Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.51254

https://doi.org/10.7554/eLife.51254

Cited by: 102
Author(s): Christopher Jackson, Dayanne M. Castro, Giuseppe-Antonio Saldi, Richard Bonneau, David Gresham
Published: over 4 years ago

Software Mentions 20

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: scater
Single-Cell Analysis Toolkit for Gene Expression Data in R
Papers that mentioned: 79
cran: cellranger
Translate Spreadsheet Cell Ranges to Rows and Columns
Papers that mentioned: 79
cran: cowplot
Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Papers that mentioned: 298
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: GGally
Extension to 'ggplot2'
Papers that mentioned: 87
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: ggrastr
Rasterize Layers for 'ggplot2'
Papers that mentioned: 4
cran: ggridges
Ridgeline Plots in 'ggplot2'
Papers that mentioned: 53
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
cran: Rmagic
MAGIC - Markov Affinity-Based Graph Imputation of Cells
Papers that mentioned: 6
cran: scales
Scale Functions for Visualization
Papers that mentioned: 104
cran: sctransform
Variance Stabilizing Transformations for Single Cell UMI Data
Papers that mentioned: 34
cran: viridis
Colorblind-Friendly Color Maps for R
Papers that mentioned: 92
pypi: dask
Parallel PyData with Task Scheduling
Papers that mentioned: 8
pypi: generate
Generates new project structures from Jinja templates
Papers that mentioned: 4
pypi: py
library with cross-python path, ini-parsing, io, code, log facilities
Papers that mentioned: 403
pypi: scales
Stats for Python processes
Papers that mentioned: 104
pypi: viridis
Tree data structures and algorithms
Papers that mentioned: 92