Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.12688/f1000research.51477.2

https://doi.org/10.12688/f1000research.51477.2

An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebrates

Cited by: 2
Author(s): Ann Mc Cartney, Medhat Mahmoud, Michael D. Jochum, Daniel Paiva Agustinho, Barry Zorman, Ahmad Al Khleifat, Fawaz Dabbaghie, Rupesh K. Kesharwani, Moritz Smolka, Moez Dawood, Dreycey Albin, Elbay Aliyev, Hakeem Almabrazi, Ahmed Arslan, Advait Balaji, Sairam Behera, Kimberley Billingsley, Daniel Cameron, Joyjit Daw, Eric T. Dawson, Wouter De Coster, Haowei Du, Christopher Dunn, Rocio Esteban, Angad Jolly, Divya Kalra, Chunxiao Liao, Yunxi Liu, Tsung-Yu Lu, James M Havrilla, Michael M. Khayat, Maximillian G. Marin, Jean Monlong, Stephen Price, Alejandro Rafael Gener, Jimin Ren, Sagayamary Sagayaradj, Nicolae Sapoval, Claude Sinner, Daniela C. Soto, Arda Söylev, Arun Subramaniyan, Najeeb Syed, Neha Tadimeti, Pamella Tater, Pankaj Vats, Justin N. Vaughn, Kimberly Walker, Gaojianyong Wang, Qiandong Zeng, Shangzhe Zhang, Tingting Zhao, Bryce Kille, Evan Biederstedt, Mark Chaisson, Adam C. English, Zev Kronenberg, Todd J. Treangen, Timothy Hefferon, Chen-Shan Chin, Ben Busby, Fritz J. Sedlazeck
Published: about 3 years ago

Software Mentions 14

cran: ART
Aligned Rank Transform for Nonparametric Factorial Analysis
Papers that mentioned: 580
cran: fasta
Fast Adaptive Shrinkage/Thresholding Algorithm
Papers that mentioned: 848
cran: interval
Weighted Logrank Tests and NPMLE for Interval Censored Data
Papers that mentioned: 3
pypi: browser
A package to prevent Dependency Confusion attacks against Yandex.
Papers that mentioned: 2,125
pypi: bwa
Bwa: Simple Notification Sender(Discord, Slack, Gmail and Telegram)
Papers that mentioned: 989
pypi: cuteSV
Long-read-based human genomic structural variation detection with cuteSV
Papers that mentioned: 4
pypi: fasta
The fasta python package enables you to deal with biological sequence files easily.
Papers that mentioned: 848
pypi: interval
Python interval and interval set implementation
Papers that mentioned: 3
pypi: mappy
Minimap2 python binding
Papers that mentioned: 3
pypi: NanoPlot
Plotting suite for Oxford Nanopore sequencing data and alignments
Papers that mentioned: 90
pypi: NucDiff
NucDiff locates and categorizes differences between two closely related nucleotide sequences.
Papers that mentioned: 8
pypi: pyfaidx
pyfaidx: efficient pythonic random access to fasta subsequences
Papers that mentioned: 7
pypi: pysam
Package for reading, manipulating, and writing genomic data
Papers that mentioned: 130
pypi: Truvari
Structural variant comparison tool for VCFs
Papers that mentioned: 9