Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/s42003-021-01842-7

https://doi.org/10.1038/s42003-021-01842-7

Cited by: 35
Author(s): Ling Cai, Hongyu Liu, Fang Huang, Junya Fujimoto, Luc Girard, Jun Chen, Yongwen Li, Yu An Zhang, Dhruba Deb, Victor Stastny, Karine Pozo, Christin S. Kuo, Gaoxiang Jia, Chendong Yang, Wei Zou, Adeeb Alomar, Kenneth E. Huffman, Mahboubeh Papari-Zareei, Lin Yang, Benjamin J. Drapkin, Esra A. Akbay, David S. Shames, Ignacio I. Wistuba, Tao Wang, Jane E. Johnson, Guanghua Xiao, Ralph J. DeBerardinis, John D. Minna, Yang Xie, Adi F. Gazdar
Published: about 3 years ago

Software Mentions 13

bioconductor: affy
Methods for Affymetrix Oligonucleotide Arrays
Papers that mentioned: 989
bioconductor: fgsea
Fast Gene Set Enrichment Analysis
Papers that mentioned: 150
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: ggpubr
'ggplot2' Based Publication Ready Plots
Papers that mentioned: 856
cran: ggrepel
Automatically Position Non-Overlapping Text Labels with 'ggplot2'
Papers that mentioned: 164
cran: ggridges
Ridgeline Plots in 'ggplot2'
Papers that mentioned: 53
cran: jcolors
Colors Palettes for R and 'ggplot2', Additional Themes for 'ggplot2'
Papers that mentioned: 1
cran: patchwork
The Composer of Plots
Papers that mentioned: 38
cran: phateR
PHATE - Potential of Heat-Diffusion for Affinity-Based Transition Embedding
Papers that mentioned: 4
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
cran: treemap
Treemap Visualization
Papers that mentioned: 31
pypi: patchwork
Deployment/sysadmin operations, powered by Fabric
Papers that mentioned: 38
pypi: treemap
Treemap creator with interactive viewer - now with display of .coverage files
Papers that mentioned: 31