Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: viridis
https://packages.ecosyste.ms/registries/pypi.org/packages/viridis
Tree data structures and algorithms
9 versions
Latest release: almost 4 years ago
87 downloads last month
Papers Mentioning viridis 92
10.1016/j.cell.2019.07.038
A Species-Wide Inventory of NLR Genes and Alleles in Arabidopsis thalianaCited by: 237
Author(s): Anna-Lena Van de Weyer, Freddy Monteiro, Oliver J. Furzer, Marc T. Nishimura, Volkan Çevik, Kamil Witek, Jonathan D. G. Jones, Jeffery L. Dangl, Detlef Weigel, Felix Bemm
Software Mentions: 23
Published: over 5 years ago
10.7717/peerj.4278
Forecasting biodiversity in breeding birds using best practicesCited by: 37
Author(s): David J. Harris, Shawn D. Taylor, Ethan P. White
Software Mentions: 21
Published: almost 7 years ago
10.7554/eLife.51254
Gene regulatory network reconstruction using single-cell RNA sequencing of barcoded genotypes in diverse environmentsCited by: 102
Author(s): Christopher Jackson, Dayanne M. Castro, Giuseppe-Antonio Saldi, Richard Bonneau, David Gresham
Software Mentions: 20
Published: almost 5 years ago
10.1186/s12864-020-06832-3
Seamless integration of image and molecular analysis for spatial transcriptomics workflowsCited by: 121
Author(s): Joseph Bergenstråhle, Ludvig Larsson, Joakim Lundeberg
Software Mentions: 20
Published: over 4 years ago
10.1186/s12866-021-02282-3
Associations between the gut microbiome and metabolome in early lifeCited by: 14
Author(s): Quang P. Nguyen, Margaret R. Karagas, Juliette C. Madan, Erika Dade, Thomas J. Palys, Hilary G. Morrison, Wimal Pathmasiri, Susan McRitche, Susan Sumner, H. Robert Frost, Anne G. Hoen
Software Mentions: 19
Published: about 3 years ago
10.15252/emmm.202012640
Mithramycin induces promoter reprogramming and differentiation of rhabdoid tumorCited by: 7
Author(s): Maggie H. Chassé, Benjamin K. Johnson, Elissa A. Boguslawski, Katie M. Sorensen, Jessica E Rosien, Min H. Kang, C. Patrick Reynolds, Lyong Heo, Zachary Madaj, Ian Beddows, Gabrielle E. Foxa, Susan M. Kitchen-Goosen, Bart O. Williams, Timothy J. Triche, Patrick J. Grohar
Software Mentions: 18
Published: almost 4 years ago
10.1016/j.molcel.2021.05.023
Global analysis of protein-RNA interactions in SARS-CoV-2-infected cells reveals key regulators of infectionCited by: 87
Author(s): Wael Kamel, Marko Noerenberg, Berati Cerikan, Honglin Chen, Aino I Järvelin, Mohamed Kammoun, Young Seok Lee, Shuai Ni, Manuel García-Moreno, Anna Andrejeva, Michael J. Deery, Natasha Johnson, Christopher J Neufeldt, Mirko Cortese, Michael Knight, Kathryn S. Lilley, Javier Martı̂nez, Ilan Davis, Ralf Bartenschlager, Shabaz Mohammed, Alfredo Castelló
Software Mentions: 18
Published: over 3 years ago
10.1371/journal.pbio.3001296
Tapping into non-English-language science for the conservation of global biodiversityCited by: 79
Author(s): Tatsuya Amano, Violeta Berdejo‐Espinola, Alec P. Christie, Kate Willott, Munemitsu Akasaka, András Báldi, Anna Berthinussen, Sandro Bertolino, Andrew J. Bladon, Min Chen, Chang Yong Choi, Magda Bou Dagher Kharrat, Luís Guilherme de Oliveira, Perla Farhat, Marina Golivets, Nataly Hidalgo Aranzamendi, Kerstin Jantke, Joanna Kajzer‐Bonk, M. Çisel Kemahlı Aytekin, Igor Khorozyan, Kensuke Kito, Ko Konno, Da Li Lin, Nick A. Littlewood, Yang Liu, Yifan Liu, Matthias Claudio Loretto, Valentina Marconi, Philip A. Martin, William H. Morgan, Juan Pablo Narváez-Gómez, Pablo José Negret, Elham Nourani, José Manuel Ochoa Quintero, Nancy Ockendon, Rachel Rui Ying Oh, Silviu O. Petrovan, Ana Cláudia Piovezan-Borges, Ingrid L. Pollet, Danielle Leal Ramos, Ana L. Reboredo Segovia, A. Nayelli Rivera‐Villanueva, Ricardo Rocha, Marie Morgane Rouyer, Katherine A. Sainsbury, Richard Schuster, Dominik Schwab, Çaǧan H. Şekercioǧlu, Hae Min Seo, Gorm E. Shackelford, Yushin Shinoda, Rebecca K. Smith, Shan Dar Tao, Ming-shan Tsai, Elizabeth Tyler, Flóra Vajna, José O. Valdebenito, Svetlana Vozykova, Paweł Waryszak, Veronica Zamora‐Gutiérrez, Rafael Dudeque Zenni, Wenjun Zhou, William J. Sutherland
Software Mentions: 18
Published: about 3 years ago
10.1371/journal.pbio.3000673
“Frozen evolution” of an RNA virus suggests accidental release as a potential cause of arbovirus re-emergenceCited by: 15
Author(s): David Pascall, Kyriaki Nomikou, Emmanuel Bréard, Stéphan Zientara, Ana da Silva Filipe, Bernd Hoffmann, Maude Jacquot, Joshua B. Singer, Kris De Clercq, Anette Bøtner, Corinne Sailleau, Cyril Viarouge, Carrie Batten, Giantonella Puggioni, Ciriaco Ligios, Giovanni Savini, Piet A. van Rijn, Peter Mertens, Roman Biek, Massimo Palmarini
Software Mentions: 18
Published: over 4 years ago
10.1093/gigascience/giaa010
Interpretable and accurate prediction models for metagenomics dataCited by: 29
Author(s): Edi Prifti, Yann Chevaleyre, Blaise Hanczar, Eugeni Belda, Antoine Danchin, Karine Clément, Jean-Daniel Zucker
Software Mentions: 18
Published: over 4 years ago
10.1038/s41598-020-80340-y
Universal principles underlying segmental structures in parrot song and human speechCited by: 6
Author(s): Dan C. Mann, W. Tecumseh Fitch, Hsiao‐Wei Tu, Marisa Hoeschele
Software Mentions: 17
Published: almost 4 years ago
10.1084/jem.20200920
Single-cell analyses identify circulating anti-tumor CD8 T cells and markers for their enrichmentCited by: 57
Author(s): Kristen E. Pauken, Osmaan Shahid, Kaitlyn A. Lagattuta, Kelly Mahuron, Jacob M. Luber, Margaret M. Lowe, Lüping Huang, Conor P. Delaney, Jaclyn M. Long, Megan E. Fung, Kathleen Newcomer, Katy K. Tsai, Melissa Chow, Samantha Guinn, Juhi R. Kuchroo, Kelly P. Burke, Jason M. Schenkel, Michael D. Rosenblum, Adil Daud, Arlene H. Sharpe, Meromit Singer
Software Mentions: 17
Published: over 3 years ago
10.3390/brainsci11081017
Facial Signals and Social Actions in Multimodal Face-to-Face InteractionCited by: 14
Author(s): Naomi Nota, James P. Trujillo, Judith Holler
Software Mentions: 17
Published: over 3 years ago
10.3389/fmicb.2019.00240
Changes in Trophic Groups of Protists With Conversion of Rainforest Into Rubber and Oil Palm PlantationsCited by: 38
Author(s): Garvin Schulz, Dominik Schneider, Nicole Brinkmann, Nur Edy, Rolf Daniel, Andrea Polle, Stefan Scheu, Valentyna Krashevska
Software Mentions: 16
Published: almost 6 years ago
10.1371/journal.pone.0231982
Rapid processing of neutral and angry expressions within ongoing facial stimulus streams: Is it all about isolated facial features?Cited by: 2
Author(s): Antonio Schettino, Emanuele Porcu, Christopher Gundlach, Christian Keitel, Matthias Müller
Software Mentions: 16
Published: over 4 years ago
10.7554/eLife.21883
Layer-specific chromatin accessibility landscapes reveal regulatory networks in adult mouse visual cortexCited by: 72
Author(s): Lucas T. Gray, Zizhen Yao, Thuc Nghi Nguyen, Tae Kyung Kim, Hongkui Zeng, Bosiljka Tasic
Software Mentions: 16
Published: almost 8 years ago
10.1126/sciimmunol.abd6832
Natural killer cell immunotypes related to COVID-19 disease severityCited by: 315
Author(s): Christopher Maucourant, Iva Filipovic, Andrea Ponzetta, Soo Aleman, Martin Cornillet, Laura Hertwig, Benedikt Strunz, Antonio Lentini, Björn Reinius, Demi Brownlie, Angélica Cuapio, Eivind Heggernes Ask, Ryan M. Hull, Alvaro Haroun-Izquierdo, Marie Schaffer, Jonas Klingström, Elin Folkesson, Marcus Buggert, Johan K. Sandberg, Lars Eriksson, Olav Rooyackers, Hans‐Gustaf Ljunggren, Karl‐Johan Malmberg, Jakob Michaëlsson, Nicole Marquardt, Quirin Hammer, Kristoffer Strålin, Niklas K. Björkström
Software Mentions: 16
Published: over 4 years ago
10.12688/f1000research.16198.2
scClustViz – Single-cell RNAseq cluster assessment and visualizationCited by: 25
Author(s): Brendan T. Innes, Gary D. Bader
Software Mentions: 16
Published: over 5 years ago
10.1128/mBio.00034-20
Proposal of a Taxonomic Nomenclature for the Bacillus cereus Group Which Reconciles Genomic Definitions of Bacterial Species with Clinical and Industrial PhenotypesCited by: 98
Author(s): Laura M. Carroll, Martin Wiedmann, Jasna Kovač
Software Mentions: 15
Published: over 4 years ago
10.1038/s41598-021-87843-2
Bodily ownership and agency sensations in a natural stateCited by: 1
Author(s): Souta Hidaka, Kyoshiro Sasaki, Toshikazu Kawagoe, Nobuyuki Asai, Wataru Teramoto
Software Mentions: 15
Published: over 3 years ago
10.3389/fmicb.2020.580691
No Assembly Required: Using BTyper3 to Assess the Congruency of a Proposed Taxonomic Framework for the Bacillus cereus Group With Historical Typing MethodsCited by: 20
Author(s): Laura M. Carroll, Rachel A. Cheng, Jasna Kovač
Software Mentions: 15
Published: about 4 years ago
10.1038/s42003-021-01796-w
Temporal association between human upper respiratory and gut bacterial microbiomes during the course of COVID-19 in adultsCited by: 73
Author(s): Rong Xu, Renfei Lu, Tao Zhang, Qian Wu, Wei Cai, Xudong Han, Zhenzhou Wan, Xia Jin, Zhigang Zhang, Chiyu Zhang
Software Mentions: 15
Published: almost 4 years ago
10.1371/journal.pgen.1009110
Unique genetic signatures of local adaptation over space and time for diapause, an ecologically relevant complex trait, in Drosophila melanogasterCited by: 45
Author(s): Priscilla A. Erickson, Cory A. Weller, Daniel Song, Alyssa Bangerter, Paul S. Schmidt, Alan O. Bergland
Software Mentions: 15
Published: about 4 years ago
10.1371/journal.pone.0219892
Quantification and isolation of Bacillus subtilis spores using cell sorting and automated gatingCited by: 18
Author(s): Marianna Karava, Felix Bracharz, Johannes Kabisch
Software Mentions: 15
Published: over 5 years ago
10.3389/fpls.2021.618028
Floral UV Features of Plant Species From a Neotropical SavannaCited by: 6
Author(s): Priscila Tunes, Maria Gabriela Gutierrez Camargo, Elza Guimarães
Software Mentions: 15
Published: over 3 years ago
10.1186/s13059-019-1783-3
AlleleAnalyzer: a tool for personalized and allele-specific sgRNA designCited by: 20
Author(s): Kathleen C. Keough, Svetlana Lyalina, Michael P. Olvera, Sean Whalen, Bruce R. Conklin, Katherine S. Pollard
Software Mentions: 14
Published: over 5 years ago
10.7554/eLife.53392
ZCWPW1 is recruited to recombination hotspots by PRDM9 and is essential for meiotic double strand break repairCited by: 23
Author(s): Daniel Wells, Emmanuelle Bitoun, Daniela Moralli, Gang Zhang, Anjali Gupta Hinch, Julia Jankowska, Peter Donnelly, Catherine Green, Simon Myers
Software Mentions: 14
Published: over 4 years ago
10.1093/bioinformatics/btx657
heatmaply: an R package for creating interactive cluster heatmaps for online publishingCited by: 334
Author(s): Tal Galili, Alan O’Callaghan, Jonathan Savage, Carson Sievert
Software Mentions: 14
Published: about 7 years ago
10.1038/s41598-020-80165-9
Multi-level remodelling of chromatin underlying activation of human T cellsCited by: 23
Author(s): Naiara G. Bediaga, Hannah D. Coughlan, Timothy M. Johanson, Alexandra L. Garnham, Gaetano Naselli, Jan Schröder, Liam G. Fearnley, Esther Bandala‐Sanchez, Rhys S. Allan, Gordon K. Smyth, Leonard C. Harrison
Software Mentions: 14
Published: almost 4 years ago
10.3390/microorganisms9061167
Diversity and Oil Degradation Potential of Culturable Microbes Isolated from Chronically Contaminated Soils in TrinidadCited by: 10
Author(s): Amanda C. Ramdass, Sephra N. Rampersad
Software Mentions: 14
Published: over 3 years ago
10.3389/fpsyg.2020.564083
Correlates of Health-Protective Behavior During the Initial Days of the COVID-19 Outbreak in NorwayCited by: 54
Author(s): Janis Zickfeld, Thomas W. Schubert, Anders Kuvaas Herting, Jon Grahe, Kate Faasse
Software Mentions: 14
Published: about 4 years ago
10.1186/s40168-020-00914-w
Faecal microbiota transplant from aged donor mice affects spatial learning and memory via modulating hippocampal synaptic plasticity- and neurotransmission-related proteins in young recipientsCited by: 118
Author(s): Alfonsina D’Amato, Lorenzo Mannelli, Elena Lucarini, Angela L. Man, Gwénaëlle Le Gall, Jacopo Junio Valerio Branca, Carla Ghelardini, Amedeo Amedei, Eugenio Bertelli, Marì Regoli, Alessandra Pacini, Giulia Luciani, Pasquale Gallina, Annalisa Altera, Arjan Narbad, Massimo Gulisano, Lesley Hoyles, David Vauzour, Claudio Nicoletti
Software Mentions: 14
Published: about 4 years ago
10.1371/journal.pone.0253148
Enhancing monitoring of rewilding progress through wildlife tracking and remote sensingCited by: 1
Author(s): Julia Carolina Mata, Robert Buitenwerf, Jens‐Christian Svenning
Software Mentions: 13
Published: over 3 years ago
10.3389/fimmu.2020.620716
Multiscale Modeling of Germinal Center Recapitulates the Temporal Transition From Memory B Cells to Plasma Cells Differentiation as Regulated by Antigen Affinity-Based Tfh Cell HelpCited by: 14
Author(s): Elena Merino Tejero, Danial Lashgari, Rodrigo García-Valiente, Xuefeng Gao, Fabien Crauste, Philippe A. Robert, Michael Meyer‐Hermann, María Rodríguez Martínez, S. Marieke van Ham, Jeroen E. J. Guikema, Huub Hoefsloot, Antoine H. C. van Kampen
Software Mentions: 13
Published: almost 4 years ago
10.1038/s41598-020-78747-8
Non-invasive assessment of skeletal muscle fibrosis in mice using nuclear magnetic resonance imaging and ultrasound shear wave elastographyCited by: 6
Author(s): Aurea B. Martins-Bach, Damien Bachasson, E. Araujo, Lucas Soustelle, Paulo Loureiro de Sousa, Y. Fromes, Pierre Carlier
Software Mentions: 13
Published: almost 4 years ago
10.4269/ajtmh.20-0757
A Computational Modeling Study of COVID-19 in BangladeshCited by: 7
Author(s): Irtesam Mahmud Khan, Ubydul Haque, Samiha Kaisar, Md. Saidur Rahman
Software Mentions: 12
Published: almost 4 years ago
10.7717/peerj.5661
High-throughput metabarcoding reveals the effect of physicochemical soil properties on soil and litter biodiversity and community turnover across AmazoniaCited by: 17
Author(s): Camila Duarte Ritter, Alexander Zizka, Fabian Roger, Hanna Tuomisto, Christopher J. Barnes, R. Henrik Nilsson, Alexandre Antonelli
Software Mentions: 12
Published: about 6 years ago
10.3390/cells10051066
Integrated microRNA and mRNA Expression Profiling Identifies Novel Targets and Networks Associated with Ebstein’s AnomalyCited by: 5
Author(s): Masood Abu‐Halima, Viktoria Wagner, Lea Simone Becker, Basim Ayesh, Mohammed Abd El-Rahman, Ulrike Fischer, Eckart Meese, Hashim Abdul‐Khaliq
Software Mentions: 12
Published: over 3 years ago
10.3390/genes9120569
NeVOmics: An Enrichment Tool for Gene Ontology and Functional Network Analysis and Visualization of Data from OMICs TechnologiesCited by: 13
Author(s): Eduardo Zúñiga-León, Ulises Carrasco-Navarro, Francisco Fierro
Software Mentions: 12
Published: about 6 years ago
10.1186/s12974-021-02235-7
Sex differences and similarities in the neuroimmune response to central administration of poly I:CCited by: 14
Author(s): Caitlin K. Posillico, Rosa E. Garcia-Hernandez, Natalie C. Tronson
Software Mentions: 12
Published: about 3 years ago
10.1098/rsos.191333
Now or never: noticing occurs early in sustained inattentional blindnessCited by: 4
Author(s): Katherine Wood, Daniel J. Simons
Software Mentions: 10
Published: about 5 years ago
10.3390/ijms21051754
MiR&moRe2: A Bioinformatics Tool to Characterize microRNAs and microRNA-Offset RNAs from Small RNA-Seq DataCited by: 10
Author(s): Enrico Gaffo, Michele Bortolomeazzi, Andrea Bisognin, Piero Di Battista, Federica Lovisa, Lara Mussolin, Stefania Bortoluzzi
Software Mentions: 10
Published: over 4 years ago
10.1371/journal.pone.0238496
Lyme disease and relapsing fever in Mexico: An overview of human and wildlife infectionsCited by: 18
Author(s): Pablo Colunga‐Salas, Sokani Sánchez‐Montes, Patricia Volkow, Adriana Ruíz-Remigio, Ingeborg Becker
Software Mentions: 10
Published: about 4 years ago
10.1186/s11689-021-09360-7
Modeling familial predictors of proband outcomes in neurogenetic disorders: initial application in XYY syndromeCited by: 3
Author(s): Kathleen Wilson, Ari M. Fish, Catherine Mankiw, Anastasia Xenophontos, Allysa Warling, Ethan T. Whitman, Liv S. Clasen, Erin Torres, Jonathan D. Blumenthal, Armin Raznahan
Software Mentions: 10
Published: over 3 years ago
10.1038/s41598-020-62453-6
Patterns of Rift Valley fever virus seropositivity in domestic ruminants in central South Africa four years after a large outbreakCited by: 19
Author(s): Yusuf B. Ngoshe, Alida Avenant, Melinda K. Rostal, William B. Karesh, Janusz T. Pawęska, Whitney Bagge, Petrus Jansen van Vuren, Alan C. Kemp, Claudia Cordel, Veerle Msimang, Peter N. Thompson
Software Mentions: 10
Published: over 4 years ago
10.3390/metabo10030086
Local Phenomena Shape Backyard Soil Metabolite CompositionCited by: 9
Author(s): Tra D Nguyen, Mahbobeh Lesani, Ines Forrest, Yunpeng Lan, Danya A. Dean, Quentin M. R. Gibaut, Yanting Guo, Ekram Hossain, Marcela Olvera, Hannah Panlilio, Adwaita R. Parab, Chao‐Yi Wu, Jean A. Bernatchez, Robert H. Cichewicz, Laura-Isobel McCall
Software Mentions: 9
Published: over 4 years ago
10.1038/s41598-018-30701-5
Electrophysiological correlates of the interplay between low-level visual features and emotional content during word readingCited by: 22
Author(s): Sebastian Schindler, Antonio Schettino, Gilles Pourtois
Software Mentions: 9
Published: over 6 years ago
10.3390/v11100910
Host Range of Bacteriophages Against a World-Wide Collection of Erwinia amylovora Determined Using a Quantitative PCR AssayCited by: 14
Author(s): Steven Gayder, Michael Parcey, Alan J. Castle, A. M. Svircev
Software Mentions: 9
Published: about 5 years ago
10.1038/s41598-020-74647-z
Passive acoustic listening stations (PALS) show rapid onset of ecological effects of harmful algal blooms in real timeCited by: 9
Author(s): Athena M. Rycyk, Reny B. Tyson Moore, Randall S. Wells, Katherine McHugh, Elizabeth J. Berens McCabe, David A. Mann
Software Mentions: 9
Published: about 4 years ago
10.1371/journal.pone.0247790
Parasitism and host behavior in the context of a changing environment: The Holocene record of the commercially important bivalve Chamelea gallina, northern ItalyCited by: 3
Author(s): John Warren Huntley, Daniele Scarponi
Software Mentions: 9
Published: over 3 years ago
10.12688/f1000research.14966.1
iSEE: Interactive SummarizedExperiment ExplorerCited by: 68
Author(s): Kévin Rue-Albrecht, Fédérico Marini, Charlotte Soneson, Aaron T. L. Lun
Software Mentions: 9
Published: over 6 years ago
10.1038/s41598-019-55984-0
Patterns of diverse gene functions in genomic neighborhoods predict gene function and phenotypeCited by: 16
Author(s): Matej Mihelčić, Tomislav Šmuc, Fran Supek
Software Mentions: 9
Published: almost 5 years ago
10.1038/s41598-019-52241-2
Tradeoffs in the value of biodiversity feature and cost data in conservation prioritizationCited by: 11
Author(s): Amanda D. Rodewald, Matthew Strimas‐Mackey, Richard Schuster, Peter Arcese
Software Mentions: 8
Published: about 5 years ago
10.3390/cells8080920
The Snapdragon LATE ELONGATED HYPOCOTYL Plays A Dual Role in Activating Floral Growth and Scent EmissionCited by: 9
Author(s): Marta I. Terry, Fernando Pérez-Sánz, Pedro J. Navarro, Julia Weiß, Marcos Egea‐Cortines
Software Mentions: 8
Published: over 5 years ago
10.1128/mSphere.00916-19
Dual and Triple Epithelial Coculture Model Systems with Donor-Derived Microbiota and THP-1 Macrophages To Mimic Host-Microbe Interactions in the Human Sinonasal CavitiesCited by: 15
Author(s): Charlotte De Rudder, Marta Calatayud, Sarah Lebeer, Tom Van de Wiele
Software Mentions: 8
Published: over 4 years ago
10.1371/journal.pone.0199239
Optimizing colormaps with consideration for color vision deficiency to enable accurate interpretation of scientific dataCited by: 91
Author(s): Jamie Nuñez, Christopher R. Anderton, Ryan Renslow
Software Mentions: 8
Published: over 6 years ago
10.3390/s20236723
Wide Field Spectral Imaging with Shifted Excitation Raman Difference Spectroscopy Using the Nod and Shuffle TechniqueCited by: 7
Author(s): Florian Korinth, Elmar Schmälzlin, Clara Stiebing, T. Urrutia, Genoveva Micheva, C. Sandín, André Müller, Bernd Sumpf, Christoph Krafft, G. Tränkle, Martin Roth, Jürgen Popp
Software Mentions: 8
Published: almost 4 years ago
10.1007/s12031-020-01787-2
Studying Autism Using Untargeted Metabolomics in Newborn Screening SamplesCited by: 13
Author(s): Julie Courraud, Madeleine Ernst, Susan Svane Laursen, David M. Hougaard, Arieh Cohen
Software Mentions: 8
Published: almost 4 years ago
10.1371/journal.pgen.1009385
Split versions of Cleave and Rescue selfish genetic elements for measured self limiting gene driveCited by: 19
Author(s): Georg Oberhofer, Tobin Ivy, Bruce A. Hay
Software Mentions: 7
Published: almost 4 years ago
10.3390/ijerph15020250
Using Twitter to Better Understand the Spatiotemporal Patterns of Public Sentiment: A Case Study in Massachusetts, USACited by: 32
Author(s): Xiaodong Cao, Piers MacNaughton, Zhengyi Deng, Jie Yin, Xi Zhang, Joseph G. Allen
Software Mentions: 7
Published: almost 7 years ago
10.2196/19791
Investigating the Prevalence of Reactive Online Searching in the COVID-19 Pandemic: Infoveillance StudyCited by: 27
Author(s): Rafael A Badell-Grau, Jordan P. Cuff, Brendan P. Kelly, Helen Waller-Evans, Emyr Lloyd-Evans
Software Mentions: 7
Published: about 4 years ago
10.1371/journal.pone.0257386
(DIGSS) Determination of Intervals using Georeferenced Survey Simulation: An R package for subsurface surveyCited by: 0
Author(s): William J. Pestle, Cara Hubbell, Mark Hübbe
Software Mentions: 7
Published: about 3 years ago
10.1002/bit.27209
Comparative genome‐scale analysis of <i>Pichia pastoris</i> variants informs selection of an optimal base strainCited by: 31
Author(s): Joseph Brady, Charles A. Whittaker, Melody C. Tan, D. Lee Kristensen, Duanduan Ma, Neil C. Dalvie, Kerry R. Love, J. Christopher Love
Software Mentions: 7
Published: about 5 years ago
10.5888/pcd17.190286
Visualizing 50 Years of Cancer Mortality Rates Across the US at Multiple Geographic Levels Using a Synchronized Map and Graph AnimationCited by: 0
Author(s): Isaac H. Michaels, Sylvia Pirani, Alvaro Carrascal
Software Mentions: 7
Published: over 4 years ago
10.1038/s41598-019-43829-9
Tissue-specific genes as an underutilized resource in drug discoveryCited by: 29
Author(s): Maria Ryaboshapkina, Mårten Hammar
Software Mentions: 7
Published: over 5 years ago
10.3390/v11030240
Bat Research Networks and Viral Surveillance: Gaps and Opportunities in Western AsiaCited by: 26
Author(s): Kendra L. Phelps, Luke Hamel, Nisreen Al-Hmoud, Shahzad Ali, Raşi̇t Bi̇lgi̇n, Ketevan Sidamonidze, Lela Urushadze, William B. Karesh, Kevin J. Olival
Software Mentions: 7
Published: over 5 years ago
10.1186/s41118-017-0018-2
Decomposition of regional convergence in population aging across EuropeCited by: 16
Author(s): Ilya Kashnitsky, Joop de Beer, Leo van Wissen
Software Mentions: 6
Published: over 7 years ago
10.1371/journal.pntd.0008487
Non-invasive monitoring of drug action: A new live in vitro assay design for Chagas’ disease drug discoveryCited by: 5
Author(s): Anna Fesser, Olivier Braissant, F.J. Olmo, John M. Kelly, Pascal Mäser, Marcel Kaiser
Software Mentions: 6
Published: over 4 years ago
10.2196/23369
Engagement With a Behavior Change App for Alcohol Reduction: Data Visualization for Longitudinal Observational StudyCited by: 16
Author(s): Lauren N. Bell, Claire Garnett, Tianchen Qian, Olga Perski, Elizabeth Williamson, Henry W W Potts
Software Mentions: 6
Published: almost 4 years ago
10.7717/peerj.9697
Phytotoxin synthesis genes and type III effector genes of <i>Pseudomonas syringae</i> pv. <i>actinidiae</i> biovar 6 are regulated by culture conditionsCited by: 2
Author(s): Karin Hirose, Yasuhiro Ishiga, Takashi Fujikawa
Software Mentions: 6
Published: over 4 years ago
10.3389/fmicb.2020.559035
Zika Virus Infection Results in Biochemical Changes Associated With RNA Editing, Inflammatory and Antiviral Responses in Aedes albopictusCited by: 6
Author(s): Maria G Onyango, Geoffrey M. Attardo, Erin Taylor Kelly, Sean M. Bialosuknia, Jessica Stout, Elyse Banker, Lili Kuo, Alexander T. Ciota, Laura D. Kramer
Software Mentions: 6
Published: about 4 years ago
10.1371/journal.pone.0236200
Shelter use interactions of invasive lionfish with commercially and ecologically important native invertebrates on Caribbean coral reefsCited by: 6
Author(s): Christina L. Hunt, Dominic A. Andradi‐Brown, Callum J. Hudson, Joshua Bennett-Williams, Frankie Noades, Jocelyn Curtis-Quick, Owen T. Lewis, Dan A. Exton
Software Mentions: 6
Published: about 4 years ago
10.1186/s12885-020-07438-4
A 38-gene model comprised of key TET2-associated genes shows additive utility to high-risk prostate cancer cases in the prognostication of biochemical recurrenceCited by: 1
Author(s): Shivani Kamdar, Neil Fleshner, Bharati Bapat
Software Mentions: 6
Published: about 4 years ago
10.1098/rstb.2020.0366
Phanerozoic parasitism and marine metazoan diversity: dilution versus amplificationCited by: 16
Author(s): Kenneth De Baets, John Warren Huntley, Daniele Scarponi, Adiël A. Klompmaker, Aleksandra Skawina
Software Mentions: 6
Published: about 3 years ago
10.3390/cells8040343
The Petunia CHANEL Gene is a ZEITLUPE Ortholog Coordinating Growth and Scent ProfilesCited by: 18
Author(s): Marta I. Terry, Fernando Pérez-Sánz, María Victoria Díaz-Galián, Felipe Pérez de los Cobos, Pedro J. Navarro, Marcos Egea‐Cortines, Julia Weiß
Software Mentions: 5
Published: over 5 years ago
10.3390/cancers13040610
Comprehensive Epstein-Barr Virus Transcriptome by RNA-Sequencing in Angioimmunoblastic T Cell Lymphoma (AITL) and Other LymphomasCited by: 17
Author(s): Nader Bayda, Valentin Tilloy, Alain Chaunavel, Racha Bahri, Mohamad Adnan Halabi, Jean Feuillard, Arnaud Jaccard, Sylvie Ranger-Rogez
Software Mentions: 5
Published: almost 4 years ago
10.1534/g3.119.400898
Interactively AUDIT Your Growth Curves with a Suite of R PackagesCited by: 4
Author(s): Nicolas Coutin, Guri Giaever, Corey Nislow
Software Mentions: 5
Published: over 4 years ago
10.1111/gcb.15548
Systemic effects of rising atmospheric vapor pressure deficit on plant physiology and productivityCited by: 74
Author(s): José R. López, Danielle A. Way, Walid Sadok
Software Mentions: 5
Published: over 3 years ago
10.1038/s41598-019-53975-9
Longitudinal study of the bacterial and fungal microbiota in the human sinuses reveals seasonal and annual changes in diversityCited by: 34
Author(s): Brett Wagner Mackenzie, Kevin Chang, Melissa Zoing, Ravi Jain, Michael Hoggard, Kristi Biswas, Richard Douglas, Michael W. Taylor
Software Mentions: 5
Published: about 5 years ago
10.1128/mBio.03551-20
The Termite Fungal Cultivar <i>Termitomyces</i> Combines Diverse Enzymes and Oxidative Reactions for Plant Biomass ConversionCited by: 13
Author(s): Felix Schalk, Cene Gostinčar, Nina B. Kreuzenbeck, Benjamin H. Conlon, Elisabeth Sommerwerk, Patrick Rabe, Immo Burkhardt, Thomas Krüger, Olaf Kniemeyer, Axel A. Brakhage, Nina Gunde‐Cimerman, Z. Wilhelm de Beer, Jeroen S. Dickschat, Michael Poulsen, Christine Beemelmanns
Software Mentions: 5
Published: over 3 years ago
10.7554/eLife.62529
Journal policies and editors’ opinions on peer reviewCited by: 24
Author(s): Daniel G Hamilton, Hannah Fraser, Rink Hoekstra, Fiona Fidler
Software Mentions: 5
Published: about 4 years ago
10.3390/microorganisms9071411
Enterocin Cross-Resistance Mediated by ABC Transport SystemsCited by: 4
Author(s): Claudia Teso-Pérez, Manuel Martínez‐Bueno, Juan Manuel Peralta‐Sánchez, Eva Valdivia, Mercedes Maqueda, María Esther Fárez-Vidal, Antonio Manuel Martín-Platero
Software Mentions: 4
Published: over 3 years ago
10.1093/molbev/msaa328
Fast and Robust Identity-by-Descent Inference with the Templated Positional Burrows–Wheeler TransformCited by: 19
Author(s): William A. Freyman, Kimberly F. McManus, Suyash Shringarpure, Ethan M. Jewett, Katarzyna Bryc, Adam Auton
Software Mentions: 4
Published: almost 4 years ago
10.1186/s13148-021-01153-y
Betamethasone administration during pregnancy is associated with placental epigenetic changes with implications for inflammationCited by: 9
Author(s): Darina Czamara, Linda Dieckmann, Simone Röh, Sarah Kraemer, Rebecca C. Rancourt, Sara Sammallahti, Eero Kajantie, Hannele Laivuori, Johan G. Eriksson, Katri Räikkönen, Wolfgang Henrich, Andreas Plagemann, Elisabeth B. Binder, Thorsten Braun, Sonja Entringer
Software Mentions: 4
Published: about 3 years ago
10.3389/fmicb.2020.00267
Metatranscriptomic Insights Into the Response of River Biofilm Communities to Ionic and Nano-Zinc Oxide ExposuresCited by: 8
Author(s): Jordyn Bergsveinson, James W. Roy, Christine Maynard, Sylvie Sanschagrin, Claire N. Freeman, G. D. W. Swerhone, James J. Dynes, Julien Tremblay, Charles W. Greer, Darren R. Korber, John R. Lawrence
Software Mentions: 4
Published: over 4 years ago
10.3389/fmicb.2021.625400
Rumen Epithelial Communities Share a Core Bacterial Microbiota: A Meta-Analysis of 16S rRNA Gene Illumina MiSeq Sequencing DatasetsCited by: 22
Author(s): Chiron J Anderson, Lucas R Koester, Stephan Schmitz‐Esser
Software Mentions: 4
Published: over 3 years ago
10.1007/s00384-021-03944-4
Pilonidal sinus disease on the rise: a one-third incidence increase in inpatients in 13 years with substantial regional variation in GermanyCited by: 17
Author(s): Christina Oetzmann von Sochaczewski, Jan Gödeke
Software Mentions: 4
Published: over 3 years ago
10.1186/s12859-019-2890-6
Detection and visualization of communities in mass spectrometry imaging dataCited by: 16
Author(s): Karsten Wüllems, Jan Kölling, Hanna Bednarz, Karsten Niehaus, Volkmar Hans, Tim Wilhelm Nattkemper
Software Mentions: 3
Published: over 5 years ago
10.17691/stm2020.12.2.11
Correlation of Lipid Profile and Glycated Hemoglobin as a New Prognostic Criterion for Type 2 Diabetes Mellitus Development and ProgressionCited by: 1
Author(s): Е. А. Загребин, Е. А. Шевченко, E. Yu. Ivanchenko, V.I. Uspensky, S.R. Abasnia, А. В. Кочеткова, Olga Uspenskaya, A. R. Vaysberg
Software Mentions: 2
Published: over 4 years ago
10.1534/g3.118.200123
Loci That Control Nonlinear, Interdependent Responses to Combinations of Drought and Nitrogen LimitationCited by: 1
Author(s): Megan Chang, Danielle Allery Nail, Toni Kazic, Susan J. Simmons, Ann E. Stapleton
Software Mentions: 2
Published: over 6 years ago
10.7554/eLife.59954
Drift and termination of spiral waves in optogenetically modified cardiac tissue at sub-threshold illuminationCited by: 30
Author(s): Sayedeh Hussaini, Vishalini Venkatesan, Valentina Biasci, José Miguel Romero Sepúlveda, Raul A Quiñonez Uribe, Leonardo Sacconi, Gil Bub, Claudia Richter, Valentin Krinski, Ulrich Parlitz, Rupamanjari Majumder, Stefan Luther
Software Mentions: 2
Published: almost 4 years ago
10.3390/cells10040840
NF-κB and TNF Affect the Astrocytic Differentiation from Neural Stem CellsCited by: 7
Author(s): Cindy Birck, Aurélien Ginolhac, Maria Angeliki S. Pavlou, Alessandro Michelucci, Paul Heuschling, Luc Grandbarbe
Software Mentions: 2
Published: over 3 years ago