Projects: pypi: pyfaidx
https://packages.ecosyste.ms/registries/pypi.org/packages/pyfaidx
pyfaidx: efficient pythonic random access to fasta subsequences
85 versions
Latest release: almost 2 years ago
57 dependent packages
93,125 downloads last month
Enhanced Analysis
Educational Contributors:
[email protected]
[email protected]
Repository Activity:
Repository Owner:
Matt Shirley (user)
Data Scientist @Novartis, CSO Sturge-Weber Foundation. Oncology and Rare Disease Research [email protected] Academic
Data Scientist @Novartis, CSO Sturge-Weber Foundation. Oncology and Rare Disease Research [email protected] Academic
README Analysis:
DOI Found
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+40
Educational commit emails
2 contributors with educational email addresses -
+20
Academic repository owner
Repository owned by academic institution -
+2
Science terms in README
1 scientific terms found in README -
+20
DOI references
2 DOI references found in README
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem -
-10
No science terms in description
No scientific terms found in description
Very Likely Science (100)
Papers Mentioning pyfaidx 7
10.12688/f1000research.51477.2
An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebratesCited by: 2
Author(s): Ann Mc Cartney, Medhat Mahmoud, Michael D. Jochum, Daniel Paiva Agustinho, Barry Zorman, Ahmad Al Khleifat, Fawaz Dabbaghie, Rupesh K. Kesharwani, Moritz Smolka, Moez Dawood, Dreycey Albin, Elbay Aliyev, Hakeem Almabrazi, Ahmed Arslan, Advait Balaji, Sairam Behera, Kimberley Billingsley, Daniel Cameron, Joyjit Daw, Eric T. Dawson, Wouter De Coster, Haowei Du, Christopher Dunn, Rocio Esteban, Angad Jolly, Divya Kalra, Chunxiao Liao, Yunxi Liu, Tsung-Yu Lu, James M Havrilla, Michael M. Khayat, Maximillian G. Marin, Jean Monlong, Stephen Price, Alejandro Rafael Gener, Jimin Ren, Sagayamary Sagayaradj, Nicolae Sapoval, Claude Sinner, Daniela C. Soto, Arda Söylev, Arun Subramaniyan, Najeeb Syed, Neha Tadimeti, Pamella Tater, Pankaj Vats, Justin N. Vaughn, Kimberly Walker, Gaojianyong Wang, Qiandong Zeng, Shangzhe Zhang, Tingting Zhao, Bryce Kille, Evan Biederstedt, Mark Chaisson, Adam C. English, Zev Kronenberg, Todd J. Treangen, Timothy Hefferon, Chen-Shan Chin, Ben Busby, Fritz J. Sedlazeck
Software Mentions: 14
Published: almost 4 years ago
10.1186/s13059-019-1783-3
AlleleAnalyzer: a tool for personalized and allele-specific sgRNA designCited by: 20
Author(s): Kathleen C. Keough, Svetlana Lyalina, Michael P. Olvera, Sean Whalen, Bruce R. Conklin, Katherine S. Pollard
Software Mentions: 14
Published: almost 6 years ago
10.1186/s12862-021-01806-9
The diversity of opsins in Lake Baikal amphipods (Amphipoda: Gammaridae)Cited by: 8
Author(s): Polina Drozdova, Alena Kizenko, Alexandra Saranchina, Anton Gurkov, Maria Firulyova, E. B. Govorukhina, Maxim A. Timofeyev
Software Mentions: 9
Published: about 4 years ago
10.1093/bioinformatics/btaa093
Methplotlib: analysis of modified nucleotides from nanopore sequencingCited by: 22
Author(s): Wouter De Coster, Endre Bakken Stovner, Mojca Stražišar
Software Mentions: 8
Published: over 5 years ago
10.1371/journal.pone.0163962
SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File ManipulationCited by: 1,226
Author(s): Wei Shen, Shuai Le, Yan Li, Fuquan Hu
Software Mentions: 7
Published: almost 9 years ago
10.1186/s12864-018-4704-z
OMGene: mutual improvement of gene models through optimisation of evolutionary conservationCited by: 6
Author(s): Michael Dunne, Steven Kelly
Software Mentions: 5
Published: over 7 years ago
10.1093/jhered/esaa057
Ultracontinuous Single Haplotype Genome Assemblies for the Domestic Cat (<i>Felis catus</i>) and Asian Leopard Cat (<i>Prionailurus bengalensis</i>)Cited by: 22
Author(s): Kevin R. Bredemeyer, Andrew Harris, Gang Li, Li-Jun Zhao, Nicole M. Foley, Melody Roelke‐Parker, Stephen J. O’Brien, Leslie A. Lyons, Wesley C. Warren, William J. Murphy
Software Mentions: 4
Published: over 4 years ago