cran: ggridges | Projects | Ecosyste.ms: Papers

10.1186/s40462-020-00219-5

No room to roam: King Cobras reduce movement in agriculture
Cited by: 27
Author(s): Benjamin Michael Marshall, Matt Crane, Inês Silva, Colin Thomas Strine, Max Dolton Jones, Cameron Wesley Hodges, Pongthep Suwanwaree, Taksin Artchawakom, Surachit Waengsothorn, Matt Goode
Software Mentions: 31
Published: about 4 years ago

10.1038/s41598-019-54004-5

An Escherichia coli ST131 pangenome atlas reveals population structure and evolution across 4,071 isolates
Cited by: 61
Author(s): Arun Gonzales Decano, Tim Downing
Software Mentions: 30
Published: almost 5 years ago

10.7717/peerj.11742

Lots of movement, little progress: a review of reptile home range literature
Cited by: 19
Author(s): Matthew Crane, Inês Silva, Benjamin Michael Marshall, Colin Thomas Strine
Software Mentions: 21
Published: about 3 years ago

10.7554/eLife.51254

Gene regulatory network reconstruction using single-cell RNA sequencing of barcoded genotypes in diverse environments
Cited by: 102
Author(s): Christopher Jackson, Dayanne M. Castro, Giuseppe-Antonio Saldi, Richard Bonneau, David Gresham
Software Mentions: 20
Published: over 4 years ago

10.3389/fvets.2021.620327

Detection of Mycobacterium avium ssp. paratuberculosis in Cultures From Fecal and Tissue Samples Using VOC Analysis and Machine Learning Tools
Cited by: 6
Author(s): Philipp Vitense, Elisa Kasbohm, Anne Klassen, Peter Gierschner, Phillip Trefz, M. Weber, Wolfram Miekisch, Jochen K. Schubert, Petra Möbius, Petra Reinhold, Volkmar Liebscher, Heike Köhler
Software Mentions: 17
Published: over 3 years ago

10.1371/journal.pone.0219892

Quantification and isolation of Bacillus subtilis spores using cell sorting and automated gating
Cited by: 18
Author(s): Marianna Karava, Felix Bracharz, Johannes Kabisch
Software Mentions: 15
Published: about 5 years ago

10.1038/s42003-021-01842-7

Cell-autonomous immune gene expression is repressed in pulmonary neuroendocrine cells and small cell lung cancer
Cited by: 35
Author(s): Ling Cai, Hongyu Liu, Fang Huang, Junya Fujimoto, Luc Girard, Jun Chen, Yongwen Li, Yu An Zhang, Dhruba Deb, Victor Stastny, Karine Pozo, Christin S. Kuo, Gaoxiang Jia, Chendong Yang, Wei Zou, Adeeb Alomar, Kenneth E. Huffman, Mahboubeh Papari-Zareei, Lin Yang, Benjamin J. Drapkin, Esra A. Akbay, David S. Shames, Ignacio I. Wistuba, Tao Wang, Jane E. Johnson, Guanghua Xiao, Ralph J. DeBerardinis, John D. Minna, Yang Xie, Adi F. Gazdar
Software Mentions: 13
Published: over 3 years ago

10.1371/journal.pgen.1009291

Increased virulence of Puccinia coronata f. sp.avenae populations through allele frequency changes at multiple putative Avr loci
Cited by: 30
Author(s): Marisa E. Miller, Eric S. Nazareno, Susan M. Rottschaefer, Jakob Riddle, Daniel A. Pereira, Feng Li, Hoa Nguyen-Phuc, Eva C Henningsen, Antoine Persoons, Diane G. O. Saunders, Eva H. Stukenbrock, Peter N. Dodds, Shahryar F. Kianian, Melania Figueroa
Software Mentions: 13
Published: over 3 years ago

10.3389/fnut.2021.642612

The Association of Meat Intake With All-Cause Mortality and Acute Myocardial Infarction Is Age-Dependent in Patients With Stable Angina Pectoris
Cited by: 2
Author(s): Åslaug Oddsdatter Matre, Anthea Van Parys, Trond E. Olsen, Teresa Haugsgjerd, Carl Michael Baravelli, Ottar Nygård, Jutta Dierkes, Vegard Lysne
Software Mentions: 12
Published: over 3 years ago

10.1371/journal.pone.0238835

Analyzing the fine structure of distributions
Cited by: 35
Author(s): Michael C. Thrun, Tino Gehlert, Alfred Ultsch
Software Mentions: 12
Published: almost 4 years ago

10.1099/mgen.0.000503

Rapid molecular evolution of Spiroplasma symbionts of Drosophila
Cited by: 13
Author(s): Michael Gerth, Humberto Martínez-Montoya, Paulino Ramirez, Florent Masson, Joanne S. Griffin, Rodolfo Aramayo, Stefanos Siozios, Bruno Lemaître, Mariana Mateos, Gregory D. D. Hurst
Software Mentions: 11
Published: over 3 years ago

10.7554/eLife.65372

Image3C, a multimodal image-based and label-independent integrative method for single-cell analysis
Cited by: 6
Author(s): Alice Accorsi, Andrew Box, Robert Peuß, Christopher J. Wood, Alejandro Sánchez Alvarado, Nicolas Rohner
Software Mentions: 11
Published: about 3 years ago

10.3389/fneur.2021.683051

An Externally Validated Dynamic Nomogram for Predicting Unfavorable Prognosis in Patients With Aneurysmal Subarachnoid Hemorrhage
Cited by: 8
Author(s): Ping Hu, Yang Xu, Yangfan Liu, Yuntao Li, Liguo Ye, Si Zhang, Xinyi Zhu, Yangzhi Qi, Huikai Zhang, Qian Sun, Yixuan Wang, Gang Deng, Qianxue Chen
Software Mentions: 10
Published: about 3 years ago

10.1002/ece3.6594

A total crapshoot? Evaluating bioinformatic decisions in animal diet metabarcoding analyses
Cited by: 36
Author(s): Devon O’Rourke, Nicholas A. Bokulich, Michelle A. Jusino, Matthew D. MacManes, Jeffrey T. Foster
Software Mentions: 10
Published: about 4 years ago

10.7717/peerj.7720

Estimating flowering transition dates from status-based phenological observations: a test of methods
Cited by: 11
Author(s): Shawn D. Taylor
Software Mentions: 9
Published: almost 5 years ago

10.1093/molbev/msaa266

Genomic Adaptations to Salinity Resist Gene Flow in the Evolution of Floridian Watersnakes
Cited by: 10
Author(s): Rhett M. Rautsaw, Tristan D. Schramer, Rachel Acuña, Lindsay N Arick, Mark DiMeo, Kathryn P. Mercier, Michael Schrum, Andrew J. Mason, Mark J. Margres, Jason L. Strickland, Christopher L. Parkinson
Software Mentions: 9
Published: almost 4 years ago

10.1186/s41065-021-00196-8

Dynamic co-expression modular network analysis in nonalcoholic fatty liver disease
Cited by: 4
Author(s): Jing Zheng, WU Hui-zhong, Zhiying Zhang, Songqiang Yao
Software Mentions: 9
Published: about 3 years ago

10.1371/journal.pone.0242826

Can post-capture photographic identification as a wildlife marking technique be undermined by observer error? A case study using King Cobras in northeast Thailand
Cited by: 0
Author(s): Max Dolton Jones, Benjamin Michael Marshall, Samantha Nicole Smith, Jack Taylor Christie, Surachit Waengsothorn, Taksin Artchawakom, Pongthep Suwanwaree, Colin Thomas Strine
Software Mentions: 9
Published: almost 4 years ago

10.7554/eLife.60122

Quantifying antibody kinetics and RNA detection during early-phase SARS-CoV-2 infection by time since symptom onset
Cited by: 68
Author(s): Benny Borremans, Amandine Gamble, Katherine C. Prager, Sarah K Helman, Abby M. McClain, Caitlin Cox, Van Savage, James O. Lloyd‐Smith
Software Mentions: 8
Published: about 4 years ago

10.7554/eLife.54818

A single-cell survey of Drosophila blood
Cited by: 109
Author(s): Sudhir Gopal Tattikota, Bumsik Cho, Yifang Liu, Yanhui Hu, Víctor Barrera, Michael J. Steinbaugh, Sangtae Yoon, Aram Comjean, Fangge Li, Franz Dervis, Ruei-Jiun Hung, Jin Wu Nam, Shannan Ho Sui, Jiwon Shim, Norbert Perrimon
Software Mentions: 8
Published: over 4 years ago

10.1186/s13059-021-02309-y

Deep sequencing of pre-translational mRNPs reveals hidden flux through evolutionarily conserved alternative splicing nonsense-mediated decay pathways
Cited by: 11
Author(s): Carrie Kovalak, Scott Donovan, Alicia A. Bicknell, Mihir Metkar, Melissa J. Moore
Software Mentions: 7
Published: over 3 years ago

10.1523/ENEURO.0286-20.2020

Molecular Diversity of Glutamatergic and GABAergic Synapses from Multiplexed Fluorescence Imaging
Cited by: 7
Author(s): Eric Danielson, Karen Perez de Arce, Beth A. Cimini, Eike‐Christian Wamhoff, Shantanu Singh, Jeffrey R. Cottrell, Anne E. Carpenter, Mark Bathe
Software Mentions: 6
Published: over 3 years ago

10.1001/jamanetworkopen.2021.8075

Assessment of Overuse of Medical Tests and Treatments at US Hospitals Using Medicare Claims
Cited by: 21
Author(s): Kelsey Chalmers, Philip E. Smith, Judith A. Garber, Valérie Gopinath, Shannon Brownlee, Allen D. Schwartz, Adam G Elshaug, Vikas Saini
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-020-69635-2

Rapid fragmentation of microplastics by the freshwater amphipod Gammarus duebeni (Lillj.)
Cited by: 91
Author(s): Alicia Mateos-Cárdenas, John O’Halloran, Frank N.A.M. van Pelt, Marcel A. K. Jansen
Software Mentions: 6
Published: about 4 years ago

10.7554/eLife.61909

Real-time, low-latency closed-loop feedback using markerless posture tracking
Cited by: 78
Author(s): Gary A Kane, Gonçalo Lopes, Jonny L. Saunders, Alexander Mathis
Software Mentions: 6
Published: almost 4 years ago

10.1002/jrsm.1444

<scp>IPDmada</scp> : An R Shiny tool for analyzing and visualizing individual patient data meta‐analyses of diagnostic test accuracy
Cited by: 7
Author(s): Junfeng Wang, Willem R. Keusters, Lingzi Wen, Mariska Leeflang
Software Mentions: 5
Published: about 4 years ago

10.7554/eLife.56029

Recent shifts in the genomic ancestry of Mexican Americans may alter the genetic architecture of biomedical traits
Cited by: 14
Author(s): Melissa L. Spear, Alex Diaz-Papkovich, Elad Ziv, Joseph Yracheta, Simon Gravel, Dara G. Torgerson, Ryan D. Hernández
Software Mentions: 5
Published: over 3 years ago

10.1128/mBio.02945-19

Universal Dermal Microbiome in Human Skin
Cited by: 67
Author(s): Lene Bay, Christopher J. Barnes, Blaine Gabriel Fritz, Jonathan Thorsen, Marlene Elise Møller Restrup, L. Rasmussen, Johan Kløvgaard Sørensen, Anne Brun Hesselvig, Anders Odgaard, Anders J. Hansen, Thomas Bjarnsholt
Software Mentions: 5
Published: over 4 years ago

10.1111/evo.13754

The comparative biogeography of Philippine geckos challenges predictions from a paradigm of climate‐driven vicariant diversification across an island archipelago
Cited by: 20
Author(s): Jamie R. Oaks, Cameron D. Siler, Rafe M. Brown
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-86135-z

Analysis of the response of the cell membrane of Saccharomyces cerevisiae during the detoxification of common lignocellulosic inhibitors
Cited by: 10
Author(s): Pau Cabañeros López, Chuantao Peng, Nils Arneborg, Helena Junicke, Krist V. Gernaey
Software Mentions: 5
Published: over 3 years ago

10.3389/fphys.2021.698463

Integrating External and Internal Load for Monitoring Fitness and Fatigue Status in Standard Microcycles in Elite Rink Hockey
Cited by: 3
Author(s): Daniel Fernández, David Moya Malapeira, Joan A. Cadefau, Gerard Carmona
Software Mentions: 4
Published: about 3 years ago

10.1080/21642850.2019.1646136

Visualisation and network analysis of physical activity and its determinants: Demonstrating opportunities in analysing baseline associations in the Let’s Move It trial
Cited by: 9
Author(s): Matti Toivo Juhani Heino, Keegan Knittle, Eiko I. Fried, Reijo Sund, Ari Haukkala, Katja Borodulin, Antti Uutela, Vera Araújo-Soares, Tommi Vasankari, Nelli Hankonen
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-66601-w

Development of a new ‘ultrametric’ method for assessing spawning progression in female teleost serial spawners
Cited by: 9
Author(s): Kling L. Anderson, Maud Alix, Katerina Charitonidou, Anders Thorsén, Grethe Thorsheim, Konstantinos Ganias, Thassya Christina dos Santos Schmidt, Olav Sigurd Kjesbu
Software Mentions: 4
Published: over 4 years ago

10.1186/s11689-018-9248-7

Characterization of autism spectrum disorder and neurodevelopmental profiles in youth with XYY syndrome
Cited by: 21
Author(s): Lisa Joseph, Cristan Farmer, Colby Chlebowski, Laura Henry, Ari M. Fish, Catherine Mankiw, Anastasia Xenophontos, Liv S. Clasen, Bethany Sauls, Jakob Seidlitz, Jonathan D. Blumenthal, Erin Torres, Audrey Thurm, Armin Raznahan
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12864-021-07494-5

Genome-wide analysis of spatiotemporal expression patterns during rice leaf development
Cited by: 2
Author(s): Masayuki Miya, Takanori Yoshikawa, Yutaka Satō, Jun-Ichi Itoh
Software Mentions: 4
Published: over 3 years ago

10.1093/sysbio/syy063

Full Bayesian Comparative Phylogeography from Genomic Data
Cited by: 37
Author(s): Jamie R. Oaks
Software Mentions: 3
Published: about 6 years ago

10.1002/jmd2.12133

Onset of psychiatric signs and impaired neurocognitive domains in inherited metabolic disorders: A case series
Cited by: 0
Author(s): François Medjkane, Marine Bohet, Marielle Ister, David Cohen, Aesa Parenti, Majda Janati, Karine Mention, Dries Dobbelaere, Renaud Jardri
Software Mentions: 3
Published: over 3 years ago

10.3390/foods10071592

Impact of Global Climate Change on the European Barley Market Requires Novel Multi-Method Approaches to Preserve Crop Quality and Authenticity
Cited by: 4
Author(s): Stefan G. Bindereif, Felix Rüll, Peter Kolb, Lucas Köberle, Holger Willms, Simon Steidele, Stephan Schwarzinger, Gerhard Gebauer
Software Mentions: 3
Published: about 3 years ago

10.7717/peerj.7043

Resilience of BST-2/Tetherin structure to single amino acid substitutions
Cited by: 2
Author(s): Ian R. Roy, Camden K. Sutton, Christopher E. Berndsen
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.5428

The Oyster River Protocol: a multi-assembler and kmer approach for de novo transcriptome assembly
Cited by: 74
Author(s): Matthew D. MacManes
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-021-97767-6

Tetraploids expanded beyond the mountain niche of their diploid ancestors in the mixed-ploidy grass Festuca amethystina L.
Cited by: 9
Author(s): Marcin Kiedrzyński, Katarzyna M. Zielińska, Iwona Jędrzejczyk, Edyta Kiedrzyńska, Przemysław Piotr Tomczyk, Agnieszka Rewicz, Monika Rewers, Adrian Indreica, Iryna Bednarska, Владимир Ступар, Jan Roleček, Petr Šmarda
Software Mentions: 3
Published: almost 3 years ago

10.7554/eLife.55619

The effect of climate change on yellow fever disease burden in Africa
Cited by: 26
Author(s): Katy A. M. Gaythorpe, Arran Hamlet, Laurence Cibrelus, Tini Garske, Neil Ferguson
Software Mentions: 2
Published: about 4 years ago

10.3389/fphys.2019.00478

Cardiac Baroreflex, HRV, and Statistics: An Interdisciplinary Approach in Hypertension
Cited by: 13
Author(s): Nadia Solaro, Mara Malacarne, Massimo Pagani, Daniela Lucini
Software Mentions: 2
Published: over 5 years ago

10.1002/ece3.7277

How environmental stressors affect reproductive potential in a saltmarsh plant species <i>Plantago maritima</i>
Cited by: 1
Author(s): Magdalena Lazarus, J. Mazur, Katarzyna Wszałek-Rożek, Adrian Zwolicki
Software Mentions: 2
Published: over 3 years ago

10.3389/fpls.2021.649694

In planta Activity of Novel Copper(II)-Based Formulations to Inhibit the Esca-Associated Fungus Phaeoacremonium minimum in Grapevine Propagation Material
Cited by: 9
Author(s): Enrico Battiston, Stéphane Compant, Livio Antonielli, Vincenzo Mondello, Christophe Clément, Andrea Simoni, Stefano Di Marco, Laura Mugnai, Florence Fontaine
Software Mentions: 2
Published: over 3 years ago

10.1242/dev.199430

Single-cell morphometrics reveals ancestral principles of notochord development
Cited by: 19
Author(s): Toby G. R. Andrews, Wolfram Pönisch, Ewa K. Paluch, Benjamin Steventon, Èlia Benito‐Gutiérrez
Software Mentions: 2
Published: about 3 years ago

10.1534/genetics.120.303378

Systematic Humanization of the Yeast Cytoskeleton Discerns Functionally Replaceable from Divergent Human Genes
Cited by: 12
Author(s): Riddhiman K. Garge, Jon M Laurent, Aashiq H. Kachroo, Edward M. Marcotte
Software Mentions: 2
Published: about 4 years ago

10.1186/s12889-019-7018-4

Urban-rural-specific trend in prevalence of general and central obesity, and association with hypertension in Chinese adults, aged 18–65 years
Cited by: 41
Author(s): Chi Shen, Zhongliang Zhou, Sha Lai, Xingxing Tao, Dantong Zhao, Wanyue Dong, Dan Li, Lan X, Jianmin Gao
Software Mentions: 2
Published: over 5 years ago

10.1186/s12909-020-02317-9

How and why do French medical students choose the specialty of infectious and tropical diseases? A national cross-sectional study
Cited by: 8
Author(s): Nathan Peiffer-Smadja, François-Daniel Ardellier, P. Thill, Anne-Lise Beaumont, Gaud Catho, Lindsay Osei, Vincent Dubée, Alexandre Bleibtreu, Adrien Lemaignen, Michaël Thy
Software Mentions: 2
Published: almost 4 years ago

10.3389/fspor.2021.702743

The Role of Upper Body Biomechanics in Elite Racewalkers
Cited by: 2
Author(s): Helen Gravestock, Catherine B. Tucker, Brian Hanley
Software Mentions: 1
Published: about 3 years ago

10.3390/genes11121433

Eco-Evolutionary Feedbacks and the Maintenance of Metacommunity Diversity in a Changing Environment
Cited by: 5
Author(s): Aidan P. Fielding, Jelena H. Pantel
Software Mentions: 1
Published: almost 4 years ago

10.3389/fpubh.2020.00380

Epidemic Changes and Spatio-Temporal Analysis of Japanese Encephalitis in Shaanxi Province, China, 2005–2018
Cited by: 4
Author(s): Shuxuan Song, Hong Yao, Zurong Yang, Zhen He, Zhongjun Shao, Kun Liu
Software Mentions: 1
Published: about 4 years ago

10.1186/s12884-019-2415-3

Impact of aging on obstetric outcomes: defining advanced maternal age in Barcelona
Cited by: 53
Author(s): Marta Claramonte Nieto, Eva Meler Barrabes, Sandra Garcia Martínez, Mireia Gutiérrez Prat, Bernat Serra Zantop
Software Mentions: 1
Published: almost 5 years ago

Projects: cran: ggridges

Papers Mentioning ggridges 53