Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0236135

https://doi.org/10.1371/journal.pone.0236135

Fungi, bacteria and oomycota opportunistically isolated from the seagrass, Zostera marina

Cited by: 25
Author(s): Cassandra L. Ettinger, Jonathan A. Eisen
Published: over 4 years ago

Software Mentions 12

bioconductor: ggtree
an R package for visualization of tree and annotation data
Papers that mentioned: 474
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
bioconductor: treeio
Base Classes and Functions for Phylogenetic Tree Input and Output
Papers that mentioned: 32
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: patchwork
The Composer of Plots
Papers that mentioned: 38
cran: reshape
Flexibly Reshape Data
Papers that mentioned: 123
cran: tidyverse
Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023
pypi: PACE
Data Quality of Experimental Data
Papers that mentioned: 13,779
pypi: patchwork
Deployment/sysadmin operations, powered by Fabric
Papers that mentioned: 38
pypi: reshape
The missing reshape for Python
Papers that mentioned: 123
pypi: treeio
A pure python parser for tree data format IO
Papers that mentioned: 32