5 years ago

10.3390/toxins12070433

Low Doses of Mycotoxin Mixtures below EU Regulatory Limits Can Negatively Affect the Performance of Broiler Chickens: A Longitudinal Study
Cited by: 26
Author(s): Oluwatobi Kolawole, A. Graham, Caroline Julie Donaldson, B. Owens, Wilfred A. Abia, Julie Meneely, M. Alcorn, Lisa Connolly, Chris Elliott
Software Mentions: 12
Published: over 4 years ago

10.1038/s41416-019-0519-1

Stroma-normalised vessel density predicts benefit from adjuvant fluorouracil-based chemotherapy in patients with stage II/III colon cancer
Cited by: 5
Author(s): Artur Mezheyeuski, Ina Hrynchyk, Mercedes Herrera, Mia Karlberg, Erik Osterman, Peter Ragnhammar, David Edler, Anna Portyanko, Fredrik Pontén, Tobias Sjöblom, Bengt Glimelius, Arne Östman
Software Mentions: 12
Published: over 5 years ago

10.1038/s41598-021-86989-3

Stability and individual variability of social attachment in imprinting
Cited by: 15
Author(s): Bastien S. Lemaire, Daniele Rucco, Mathilde Josserand, Giorgio Vallortígara, Elisabetta Versace
Software Mentions: 12
Published: over 3 years ago

10.3389/fnbeh.2021.675994

Resurgence of an Inborn Attraction for Animate Objects via Thyroid Hormone T3
Cited by: 8
Author(s): Elena Lorenzi, Bastien S. Lemaire, Elisabetta Versace, Toshiya Matsushima, Giorgio Vallortígara
Software Mentions: 12
Published: over 3 years ago

10.1371/journal.pone.0236305

Defining the sediment prokaryotic communities of the Indian River Lagoon, FL, USA, an Estuary of National Significance
Cited by: 7
Author(s): David J. Bradshaw, Nicholas J. Dickens, John H. Trefry, Peter J. McCarthy
Software Mentions: 12
Published: about 4 years ago

10.1371/journal.pone.0236135

Fungi, bacteria and oomycota opportunistically isolated from the seagrass, Zostera marina
Cited by: 25
Author(s): Cassandra L. Ettinger, Jonathan A. Eisen
Software Mentions: 12
Published: over 4 years ago

10.1186/s12915-016-0258-1

The native microbiome of the nematode Caenorhabditis elegans: gateway to a new host-microbiome model
Cited by: 283
Author(s): Philipp Dirksen, Sarah Arnaud Marsh, Ines Braker, Nele Heitland, Sophia Wagner, Rania Nakad, Sebastian Mäder, Carola Petersen, Vienna Kowallik, Philip Rosenstiel, Marie‐Anne Félix, Hinrich Schulenburg
Software Mentions: 12
Published: over 8 years ago

10.3758/s13428-020-01385-5

Improving the robustness of infant lexical processing speed measures
Cited by: 7
Author(s): Julia Egger, Caroline F. Rowland, Christina Bergmann
Software Mentions: 11
Published: over 4 years ago

10.1038/srep26929

High-throughput and Cost-effective Chicken Genotyping Using Next-Generation Sequencing
Cited by: 43
Author(s): Fábio Pértille, Carlos Guerrero-Bosagna, Vinícius da Silva, Clarissa Boschiero, José de Ribamar da Silva Nunes, Mônica Corrêa Ledur, Per Jensen, Luiz Lehmann Coutinho
Software Mentions: 11
Published: over 8 years ago

10.3390/cancers12123800

Dynamics of Fecal Microbiota with and without Invasive Cervical Cancer and Its Application in Early Diagnosis
Cited by: 14
Author(s): Gi-Ung Kang, Da-Ryung Jung, Yoon Hee Lee, Se Young Jeon, Hyung Soo Han, Gun Oh Chong, Jae‐Ho Shin
Software Mentions: 11
Published: about 4 years ago

10.1371/journal.pone.0220961

Bayesian hierarchical negative binomial models for multivariable analyses with applications to human microbiome count data
Cited by: 4
Author(s): Amanda H. Pendegraft, Boyi Guo, Nengjun Yi
Software Mentions: 11
Published: over 5 years ago

10.15252/msb.20177697

Screening drug effects in patient‐derived cancer cells links organoid responses to genome alterations
Cited by: 153
Author(s): Julia Jabs, Franziska Maria Zickgraf, Jeongbin Park, Sven Wagner, Xiaoqi Jiang, Katharina Jechow, Kortine Kleinheinz, Umut Toprak, Marc A. Schneider, Michael Meister, Saskia Spaich, Marc Sütterlin, Matthias Schlesner, Andreas Trumpp, Martin R. Sprick, Roland Eils, Christian Conrad
Software Mentions: 11
Published: about 7 years ago

10.3389/fimmu.2018.02191

Single Cell RNA Sequencing Identifies HSPG2 and APLNR as Markers of Endothelial Cell Injury in Systemic Sclerosis Skin
Cited by: 48
Author(s): Sokratis A. Apostolidis, Giuseppina Stifano, Tracy Tabib, Lisa Rice, Christina Morse, Bashar Kahaleh, Robert Lafyatis
Software Mentions: 11
Published: about 6 years ago

10.1093/database/bay033

The tragedy of the biodiversity data commons: a data impediment creeping nigher?
Cited by: 11
Author(s): Nora Escribano, David Galicia, Arturo H. Ariño
Software Mentions: 10
Published: almost 7 years ago

10.1093/molbev/msu269

Evaluating the Use of ABBA–BABA Statistics to Locate Introgressed Loci
Cited by: 488
Author(s): Simon H. Martin, John W. Davey, Chris D. Jiggins
Software Mentions: 10
Published: about 10 years ago

10.1038/s41598-019-46290-w

GeneHunt for rapid domain-specific annotation of glycoside hydrolases
Cited by: 14
Author(s): SC Nguyen, A. Flores, D. Talamantes, Furqan Dar, Adrian Roy L. Valdez, Jason P. Schwans, Renaud Berlemont
Software Mentions: 10
Published: over 5 years ago

10.1371/journal.pone.0191601

Highly multiplexed single-cell quantitative PCR
Cited by: 12
Author(s): Michael VanInsberghe, Hans Zahn, Alexander D. White, Oleh I. Petriv, Carl L. Hansen
Software Mentions: 10
Published: almost 7 years ago

10.1172/jci.insight.145854

Cell-autonomous retinoic acid receptor signaling has stage-specific effects on mouse enteric nervous system
Cited by: 6
Author(s): Tao Gao, Elizabeth C. Wright-Jin, Rajarshi Sengupta, Jessica B. Anderson, Robert O. Heuckeroth
Software Mentions: 10
Published: over 3 years ago

10.1093/gbe/evz003

Repeated Evolution Versus Common Ancestry: Sex Chromosome Evolution in the Haplochromine Cichlid<i>Pseudocrenilabrus philander</i>
Cited by: 25
Author(s): Astrid Böhne, Alexandra Anh‐Thu Weber, Jelena Rajkov, Michael Rechsteiner, Andrin Riss, Bernhard Egger, Walter Salzburger
Software Mentions: 10
Published: almost 6 years ago

10.3389/fmicb.2020.00037

FeGenie: A Comprehensive Tool for the Identification of Iron Genes and Iron Gene Neighborhoods in Genome and Metagenome Assemblies
Cited by: 164
Author(s): Arkadiy I. Garber, Kenneth H. Nealson, Akimitsu Okamoto, Sean M. McAllister, Clara S. Chan, Roman A. Barco, Nancy Merino
Software Mentions: 10
Published: almost 5 years ago

10.1186/s12940-021-00693-3

Examining the role of wind in human illness due to pesticide drift in Washington state, 2000–2015
Cited by: 3
Author(s): Edward J. Kasner, Joanne Bonnar Prado, Michael G. Yost, Richard A. Fenske
Software Mentions: 10
Published: almost 4 years ago

10.1371/journal.pone.0078009

Frequency Response and Gap Tuning for Nonlinear Electrical Oscillator Networks
Cited by: 0
Author(s): Harish S. Bhat, Garnet J. Vaz
Software Mentions: 9
Published: about 11 years ago

10.1098/rspb.2018.0270

Evolutionary adaptation to aquatic lifestyle in extinct sloths can lead to systemic alteration of bone structure
Cited by: 20
Author(s): Eli Amson, Guillaume Billet, Christian de Muizon
Software Mentions: 9
Published: over 6 years ago

10.1186/s12885-021-08470-8

Alternative splicing associated with cancer stemness in kidney renal clear cell carcinoma
Cited by: 12
Author(s): Lixing Xiao, Guoying Zou, Rui Cheng, Pingping Wang, Kexin Ma, Huimin Cao, Wenyang Zhou, Xiyun Jin, Zhaochun Xu, Yan Huang, Xiaoyu Lin, Huan Nie, Qinghua Jiang
Software Mentions: 9
Published: over 3 years ago

10.3389/fmolb.2021.686110

Investigating the Role of Root Exudates in Recruiting Streptomyces Bacteria to the Arabidopsis thaliana Microbiome
Cited by: 14
Author(s): Sarah F. Worsley, Michael C. Macey, Samuel M. M. Prudence, Barrie Wilkinson, J. Colin Murrell, Matthew I. Hutchings
Software Mentions: 9
Published: over 3 years ago

10.1186/s12886-016-0335-9

Systemic confounders affecting serum measurements of omega-3 and -6 polyunsaturated fatty acids in patients with retinal disease
Cited by: 5
Author(s): Anima Bühler, Felicitas Bucher, Michael Augustynik, Jan Wöhrl, Gottfried Martin, Günther Schlunck, Hansjürgen Agostini, Daniel Böhringer, Gerhard Pütz, Andreas Stahl
Software Mentions: 9
Published: over 8 years ago

10.1186/1471-2288-14-91

Comparing classification methods for diffuse reflectance spectra to improve tissue specific laser surgery
Cited by: 8
Author(s): Alexander Engelhardt, Rajesh Kanawade, Christian Knipfer, Matthias Schmid, Florian Stelzle, Werner Adler
Software Mentions: 9
Published: over 10 years ago

10.3389/fimmu.2021.709173

The Role of Hemoglobin Subunit Delta in the Immunopathy of Multiple Sclerosis: Mitochondria Matters
Cited by: 6
Author(s): Afshin Derakhshani, Hossein Safarpour, Behzad Baradaran, Nima Hemmat, Patrizia Leone, Zahra Asadzadeh, Mehrdad Pashazadeh, Behzad Baradaran, Vito Racanelli
Software Mentions: 9
Published: over 3 years ago

10.1371/journal.pone.0190195

Additional statistical and graphical methods for analyzing site formation processes using artifact orientations
Cited by: 39
Author(s): Shannon P. McPherron
Software Mentions: 9
Published: almost 7 years ago

10.1038/srep40950

Unique Bacteria Community Composition and Co-occurrence in the Milk of Different Ruminants
Cited by: 21
Author(s): Zhipeng Li, André‐Denis G. Wright, Yumei Yang, Huazhe Si, Guangyu Li
Software Mentions: 9
Published: almost 8 years ago

10.1371/journal.pone.0245639

Are we missing the forest for the trees? Conspecific negative density dependence in a temperate deciduous forest
Cited by: 3
Author(s): Kathryn E. Barry, Stefan A. Schnitzer
Software Mentions: 8
Published: over 3 years ago

10.3390/genes10110937

NF-YA Overexpression in Lung Cancer: LUSC
Cited by: 28
Author(s): Eugenia Bezzecchi, Mirko Ronzio, Diletta Dolfini, Roberto Mantovani
Software Mentions: 8
Published: about 5 years ago

10.7717/peerj.8667

Element concentrations in pelagic<i>Sargassum</i>along the Mexican Caribbean coast in 2018-2019
Cited by: 78
Author(s): Rosa E. Rodríguez-Martínez, Priyadarsi D. Roy, Nuria Torrescano-Valle, Nancy Cabañillas-Terán, Silvia Carrillo‐Domínguez, Ligia Collado‐Vides, Marta García-Sánchez, Brigitta I. van Tussenbroek
Software Mentions: 8
Published: almost 5 years ago

10.1093/toxsci/kfaa058

Blinded, Multicenter Evaluation of Drug-induced Changes in Contractility Using Human-induced Pluripotent Stem Cell-derived Cardiomyocytes
Cited by: 44
Author(s): Umber Saleem, Berend J. van Meer, Puspita A Katili, Nurul A N Mohd Yusof, Ingra Mannhardt, Ana Krotenberg Garcia, Leon G.J. Tertoolen, Tessa de Korte, Maria L. H. Vlaming, Karen McGlynn, Jessica Nebel, Anthony Bahinski, Kate Harris, Eric I. Rossman, Xiaoping Xu, Francis L. Burton, Godfrey L. Smith, Peter Clements, Christine L. Mummery, Thomas Eschenhagen, Arne Hansen, Chris Denning
Software Mentions: 8
Published: over 4 years ago

10.3389/fmicb.2021.627437

A Taxon-Wise Insight Into Rock Weathering and Nitrogen Fixation Functional Profiles of Proglacial Systems
Cited by: 4
Author(s): Gilda Varliero, Alexandre M. Anesio, Gary Barker
Software Mentions: 8
Published: over 3 years ago

10.1186/s12864-020-6764-0

Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum
Cited by: 15
Author(s): Alice B. Dennis, Gabriel I. Ballesteros, Stéphanie Robin, Lukas Schrader, Jens Bast, Jan Berghöfer, Leo W. Beukeboom, Maya Belghazi, Anthony Bretaudeau, Jan Buellesbach, Elizabeth Cash, Dominique Colinet, Zoé Dumas, Mohammed Errbii, Patrizia Falabella, Jean‐Luc Gatti, Elzemiek Geuverink, Joshua D. Gibson, Corinne Hertaeg, Stefanie Hartmann, Emmanuelle Jacquin‐Joly, Mark Lammers, Blas I. Lavandero, Ina Lindenbaum, Lauriane Massardier-Galatà, Camille Meslin, Nicolas Montagné, Nina Pak, Marylène Poirié, Rosanna Salvia, Chris R. Smith, Denis Tagu, Sophie Tarès, Heiko Vogel, Tanja Schwander, Jean Simon, Christian C. Figueroa, Christoph Vorburger, Fabrice Legeai, Jürgen Gadau
Software Mentions: 8
Published: over 4 years ago

10.3389/fmicb.2021.656250

Temperature and Nutrient Limitations Decrease Transfer of Conjugative IncP-1 Plasmid pKJK5 to Wild Escherichia coli Strains
Cited by: 15
Author(s): Rebeca Pallares-Vega, G. Macedo, Michael S.M. Brouwer, Lucía Hernández Leal, Peter van der Maas, Mark C.M. van Loosdrecht, David G. Weissbrodt, Dick Heederik, Dik Mevius, Heike Schmitt
Software Mentions: 7
Published: over 3 years ago

10.3390/md18080379

Laminariales Host Does Impact Lipid Temperature Trajectories of the Fungal Endophyte Paradendryphiella salina (Sutherland.)
Cited by: 2
Author(s): Marine Vallet, Tarik Méziane, Najet Thiney, Soizic Prado, Cédric Hubas
Software Mentions: 7
Published: over 4 years ago

10.3390/v12010078

Antibody Responses against Enterovirus Proteases are Potential Markers for an Acute Infection
Cited by: 7
Author(s): Niila V. V. Saarinen, Virginia M. Stone, Minna M. Hankaniemi, Magdalena A. Mazur, Tytti Vuorinen, Malin Flodström‐Tullberg, Heikki Hyöty, Vesa P. Hytönen, Olli H. Laitinen
Software Mentions: 7
Published: almost 5 years ago

10.1155/2018/7938492

Clinical and Radiographic Characteristics as Predictive Factors of Swelling and Trismus after Mandibular Third Molar Surgery: A Longitudinal Approach
Cited by: 11
Author(s): José Manuel Pérez-González, Vicente Esparza‐Villalpando, Ricardo Martínez-Rider, Miguel Ángel Noyola-Frías, Amaury Pozos‐Guillén
Software Mentions: 7
Published: almost 7 years ago

10.1371/journal.pone.0208874

Assessing sound symbolism: Investigating phonetic forms, visual shapes and letter fonts in an implicit bouba-kiki experimental paradigm
Cited by: 5
Author(s): Léa De Carolis, Egidio Marsico, Vincent Arnaud, Christophe Coupé
Software Mentions: 7
Published: about 6 years ago

10.3389/fmicb.2020.00765

Exploring the Relationship Among Divergence Time and Coding and Non-coding Elements in the Shaping of Fungal Mitochondrial Genomes
Cited by: 10
Author(s): Paula Luize Camargos Fonseca, Fernanda Badotti, Ruth B De-Paula, Daniel S. Araújo, Dener Eduardo Bortolini, Luiz-Eduardo Del-Bem, Vasco Azevedo, Bertram Brenig, Eric Roberto Guimarães Rocha Aguiar, Aristóteles Goés-Neto
Software Mentions: 7
Published: over 4 years ago

10.3390/genes11020198

NF-YA Overexpression in Lung Cancer: LUAD
Cited by: 17
Author(s): Eugenia Bezzecchi, Mirko Ronzio, Valentina Semeghini, Valentina Andrioletti, Roberto Mantovani, Diletta Dolfini
Software Mentions: 7
Published: almost 5 years ago

10.1016/j.heliyon.2020.e03214

Age, gender, personality, ideological attitudes and individual differences in a person's news spectrum: how many and who might be prone to “filter bubbles” and “echo chambers” online?
Cited by: 34
Author(s): Cornelia Sindermann, Jon D. Elhai, Morten Moshagen, Christian Montag
Software Mentions: 7
Published: almost 5 years ago

10.1172/jci.insight.138066

Effector Vγ9Vδ2 T cell response to congenital Toxoplasma gondii infection
Cited by: 3
Author(s): Lifang Ma, Maria V. Papadopoulou, Martin Taton, Francesca Genco, Arnaud Marchant, Valeria Meroni, David Vermijlen
Software Mentions: 7
Published: over 3 years ago

10.1098/rsos.170051

Contradicting habitat type-extinction risk relationships between living and fossil amphibians
Cited by: 3
Author(s): Melanie Tietje, Mark‐Oliver Rödel
Software Mentions: 7
Published: over 7 years ago

10.1038/s41598-018-29373-y

Experimentally induced metamorphosis in highly regenerative axolotl (ambystoma mexicanum) under constant diet restructures microbiota
Cited by: 25
Author(s): Turan Demircan, Guvanch Ovezmyradov, Berna Yıldırım, İlknur Keskin, Ayşe Elif İlhan, Ece Cana Fesçioğlu, Gürkan Öztürk, Süleyman Yıldırım
Software Mentions: 7
Published: over 6 years ago

10.3390/nu10091254

Changes in Plasma Acylcarnitine and Lysophosphatidylcholine Levels Following a High-Fructose Diet: A Targeted Metabolomics Study in Healthy Women
Cited by: 26
Author(s): Anita Gonzalez‐Granda, Antje Damms-Machado, Maryam Basrai, Stephan C. Bischoff
Software Mentions: 7
Published: over 6 years ago

10.3390/nu12113444

Fructose-Induced Intestinal Microbiota Shift Following Two Types of Short-Term High-Fructose Dietary Phases
Cited by: 31
Author(s): Julia Beisner, Anita Gonzalez‐Granda, Maryam Basrai, Antje Damms-Machado, Stephan C. Bischoff
Software Mentions: 7
Published: about 4 years ago

10.1038/s41426-018-0118-x

Comparative genomics of <i>Campylobacter concisus</i>: Analysis of clinical strains reveals genome diversity and pathogenic potential
Cited by: 22
Author(s): Matthew Gemmell, Susan H. Berry, Indrani Mukhopadhya, Richard Hansen, Hans Linde Nielsen, Mona Bajaj-Elliott, Henrik Nielsen, Georgina L. Hold
Software Mentions: 6
Published: over 6 years ago

10.1007/s40037-018-0438-5

#MedEd: exploring the relationship between altmetrics and traditional measures of dissemination in health professions education
Cited by: 38
Author(s): Lauren A. Maggio, Todd C. Leroux, Holly Meyer, Anthony R. Artino
Software Mentions: 6
Published: over 6 years ago

10.1186/s13568-016-0191-2

Automation of antimicrobial activity screening
Cited by: 8
Author(s): Samuel P. Forry, Meggan C. Madonna, Daneli López-Pérez, Nancy J. Lin, Madeleine D. Pasco
Software Mentions: 6
Published: almost 9 years ago

10.3389/fphar.2021.630457

Derivation of a Human In Vivo Benchmark Dose for Perfluorooctanoic Acid From ToxCast In Vitro Concentration–Response Data Using a Computational Workflow for Probabilistic Quantitative In Vitro to In Vivo Extrapolation
Cited by: 8
Author(s): George Loizou, Kevin McNally, Jean-Lou C.M. Dorne, Alex Hogg
Software Mentions: 6
Published: over 3 years ago

10.1038/s41409-019-0520-6

High-resolution HLA phased haplotype frequencies to predict the success of unrelated donor searches and clinical outcome following hematopoietic stem cell transplantation
Cited by: 10
Author(s): Stéphane Bühler, Helen Baldomero, Sylvie Ferrari‐Lacraz, José Manuel Nunes, Alicia Sanchez‐Mazas, Stravroula Massouridi-Levrat, Dominik Heim, Jörg Halter, Nair Gayathri, Yves Chalandon, Urs Schanz, Tayfun Güngör, Grazia Nicoloso, Jean‐Marie Tiercy, Jakob Passweg, Jean Villard
Software Mentions: 6
Published: over 5 years ago

10.3390/biom9090396

Jumping on the Edge—First Evidence for a 2 × 6-meric Hemocyanin in Springtails
Cited by: 0
Author(s): Juliane Schmidt, Heinz Decker, Michael Thomas Marx
Software Mentions: 6
Published: over 5 years ago

10.1002/ece3.7129

A new approach to assessing the space use behavior of macroinvertebrates by automated video tracking
Cited by: 9
Author(s): Milad Shokri, Francesco Cozzoli, Mario Ciotti, Vojsava Gjoni, Vanessa Marrocco, Fabio Vignes, Alberto Basset
Software Mentions: 6
Published: almost 4 years ago

10.1002/ece3.3638

Assessing the utility of metabarcoding for diet analyses of the omnivorous wild pig (<i>Sus scrofa</i>)
Cited by: 54
Author(s): Michael S. Robeson, Kamil Khanipov, George Golovko, Samantha M. Wisely, Michael D. White, Michael J. Bodenchuck, Timothy J. Smyser, Yuriy Fofanov, Noah Fierer, Antoinette J. Piaggio
Software Mentions: 6
Published: about 7 years ago

10.3389/fphar.2019.01394

Development, Testing, Parameterization, and Calibration of a Human Physiologically Based Pharmacokinetic Model for the Plasticizer, Hexamoll® Diisononyl-Cyclohexane-1, 2-Dicarboxylate Using In Silico, In Vitro, and Human Biomonitoring Data
Cited by: 9
Author(s): Kevin McNally, Craig Sams, George Loizou
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0102079

Harnessing Gene Expression Networks to Prioritize Candidate Epileptic Encephalopathy Genes
Cited by: 25
Author(s): Karen Oliver, Vesna Lukić, Natalie Thorne, Samuel F. Berkovic, Ingrid E. Scheffer, Melanie Bahlo
Software Mentions: 6
Published: over 10 years ago

10.1371/journal.pone.0151325

Coho Salmon (Oncorhynchus kisutch) Prefer and Are Less Aggressive in Darker Environments
Cited by: 28
Author(s): Leigh Gaffney, Becca Franks, Daniel M. Weary, M.A.G. von Keyserlingk
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.pone.0130084

Baseline Assessment of Mesophotic Reefs of the Vitória-Trindade Seamount Chain Based on Water Quality, Microbial Diversity, Benthic Cover and Fish Biomass Data
Cited by: 51
Author(s): Pedro Milet Meirelles, Gilberto M. Amado‐Filho, Guilherme H. Pereira-Filho, Hudson T. Pinheiro, Rodrigo L. Moura, Jean‐Christophe Joyeux, Eric F. Mazzei, Alex Cardoso Bastos, Robert A. Edwards, Elizabeth A. Dinsdale, Rodolfo Paranhos, Eidy de Oliveira Santos, Tetsuya Iida, Kazuyoshi Gotoh, Shota Nakamura, Tomoo Sawabe, Carlos Eduardo de Rezende, Luiz M. R. Gadelha, Ronaldo B. Francini‐Filho, Cristiane Thompson, Fabiano L. Thompson
Software Mentions: 5
Published: over 9 years ago

10.1017/S003118201400050X

A longitudinal assessment of the serological response to<i>Theileria parva</i>and other tick-borne parasites from birth to one year in a cohort of indigenous calves in western Kenya
Cited by: 17
Author(s): Henry K. Kiara, Amy Jennings, Barend M. deC. Bronsvoort, Ian Handel, Samuel M. Thumbi, Mary Mbole-Kariuki, Ilana Conradie van Wyk, Elizabeth J. Poole, Olivier Hanotte, Jacobus A.W. Coetzer, Mark Woolhouse, Philip G. Toye
Software Mentions: 5
Published: over 10 years ago

10.3389/fmicb.2016.02079

Fuerstia marisgermanicae gen. nov., sp. nov., an Unusual Member of the Phylum Planctomycetes from the German Wadden Sea
Cited by: 49
Author(s): Timo Kohn, Anja Heuer, Mareike Jogler, John Vollmers, Christian Boedeker, Boyke Bunk, Patrick Rast, Daniela Borchert, Ines Glöckner, Heike M. Freese, Hans‐Peter Klenk, Jörg Overmann, Anne‐Kristin Kaster, Manfred Rohde, Sandra Wiegand, Christian Jogler
Software Mentions: 5
Published: almost 8 years ago

10.1038/s41598-020-69607-6

Great apes selectively retrieve relevant memories to guide action
Cited by: 8
Author(s): Katarzyna Bobrowicz, Mikael Johansson, Mathias Osvath
Software Mentions: 5
Published: over 4 years ago

10.3390/foods10061331

Chemoprotective Effects of Xanthohumol against the Carcinogenic Mycotoxin Aflatoxin B1
Cited by: 15
Author(s): Alja Štern, Veronika Furlan, Matjaž Novak, Martina Štampar, Zala Kolenc, Katarina Kores, Metka Filipič, Urban Bren, Bojana Žegura
Software Mentions: 5
Published: over 3 years ago

10.7554/eLife.09347

A pH-driven transition of the cytoplasm from a fluid- to a solid-like state promotes entry into dormancy
Cited by: 332
Author(s): Matthias C. Munder, Daniel Midtvedt, Titus M. Franzmann, Elisabeth Nüske, Oliver Otto, Maik Herbig, Elke Ulbricht, Paul Müller, Anna Taubenberger, Shovamayee Maharana, Liliana Malinovska, Doris Richter, Jochen Guck, Vasily Zaburdaev, Simon Alberti
Software Mentions: 5
Published: almost 9 years ago

10.3389/fmicb.2019.01768

Shear Stress as a Major Driver of Marine Biofilm Communities in the NW Mediterranean Sea
Cited by: 30
Author(s): Elisa Caldeira Pires Catão, Thomas V. Pollet, Benjamin Misson, Cédric Garnier, Jean-François Ghiglione, Raphaëlle Barry‐Martinet, Marine Maintenay, Christine Bressy, Jean‐François Briand
Software Mentions: 5
Published: over 5 years ago

10.3389/fphys.2017.00661

The Gly16 Allele of the G16R Single Nucleotide Polymorphism in the β2-Adrenergic Receptor Gene Augments the Glycemic Response to Adrenaline in Humans
Cited by: 6
Author(s): Kim Zillo Rokamp, Jonatan Myrup Staalsø, Morten Zaar, P Rasmussen, Lonnie G. Petersen, Rikke Vibeke Nielsen, Niels H. Secher, Niels Vidiendal Olsen, Henning Bay Nielsen
Software Mentions: 5
Published: over 7 years ago

10.3389/fpls.2020.00948

Systematic Review of Plant Ribosome Heterogeneity and Specialization
Cited by: 49
Author(s): Federico Martinez‐Seidel, Olga Beine-Golovchuk, Yin-Chen Hsieh, Joachim Kopka
Software Mentions: 5
Published: over 4 years ago