Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-019-1783-3

https://doi.org/10.1186/s13059-019-1783-3

AlleleAnalyzer: a tool for personalized and allele-specific sgRNA design

Cited by: 20
Author(s): Kathleen C. Keough, Svetlana Lyalina, Michael P. Olvera, Sean Whalen, Bruce R. Conklin, Katherine S. Pollard
Published: over 5 years ago

Software Mentions 14

cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: ggraph
An Implementation of Grammar of Graphics for Graphs and Networks
Papers that mentioned: 58
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
cran: readr
Read Rectangular Text Data
Papers that mentioned: 80
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
cran: tidyr
Tidy Messy Data
Papers that mentioned: 321
cran: viridis
Colorblind-Friendly Color Maps for R
Papers that mentioned: 92
cran: viridisLite
Colorblind-Friendly Color Maps (Lite Version)
Papers that mentioned: 7
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555
pypi: matplotlib
Python plotting package
Papers that mentioned: 1,045
pypi: PuLP
PuLP is an LP modeler written in python. PuLP can generate MPS or LP files and call GLPK, COIN CLP/CBC, CPLEX, and GUROBI to solve linear problems.
Papers that mentioned: 4
pypi: pyfaidx
pyfaidx: efficient pythonic random access to fasta subsequences
Papers that mentioned: 7
pypi: viridis
Tree data structures and algorithms
Papers that mentioned: 92