Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: ggridges
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/ggridges
Ridgeline Plots in 'ggplot2'
7 versions
Latest release: about 2 years ago
69 dependent packages
76,537 downloads last month
Papers Mentioning ggridges 53
10.1186/s40462-020-00219-5
No room to roam: King Cobras reduce movement in agricultureCited by: 27
Author(s): Benjamin Michael Marshall, Matt Crane, Inês Silva, Colin Thomas Strine, Max Dolton Jones, Cameron Wesley Hodges, Pongthep Suwanwaree, Taksin Artchawakom, Surachit Waengsothorn, Matt Goode
Software Mentions: 31
Published: over 4 years ago
10.1038/s41598-019-54004-5
An Escherichia coli ST131 pangenome atlas reveals population structure and evolution across 4,071 isolatesCited by: 61
Author(s): Arun Gonzales Decano, Tim Downing
Software Mentions: 30
Published: about 5 years ago
10.7717/peerj.11742
Lots of movement, little progress: a review of reptile home range literatureCited by: 19
Author(s): Matthew Crane, Inês Silva, Benjamin Michael Marshall, Colin Thomas Strine
Software Mentions: 21
Published: over 3 years ago
10.7554/eLife.51254
Gene regulatory network reconstruction using single-cell RNA sequencing of barcoded genotypes in diverse environmentsCited by: 102
Author(s): Christopher Jackson, Dayanne M. Castro, Giuseppe-Antonio Saldi, Richard Bonneau, David Gresham
Software Mentions: 20
Published: almost 5 years ago
10.3389/fvets.2021.620327
Detection of Mycobacterium avium ssp. paratuberculosis in Cultures From Fecal and Tissue Samples Using VOC Analysis and Machine Learning ToolsCited by: 6
Author(s): Philipp Vitense, Elisa Kasbohm, Anne Klassen, Peter Gierschner, Phillip Trefz, M. Weber, Wolfram Miekisch, Jochen K. Schubert, Petra Möbius, Petra Reinhold, Volkmar Liebscher, Heike Köhler
Software Mentions: 17
Published: almost 4 years ago
10.1371/journal.pone.0219892
Quantification and isolation of Bacillus subtilis spores using cell sorting and automated gatingCited by: 18
Author(s): Marianna Karava, Felix Bracharz, Johannes Kabisch
Software Mentions: 15
Published: over 5 years ago
10.1038/s42003-021-01842-7
Cell-autonomous immune gene expression is repressed in pulmonary neuroendocrine cells and small cell lung cancerCited by: 35
Author(s): Ling Cai, Hongyu Liu, Fang Huang, Junya Fujimoto, Luc Girard, Jun Chen, Yongwen Li, Yu An Zhang, Dhruba Deb, Victor Stastny, Karine Pozo, Christin S. Kuo, Gaoxiang Jia, Chendong Yang, Wei Zou, Adeeb Alomar, Kenneth E. Huffman, Mahboubeh Papari-Zareei, Lin Yang, Benjamin J. Drapkin, Esra A. Akbay, David S. Shames, Ignacio I. Wistuba, Tao Wang, Jane E. Johnson, Guanghua Xiao, Ralph J. DeBerardinis, John D. Minna, Yang Xie, Adi F. Gazdar
Software Mentions: 13
Published: almost 4 years ago
10.1371/journal.pgen.1009291
Increased virulence of Puccinia coronata f. sp.avenae populations through allele frequency changes at multiple putative Avr lociCited by: 30
Author(s): Marisa E. Miller, Eric S. Nazareno, Susan M. Rottschaefer, Jakob Riddle, Daniel A. Pereira, Feng Li, Hoa Nguyen-Phuc, Eva C Henningsen, Antoine Persoons, Diane G. O. Saunders, Eva H. Stukenbrock, Peter N. Dodds, Shahryar F. Kianian, Melania Figueroa
Software Mentions: 13
Published: almost 4 years ago
10.3389/fnut.2021.642612
The Association of Meat Intake With All-Cause Mortality and Acute Myocardial Infarction Is Age-Dependent in Patients With Stable Angina PectorisCited by: 2
Author(s): Åslaug Oddsdatter Matre, Anthea Van Parys, Trond E. Olsen, Teresa Haugsgjerd, Carl Michael Baravelli, Ottar Nygård, Jutta Dierkes, Vegard Lysne
Software Mentions: 12
Published: almost 4 years ago
10.1371/journal.pone.0238835
Analyzing the fine structure of distributionsCited by: 35
Author(s): Michael C. Thrun, Tino Gehlert, Alfred Ultsch
Software Mentions: 12
Published: about 4 years ago
10.1099/mgen.0.000503
Rapid molecular evolution of Spiroplasma symbionts of DrosophilaCited by: 13
Author(s): Michael Gerth, Humberto Martínez-Montoya, Paulino Ramirez, Florent Masson, Joanne S. Griffin, Rodolfo Aramayo, Stefanos Siozios, Bruno Lemaître, Mariana Mateos, Gregory D. D. Hurst
Software Mentions: 11
Published: almost 4 years ago
10.7554/eLife.65372
Image3C, a multimodal image-based and label-independent integrative method for single-cell analysisCited by: 6
Author(s): Alice Accorsi, Andrew Box, Robert Peuß, Christopher J. Wood, Alejandro Sánchez Alvarado, Nicolas Rohner
Software Mentions: 11
Published: over 3 years ago
10.3389/fneur.2021.683051
An Externally Validated Dynamic Nomogram for Predicting Unfavorable Prognosis in Patients With Aneurysmal Subarachnoid HemorrhageCited by: 8
Author(s): Ping Hu, Yang Xu, Yangfan Liu, Yuntao Li, Liguo Ye, Si Zhang, Xinyi Zhu, Yangzhi Qi, Huikai Zhang, Qian Sun, Yixuan Wang, Gang Deng, Qianxue Chen
Software Mentions: 10
Published: over 3 years ago
10.1002/ece3.6594
A total crapshoot? Evaluating bioinformatic decisions in animal diet metabarcoding analysesCited by: 36
Author(s): Devon O’Rourke, Nicholas A. Bokulich, Michelle A. Jusino, Matthew D. MacManes, Jeffrey T. Foster
Software Mentions: 10
Published: over 4 years ago
10.7717/peerj.7720
Estimating flowering transition dates from status-based phenological observations: a test of methodsCited by: 11
Author(s): Shawn D. Taylor
Software Mentions: 9
Published: over 5 years ago
10.1093/molbev/msaa266
Genomic Adaptations to Salinity Resist Gene Flow in the Evolution of Floridian WatersnakesCited by: 10
Author(s): Rhett M. Rautsaw, Tristan D. Schramer, Rachel Acuña, Lindsay N Arick, Mark DiMeo, Kathryn P. Mercier, Michael Schrum, Andrew J. Mason, Mark J. Margres, Jason L. Strickland, Christopher L. Parkinson
Software Mentions: 9
Published: about 4 years ago
10.1186/s41065-021-00196-8
Dynamic co-expression modular network analysis in nonalcoholic fatty liver diseaseCited by: 4
Author(s): Jing Zheng, WU Hui-zhong, Zhiying Zhang, Songqiang Yao
Software Mentions: 9
Published: over 3 years ago
10.1371/journal.pone.0242826
Can post-capture photographic identification as a wildlife marking technique be undermined by observer error? A case study using King Cobras in northeast ThailandCited by: 0
Author(s): Max Dolton Jones, Benjamin Michael Marshall, Samantha Nicole Smith, Jack Taylor Christie, Surachit Waengsothorn, Taksin Artchawakom, Pongthep Suwanwaree, Colin Thomas Strine
Software Mentions: 9
Published: about 4 years ago
10.7554/eLife.60122
Quantifying antibody kinetics and RNA detection during early-phase SARS-CoV-2 infection by time since symptom onsetCited by: 68
Author(s): Benny Borremans, Amandine Gamble, Katherine C. Prager, Sarah K Helman, Abby M. McClain, Caitlin Cox, Van Savage, James O. Lloyd‐Smith
Software Mentions: 8
Published: over 4 years ago
10.7554/eLife.54818
A single-cell survey of Drosophila bloodCited by: 109
Author(s): Sudhir Gopal Tattikota, Bumsik Cho, Yifang Liu, Yanhui Hu, Víctor Barrera, Michael J. Steinbaugh, Sangtae Yoon, Aram Comjean, Fangge Li, Franz Dervis, Ruei-Jiun Hung, Jin Wu Nam, Shannan Ho Sui, Jiwon Shim, Norbert Perrimon
Software Mentions: 8
Published: over 4 years ago
10.1186/s13059-021-02309-y
Deep sequencing of pre-translational mRNPs reveals hidden flux through evolutionarily conserved alternative splicing nonsense-mediated decay pathwaysCited by: 11
Author(s): Carrie Kovalak, Scott Donovan, Alicia A. Bicknell, Mihir Metkar, Melissa J. Moore
Software Mentions: 7
Published: over 3 years ago
10.1523/ENEURO.0286-20.2020
Molecular Diversity of Glutamatergic and GABAergic Synapses from Multiplexed Fluorescence ImagingCited by: 7
Author(s): Eric Danielson, Karen Perez de Arce, Beth A. Cimini, Eike‐Christian Wamhoff, Shantanu Singh, Jeffrey R. Cottrell, Anne E. Carpenter, Mark Bathe
Software Mentions: 6
Published: about 4 years ago
10.1001/jamanetworkopen.2021.8075
Assessment of Overuse of Medical Tests and Treatments at US Hospitals Using Medicare ClaimsCited by: 21
Author(s): Kelsey Chalmers, Philip E. Smith, Judith A. Garber, Valérie Gopinath, Shannon Brownlee, Allen D. Schwartz, Adam G Elshaug, Vikas Saini
Software Mentions: 6
Published: over 3 years ago
10.1038/s41598-020-69635-2
Rapid fragmentation of microplastics by the freshwater amphipod Gammarus duebeni (Lillj.)Cited by: 91
Author(s): Alicia Mateos-Cárdenas, John O’Halloran, Frank N.A.M. van Pelt, Marcel A. K. Jansen
Software Mentions: 6
Published: over 4 years ago
10.7554/eLife.61909
Real-time, low-latency closed-loop feedback using markerless posture trackingCited by: 78
Author(s): Gary A Kane, Gonçalo Lopes, Jonny L. Saunders, Alexander Mathis
Software Mentions: 6
Published: about 4 years ago
10.1002/jrsm.1444
<scp>IPDmada</scp> : An R Shiny tool for analyzing and visualizing individual patient data meta‐analyses of diagnostic test accuracyCited by: 7
Author(s): Junfeng Wang, Willem R. Keusters, Lingzi Wen, Mariska Leeflang
Software Mentions: 5
Published: over 4 years ago
10.7554/eLife.56029
Recent shifts in the genomic ancestry of Mexican Americans may alter the genetic architecture of biomedical traitsCited by: 14
Author(s): Melissa L. Spear, Alex Diaz-Papkovich, Elad Ziv, Joseph Yracheta, Simon Gravel, Dara G. Torgerson, Ryan D. Hernández
Software Mentions: 5
Published: almost 4 years ago
10.1128/mBio.02945-19
Universal Dermal Microbiome in Human SkinCited by: 67
Author(s): Lene Bay, Christopher J. Barnes, Blaine Gabriel Fritz, Jonathan Thorsen, Marlene Elise Møller Restrup, L. Rasmussen, Johan Kløvgaard Sørensen, Anne Brun Hesselvig, Anders Odgaard, Anders J. Hansen, Thomas Bjarnsholt
Software Mentions: 5
Published: almost 5 years ago
10.1111/evo.13754
The comparative biogeography of Philippine geckos challenges predictions from a paradigm of climate‐driven vicariant diversification across an island archipelagoCited by: 20
Author(s): Jamie R. Oaks, Cameron D. Siler, Rafe M. Brown
Software Mentions: 5
Published: over 5 years ago
10.1038/s41598-021-86135-z
Analysis of the response of the cell membrane of Saccharomyces cerevisiae during the detoxification of common lignocellulosic inhibitorsCited by: 10
Author(s): Pau Cabañeros López, Chuantao Peng, Nils Arneborg, Helena Junicke, Krist V. Gernaey
Software Mentions: 5
Published: almost 4 years ago
10.3389/fphys.2021.698463
Integrating External and Internal Load for Monitoring Fitness and Fatigue Status in Standard Microcycles in Elite Rink HockeyCited by: 3
Author(s): Daniel Fernández, David Moya Malapeira, Joan A. Cadefau, Gerard Carmona
Software Mentions: 4
Published: over 3 years ago
10.1080/21642850.2019.1646136
Visualisation and network analysis of physical activity and its determinants: Demonstrating opportunities in analysing baseline associations in the Let’s Move It trialCited by: 9
Author(s): Matti Toivo Juhani Heino, Keegan Knittle, Eiko I. Fried, Reijo Sund, Ari Haukkala, Katja Borodulin, Antti Uutela, Vera Araújo-Soares, Tommi Vasankari, Nelli Hankonen
Software Mentions: 4
Published: almost 6 years ago
10.1038/s41598-020-66601-w
Development of a new ‘ultrametric’ method for assessing spawning progression in female teleost serial spawnersCited by: 9
Author(s): Kling L. Anderson, Maud Alix, Katerina Charitonidou, Anders Thorsén, Grethe Thorsheim, Konstantinos Ganias, Thassya Christina dos Santos Schmidt, Olav Sigurd Kjesbu
Software Mentions: 4
Published: over 4 years ago
10.1186/s11689-018-9248-7
Characterization of autism spectrum disorder and neurodevelopmental profiles in youth with XYY syndromeCited by: 21
Author(s): Lisa Joseph, Cristan Farmer, Colby Chlebowski, Laura Henry, Ari M. Fish, Catherine Mankiw, Anastasia Xenophontos, Liv S. Clasen, Bethany Sauls, Jakob Seidlitz, Jonathan D. Blumenthal, Erin Torres, Audrey Thurm, Armin Raznahan
Software Mentions: 4
Published: about 6 years ago
10.1186/s12864-021-07494-5
Genome-wide analysis of spatiotemporal expression patterns during rice leaf developmentCited by: 2
Author(s): Masayuki Miya, Takanori Yoshikawa, Yutaka Satō, Jun-Ichi Itoh
Software Mentions: 4
Published: almost 4 years ago
10.1093/sysbio/syy063
Full Bayesian Comparative Phylogeography from Genomic DataCited by: 37
Author(s): Jamie R. Oaks
Software Mentions: 3
Published: over 6 years ago
10.1002/jmd2.12133
Onset of psychiatric signs and impaired neurocognitive domains in inherited metabolic disorders: A case seriesCited by: 0
Author(s): François Medjkane, Marine Bohet, Marielle Ister, David Cohen, Aesa Parenti, Majda Janati, Karine Mention, Dries Dobbelaere, Renaud Jardri
Software Mentions: 3
Published: almost 4 years ago
10.3390/foods10071592
Impact of Global Climate Change on the European Barley Market Requires Novel Multi-Method Approaches to Preserve Crop Quality and AuthenticityCited by: 4
Author(s): Stefan G. Bindereif, Felix Rüll, Peter Kolb, Lucas Köberle, Holger Willms, Simon Steidele, Stephan Schwarzinger, Gerhard Gebauer
Software Mentions: 3
Published: over 3 years ago
10.7717/peerj.7043
Resilience of BST-2/Tetherin structure to single amino acid substitutionsCited by: 2
Author(s): Ian R. Roy, Camden K. Sutton, Christopher E. Berndsen
Software Mentions: 3
Published: over 5 years ago
10.7717/peerj.5428
The Oyster River Protocol: a multi-assembler and kmer approach for de novo transcriptome assemblyCited by: 74
Author(s): Matthew D. MacManes
Software Mentions: 3
Published: over 6 years ago
10.1038/s41598-021-97767-6
Tetraploids expanded beyond the mountain niche of their diploid ancestors in the mixed-ploidy grass Festuca amethystina L.Cited by: 9
Author(s): Marcin Kiedrzyński, Katarzyna M. Zielińska, Iwona Jędrzejczyk, Edyta Kiedrzyńska, Przemysław Piotr Tomczyk, Agnieszka Rewicz, Monika Rewers, Adrian Indreica, Iryna Bednarska, Владимир Ступар, Jan Roleček, Petr Šmarda
Software Mentions: 3
Published: over 3 years ago
10.7554/eLife.55619
The effect of climate change on yellow fever disease burden in AfricaCited by: 26
Author(s): Katy A. M. Gaythorpe, Arran Hamlet, Laurence Cibrelus, Tini Garske, Neil Ferguson
Software Mentions: 2
Published: over 4 years ago
10.3389/fphys.2019.00478
Cardiac Baroreflex, HRV, and Statistics: An Interdisciplinary Approach in HypertensionCited by: 13
Author(s): Nadia Solaro, Mara Malacarne, Massimo Pagani, Daniela Lucini
Software Mentions: 2
Published: over 5 years ago
10.1002/ece3.7277
How environmental stressors affect reproductive potential in a saltmarsh plant species <i>Plantago maritima</i>Cited by: 1
Author(s): Magdalena Lazarus, J. Mazur, Katarzyna Wszałek-Rożek, Adrian Zwolicki
Software Mentions: 2
Published: almost 4 years ago
10.3389/fpls.2021.649694
In planta Activity of Novel Copper(II)-Based Formulations to Inhibit the Esca-Associated Fungus Phaeoacremonium minimum in Grapevine Propagation MaterialCited by: 9
Author(s): Enrico Battiston, Stéphane Compant, Livio Antonielli, Vincenzo Mondello, Christophe Clément, Andrea Simoni, Stefano Di Marco, Laura Mugnai, Florence Fontaine
Software Mentions: 2
Published: almost 4 years ago
10.1242/dev.199430
Single-cell morphometrics reveals ancestral principles of notochord developmentCited by: 19
Author(s): Toby G. R. Andrews, Wolfram Pönisch, Ewa K. Paluch, Benjamin Steventon, Èlia Benito‐Gutiérrez
Software Mentions: 2
Published: over 3 years ago
10.1534/genetics.120.303378
Systematic Humanization of the Yeast Cytoskeleton Discerns Functionally Replaceable from Divergent Human GenesCited by: 12
Author(s): Riddhiman K. Garge, Jon M Laurent, Aashiq H. Kachroo, Edward M. Marcotte
Software Mentions: 2
Published: over 4 years ago
10.1186/s12889-019-7018-4
Urban-rural-specific trend in prevalence of general and central obesity, and association with hypertension in Chinese adults, aged 18–65 yearsCited by: 41
Author(s): Chi Shen, Zhongliang Zhou, Sha Lai, Xingxing Tao, Dantong Zhao, Wanyue Dong, Dan Li, Lan X, Jianmin Gao
Software Mentions: 2
Published: over 5 years ago
10.1186/s12909-020-02317-9
How and why do French medical students choose the specialty of infectious and tropical diseases? A national cross-sectional studyCited by: 8
Author(s): Nathan Peiffer-Smadja, François-Daniel Ardellier, P. Thill, Anne-Lise Beaumont, Gaud Catho, Lindsay Osei, Vincent Dubée, Alexandre Bleibtreu, Adrien Lemaignen, Michaël Thy
Software Mentions: 2
Published: about 4 years ago
10.3389/fspor.2021.702743
The Role of Upper Body Biomechanics in Elite RacewalkersCited by: 2
Author(s): Helen Gravestock, Catherine B. Tucker, Brian Hanley
Software Mentions: 1
Published: over 3 years ago
10.3390/genes11121433
Eco-Evolutionary Feedbacks and the Maintenance of Metacommunity Diversity in a Changing EnvironmentCited by: 5
Author(s): Aidan P. Fielding, Jelena H. Pantel
Software Mentions: 1
Published: about 4 years ago
10.3389/fpubh.2020.00380
Epidemic Changes and Spatio-Temporal Analysis of Japanese Encephalitis in Shaanxi Province, China, 2005–2018Cited by: 4
Author(s): Shuxuan Song, Hong Yao, Zurong Yang, Zhen He, Zhongjun Shao, Kun Liu
Software Mentions: 1
Published: over 4 years ago
10.1186/s12884-019-2415-3
Impact of aging on obstetric outcomes: defining advanced maternal age in BarcelonaCited by: 53
Author(s): Marta Claramonte Nieto, Eva Meler Barrabes, Sandra Garcia Martínez, Mireia Gutiérrez Prat, Bernat Serra Zantop
Software Mentions: 1
Published: over 5 years ago