Data

Tools

Indexes

Applications

Experiments

Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1128/mSphere.00916-19

https://doi.org/10.1128/mSphere.00916-19

Dual and Triple Epithelial Coculture Model Systems with Donor-Derived Microbiota and THP-1 Macrophages To Mimic Host-Microbe Interactions in the Human Sinonasal Cavities

Cited by: 15
Author(s): Charlotte De Rudder, Marta Calatayud, Sarah Lebeer, Tom Van de Wiele
Published: over 5 years ago

Software Mentions 8

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
Very Likely Science (75)
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
Very Likely Science (100)
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
Very Likely Science (85)
cran: PMCMR
Calculate Pairwise Multiple Comparisons of Mean Rank Sums
Papers that mentioned: 135
Very Likely Science (75)
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
Very Likely Science (100)
cran: viridis
Colorblind-Friendly Color Maps for R
Papers that mentioned: 92
Very Likely Science (100)
pypi: viridis
Tree data structures and algorithms
Papers that mentioned: 92
Very Likely Science (100)