cran: patchwork | Projects | Ecosyste.ms: Papers

10.1038/s41598-020-76683-1

Revisiting potential associations between brain morphology, fear acquisition and extinction through new data and a literature review
Cited by: 7
Author(s): Mana R. Ehlers, Janne Nold, Manuel Kuhn, Maren Klingelhöfer-Jens, Tina B. Lonsdorf
Software Mentions: 44
Published: about 4 years ago

10.1016/j.xcrm.2020.100096

Treatment with Commonly Used Antiretroviral Drugs Induces a Type I/III Interferon Signature in the Gut in the Absence of HIV Infection
Cited by: 11
Author(s): Sean M. Hughes, Claire Levy, Fernanda Calienes, Joanne D. Stekler, Urvashi Pandey, Lucia Vojtech, Alicia R. Berard, Kenzie Birse, Laura Noël‐Romas, Brian Richardson, Jackelyn B. Golden, Michael Cartwright, Ann C. Collier, Claire E. Stevens, Marcel E. Curlin, Timothy H. Holtz, Nelly Mugo, Elizabeth Irungu, Elly Katabira, Timothy Muwonge, Javier R. Lama, Jared M. Baeten, Adam Burgener, Jairam R. Lingappa, M. Juliana McElrath, Romel D. Mackelprang, Ian McGowan, Ross D. Cranston, Mark J. Cameron, Florian Hladik
Software Mentions: 21
Published: over 4 years ago

10.1371/journal.pone.0239842

A spatiotemporal comparison of length-at-age in the coral reef fish Acanthurus nigrofuscus between marine reserves and fished reefs
Cited by: 1
Author(s): Mathias T. Cramer, Robert Y. Fidler, Louis Penrod, Jessica Carroll, Ralph G. Turingan
Software Mentions: 20
Published: about 4 years ago

10.1111/eva.13237

A machine learning approach to integrating genetic and ecological data in tsetse flies ( <i>Glossina pallidipes</i> ) for spatially explicit vector control planning
Cited by: 5
Author(s): Anusha P Bishop, Giuseppe Amatulli, Chaz Hyseni, Evlyn Pless, Rosemary Bateta, Winnie A. Okeyo, Paul O. Mireji, Sylvance Okoth, Imna Malele, Grace Murilla, Serap Aksoy, Adalgisa Caccone, Norah P. Saarman
Software Mentions: 18
Published: over 3 years ago

10.1002/eap.1898

Spatiotemporal prediction of wildfire size extremes with Bayesian finite sample maxima
Cited by: 40
Author(s): Maxwell B. Joseph, Matthew W. Rossi, Nathan Mietkiewicz, Adam L. Mahood, Megan E. Cattau, Lise A. St. Denis, R. Chelsea Nagy, Virginia Iglesias, John T. Abatzoglou, Jennifer K. Balch
Software Mentions: 17
Published: over 5 years ago

10.3389/fpsyg.2021.627561

Automatic Facial Expression Recognition in Standardized and Non-standardized Emotional Expressions
Cited by: 41
Author(s): Theresa Küntzler, T. Tim A. Höfling, Georg W. Alpers
Software Mentions: 16
Published: over 3 years ago

10.3389/fpls.2021.618028

Floral UV Features of Plant Species From a Neotropical Savanna
Cited by: 6
Author(s): Priscila Tunes, Maria Gabriela Gutierrez Camargo, Elza Guimarães
Software Mentions: 15
Published: over 3 years ago

10.3390/cells10061292

Effect of Differences in the Microbiome of Cyp17a1-Deficient Mice on Atherosclerotic Background
Cited by: 1
Author(s): Axel Künstner, Rédouane Aherrahrou, Misa Hirose, Petra Bruse, Saleh M. Ibrahim, Hauke Busch, Jeanette Erdmann, Zouhair Aherrahrou
Software Mentions: 15
Published: over 3 years ago

10.3389/fmicb.2020.02033

Plasmid Interactions Can Improve Plasmid Persistence in Bacterial Populations
Cited by: 24
Author(s): João Alves Gama, Rita Zilhão, Francisco Dionísio
Software Mentions: 13
Published: over 4 years ago

10.3390/ijms22062790

Differential Methylation in the GSTT1 Regulatory Region in Sudden Unexplained Death and Sudden Unexpected Death in Epilepsy
Cited by: 4
Author(s): Steffan Noe Christiansen, Stine Jacobsen, Jeppe Dyrberg Andersen, Marie-Louise Kampmann, Linea C Trudsø, Karsten Olsen, Jacob Tfelt-Hansen, Jytte Banner, Niels Morling
Software Mentions: 13
Published: almost 4 years ago

10.1371/journal.pcbi.1008896

Multilevel selection favors fragmentation modes that maintain cooperative interactions in multispecies communities
Cited by: 8
Author(s): Gil J. B. Henriques, Simon van Vliet, Michael Doebeli
Software Mentions: 13
Published: over 3 years ago

10.1038/s41598-020-78747-8

Non-invasive assessment of skeletal muscle fibrosis in mice using nuclear magnetic resonance imaging and ultrasound shear wave elastography
Cited by: 6
Author(s): Aurea B. Martins-Bach, Damien Bachasson, E. Araujo, Lucas Soustelle, Paulo Loureiro de Sousa, Y. Fromes, Pierre Carlier
Software Mentions: 13
Published: almost 4 years ago

10.1038/s42003-021-01842-7

Cell-autonomous immune gene expression is repressed in pulmonary neuroendocrine cells and small cell lung cancer
Cited by: 35
Author(s): Ling Cai, Hongyu Liu, Fang Huang, Junya Fujimoto, Luc Girard, Jun Chen, Yongwen Li, Yu An Zhang, Dhruba Deb, Victor Stastny, Karine Pozo, Christin S. Kuo, Gaoxiang Jia, Chendong Yang, Wei Zou, Adeeb Alomar, Kenneth E. Huffman, Mahboubeh Papari-Zareei, Lin Yang, Benjamin J. Drapkin, Esra A. Akbay, David S. Shames, Ignacio I. Wistuba, Tao Wang, Jane E. Johnson, Guanghua Xiao, Ralph J. DeBerardinis, John D. Minna, Yang Xie, Adi F. Gazdar
Software Mentions: 13
Published: almost 4 years ago

10.1186/s12859-021-04178-5

WEScover: selection between clinical whole exome sequencing and gene panel testing
Cited by: 3
Author(s): In-Hee Lee, Yufei Lin, William Jefferson Alvarez, Carles Hernández-Ferrer, Kenneth D. Mandl, Sek Won Kong
Software Mentions: 12
Published: over 3 years ago

10.1186/s13567-021-00981-3

Immunogenicity and protective efficacy of a Streptococcus suis vaccine composed of six conserved immunogens
Cited by: 8
Author(s): Christine Weiße, Denise Dittmar, Beata Jakóbczak, Volker Florian, Nicole Schütze, Gottfried Alber, Kristin Klose, Stephan Michalik, Peter Valentin‐Weigand, Uwe Völker, Christoph Georg Baums
Software Mentions: 12
Published: over 3 years ago

10.1371/journal.pone.0236135

Fungi, bacteria and oomycota opportunistically isolated from the seagrass, Zostera marina
Cited by: 25
Author(s): Cassandra L. Ettinger, Jonathan A. Eisen
Software Mentions: 12
Published: over 4 years ago

10.1093/molbev/msab091

Piggybacking on Niche Adaptation Improves the Maintenance of Multidrug-Resistance Plasmids
Cited by: 20
Author(s): Julia Maria Kloos, João Alves Gama, Joachim Hegstad, Ørjan Samuelsen, Pål Jarle Johnsen
Software Mentions: 11
Published: over 3 years ago

10.1016/j.isci.2021.102768

Spatially resolved sampling for untargeted metabolomics: A new tool for salivomics
Cited by: 4
Author(s): Alessio Ciurli, Maximiliam Liebl, Rico Derks, Jacques Neefjes, Martin Giera
Software Mentions: 10
Published: over 3 years ago

10.1038/s42003-021-02407-4

Social familiarity improves fast-start escape performance in schooling fish
Cited by: 8
Author(s): Lauren E. Nadler, Mark I. McCormick, Jacob L. Johansen, Paolo Domenici
Software Mentions: 10
Published: over 3 years ago

10.2196/27163

Variation of Daily Care Demand in Swiss General Hospitals: Longitudinal Study on Capacity Utilization, Patient Turnover and Clinical Complexity Levels
Cited by: 5
Author(s): Narayan Sharma, René Schwendimann, Olga Endrich, Dietmar Ausserhofer, Michaël Simon
Software Mentions: 9
Published: over 3 years ago

10.1186/s40168-021-01089-8

Remodeling of the maternal gut microbiome during pregnancy is shaped by parity
Cited by: 28
Author(s): Alexander S. F. Berry, Meghann K. Pierdon, Ana M. Misic, Megan C. Sullivan, Kevin T. O’Brien, Ying Chen, Samuel Murray, Lydia A. Ramharack, Robert N. Baldassano, Thomas D. Parsons, Daniel P. Beiting
Software Mentions: 9
Published: over 3 years ago

10.1128/mSystems.00493-20

Exometabolite Dynamics over Stationary Phase Reveal Strain-Specific Responses
Cited by: 3
Author(s): John L. Chodkowski, Ashley Shade
Software Mentions: 9
Published: almost 4 years ago

10.7554/eLife.60122

Quantifying antibody kinetics and RNA detection during early-phase SARS-CoV-2 infection by time since symptom onset
Cited by: 68
Author(s): Benny Borremans, Amandine Gamble, Katherine C. Prager, Sarah K Helman, Abby M. McClain, Caitlin Cox, Van Savage, James O. Lloyd‐Smith
Software Mentions: 8
Published: over 4 years ago

10.1101/2020.12.03.20242032

Cortical Mechanisms of Visual Hypersensitivity in Women at Risk for Chronic Pelvic Pain
Cited by: 0
Author(s): Matthew J. Kmiecik, Frank F. Tu, Rebecca L. Silton, Katlyn E Dillane, Genevieve E. Roth, Steven E. Harte, Kevin M. Hellman
Software Mentions: 8
Published: about 4 years ago

10.3390/microorganisms9071454

First Evidence That Nematode Communities in Deadwood Are Related to Tree Species Identity and to Co-Occurring Fungi and Prokaryotes
Cited by: 8
Author(s): Julia Moll, Friederike Roy, Claus Bässler, Jacob Heilmann‐Clausen, Martin Hofrichter, Harald Kellner, Doris Krabel, Jan Henrik Schmidt, François Buscot, Björn Hoppe
Software Mentions: 8
Published: over 3 years ago

10.7717/peerj.11916

The composition, geography, biology and assembly of the coastal flora of the Cape Floristic Region
Cited by: 5
Author(s): B. Adriaan Grobler, Richard M. Cowling
Software Mentions: 8
Published: over 3 years ago

10.34133/2020/3074916

RhizoVision Crown: An Integrated Hardware and Software Platform for Root Crown Phenotyping
Cited by: 65
Author(s): Anand Seethepalli, Haichao Guo, Xiuwei Liu, Marcus Griffiths, Hussien Almtarfi, Zenglu Li, Shuyu Liu, Alina Zare, Felix B. Fritschi, Elison B. Blancaflor, Xuefeng Ma, Larry M. York
Software Mentions: 8
Published: almost 5 years ago

10.1371/journal.pone.0256210

Intolerance of uncertainty and decisions about delayed, probabilistic rewards: A replication and extension of Luhmann, C. C., Ishida, K., & Hajcak, G. (2011)
Cited by: 1
Author(s): Luís F. Ciria, María J. Quintero, Francisco J. López, David Luque, Pedro L. Cobos, Joaquín Morís
Software Mentions: 8
Published: about 3 years ago

10.3389/fpsyt.2021.668297

Estimating the Prevalence and Genetic Risk Mechanisms of ARFID in a Large Autism Cohort
Cited by: 26
Author(s): Tanner Koomar, Taylor Thomas, Natalie R. Pottschmidt, Michael Lutter, Jacob J. Michaelson
Software Mentions: 7
Published: over 3 years ago

10.1128/mSphere.00670-20

Natural Infection with <i>Giardia</i> Is Associated with Altered Community Structure of the Human and Canine Gut Microbiome
Cited by: 26
Author(s): Alexander S. F. Berry, Keegan S. Johnson, Rene Martins, Megan C. Sullivan, Camila Farias Amorim, Alexandra Putre, Aiysha Scott, Shuai Wang, Brianna Lindsay, Robert N. Baldassano, Thomas J. Nolan, Daniel P. Beiting
Software Mentions: 7
Published: over 4 years ago

10.1186/s13195-021-00768-w

Assessing individual-level change in dementia research: a review of methodologies
Cited by: 4
Author(s): Aja Louise Murray, Marlena Vollmer, Ian J. Deary, Graciela Muñiz‐Terrera, Tom Booth
Software Mentions: 6
Published: almost 4 years ago

10.3390/v13081654

Longitudinal Secretion of Paramyxovirus RNA in the Urine of Straw-Coloured Fruit Bats (Eidolon helvum)
Cited by: 2
Author(s): Elli Rosa Jolma, Louise Gibson, Richard Suu‐Ire, Grace Fleischer, Samuel Asumah, Sylvester Languon, Olivier Restif, James L. N. Wood, Andrew A. Cunningham
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0237881

Identification of key odorants in honeysuckle by headspace-solid phase microextraction and solvent-assisted flavour evaporation with gas chromatography-mass spectrometry and gas chromatograph-olfactometry in combination with chemometrics
Cited by: 6
Author(s): Keran Su, Xin Zhang, Shao-Quan Liu, LiHui Jia, Benjamin Lassabliere, Kim Huey Ee, Aileen Pua, Rui Min Vivian Goh, Jingcan Sun, Bin Yu, XiaoXue Hu
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-021-87414-5

Population structure and genetic diversity of invasive Fall Armyworm after 2 years of introduction in India
Cited by: 22
Author(s): Nishtha Nayyar, R. Gandhi Gracy, TR Ashika, Govindarajan Mohan, R.S. Swathi, M. Mohan, Malvika Chaudhary, N. Bakthavatsalam, T. Venkatesan
Software Mentions: 5
Published: over 3 years ago

10.3390/ph14070602

CPPs to the Test: Effects on Binding, Uptake and Biodistribution of a Tumor Targeting Nanobody
Cited by: 8
Author(s): Estel Collado Camps, Sanne A. M. van Lith, Cathelijne Frielink, Jordi Lankhof, Ingrid Dijkgraaf, Martin Gotthardt, Roland Brock
Software Mentions: 4
Published: over 3 years ago

10.3390/microorganisms9061200

Effects of Dispersants and Biosurfactants on Crude-Oil Biodegradation and Bacterial Community Succession
Cited by: 14
Author(s): Gareth E. Thomas, Jan L. Brant, Pablo Campo, Dave R. Clark, Frédéric Coulon, Benjamin H. Gregson, Terry J. McGenity, Boyd A. McKew
Software Mentions: 3
Published: over 3 years ago

10.1264/jsme2.ME21031

Simple In-liquid Staining of Microbial Cells for Flow Cytometry Quantification of the Microbial Population in Marine Subseafloor Sediments
Cited by: 2
Author(s): Fumiaki Mori, Tomoya Nishimura, Taisuke Wakamatsu, T. Terada, Yuki Morono
Software Mentions: 3
Published: almost 4 years ago

10.1523/ENEURO.0265-18.2018

Carriage of Supernumerary Sex Chromosomes Decreases the Volume and Alters the Shape of Limbic Structures
Cited by: 20
Author(s): Ajay Nadig, Paul K. Reardon, Jakob Seidlitz, Cassidy L. McDermott, Jonathan D. Blumenthal, Liv S. Clasen, François Lalonde, Jason P. Lerch, M. Mallar Chakravarty, Armin Raznahan
Software Mentions: 3
Published: over 6 years ago

Projects: cran: patchwork

Papers Mentioning patchwork 38