Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: NucDiff

https://packages.ecosyste.ms/registries/pypi.org/packages/NucDiff

NucDiff locates and categorizes differences between two closely related nucleotide sequences.
4 versions
Latest release: over 4 years ago
28 downloads last month

Papers Mentioning NucDiff 8

10.12688/f1000research.51477.2

An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebrates
Cited by: 2
Author(s): Ann Mc Cartney, Medhat Mahmoud, Michael D. Jochum, Daniel Paiva Agustinho, Barry Zorman, Ahmad Al Khleifat, Fawaz Dabbaghie, Rupesh K. Kesharwani, Moritz Smolka, Moez Dawood, Dreycey Albin, Elbay Aliyev, Hakeem Almabrazi, Ahmed Arslan, Advait Balaji, Sairam Behera, Kimberley Billingsley, Daniel Cameron, Joyjit Daw, Eric T. Dawson, Wouter De Coster, Haowei Du, Christopher Dunn, Rocio Esteban, Angad Jolly, Divya Kalra, Chunxiao Liao, Yunxi Liu, Tsung-Yu Lu, James M Havrilla, Michael M. Khayat, Maximillian G. Marin, Jean Monlong, Stephen Price, Alejandro Rafael Gener, Jimin Ren, Sagayamary Sagayaradj, Nicolae Sapoval, Claude Sinner, Daniela C. Soto, Arda Söylev, Arun Subramaniyan, Najeeb Syed, Neha Tadimeti, Pamella Tater, Pankaj Vats, Justin N. Vaughn, Kimberly Walker, Gaojianyong Wang, Qiandong Zeng, Shangzhe Zhang, Tingting Zhao, Bryce Kille, Evan Biederstedt, Mark Chaisson, Adam C. English, Zev Kronenberg, Todd J. Treangen, Timothy Hefferon, Chen-Shan Chin, Ben Busby, Fritz J. Sedlazeck
Software Mentions: 14
Published: over 3 years ago

10.1093/gbe/evaa187

Improved Reference Genome Uncovers Novel Sex-Linked Regions in the Guppy (Poecilia reticulata)
Cited by: 29
Author(s): Bonnie A. Fraser, James R. Whiting, Josephine R. Paris, Cameron J. Weadick, Paul J. Parsons, Deborah Charlesworth, Roberta Bergero, Felix Bemm, Maria Hoffmann, Verena A. Kottler, Chang Liu, Christine Dreyer, Detlef Weigel
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0216233

A chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene set
Cited by: 37
Author(s): Boas Pucker, Daniela Holtgräwe, Kai Bernd Stadermann, Karl Frey, Bruno Huettel, Richard Reinhardt, Bernd Weißhaar
Software Mentions: 3
Published: over 5 years ago

10.1186/s12859-017-1748-z

NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences
Cited by: 42
Author(s): Ksenia Khelik, Karin Lagesen, Geir Kjetil Sandve, Torbjørn Rognes, Alexander Johan Nederbragt
Software Mentions: 3
Published: over 7 years ago

10.1186/s12859-020-3414-0

NucBreak: location of structural errors in a genome assembly by using paired-end Illumina reads
Cited by: 5
Author(s): Ksenia Khelik, Geir Kjetil Sandve, Alexander Johan Nederbragt, Torbjørn Rognes
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12864-019-6388-4

Whole genome sequencing of Borrelia miyamotoi isolate Izh-4: reference for a complex bacterial genome
Cited by: 24
Author(s): Konstantin V. Kuleshov, Gabriele Margos, Volker Fingerle, Joris Koetsveld, Irina A. Goptar, Mikhail L. Markelov, Nadezhda M. Kolyasnikova, Denis S. Sarksyan, Nina P. Kirdyashkina, German A. Shipulin, Joppe W. Hovius, Alexander E. Platonov
Software Mentions: 2
Published: almost 5 years ago

10.1128/JCM.01261-19

A Complete Genome Screening Program of Clinical Methicillin-Resistant Staphylococcus aureus Isolates Identifies the Origin and Progression of a Neonatal Intensive Care Unit Outbreak
Cited by: 15
Author(s): Mitchell J. Sullivan, Deena R. Altman, Kieran I. Chacko, Brianne Ciferri, Elizabeth Webster, Theodore R. Pak, Gintaras Deikus, Martha Lewis-Sandari, Zenab Khan, Colleen Beckford, Angela Rendo, Flora Samaroo, Robert Sebra, Ramona Karam-Howlin, Tanis C. Dingle, Camille Hamula, Ali Kashif Bashir, Eric E. Schadt, Gopi Patel, Frances Wallach, Andrew Kasarskis, Kathleen Gibbs, Harm van Bakel
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-92984-5

Phenotypic and genotypic features of the Mycobacterium tuberculosis lineage 1 subgroup in central Vietnam
Cited by: 1
Author(s): Nguyen Thi Le Hang, Makoto Hijikata, Shingo Maeda, Akiko Miyabayashi, Keiko Wakabayashi, Shintaro Seto, Nguyen Thi Diem, Nguyen Thi Thanh Yen, Le Van Duc, Pham Huu Thuong, Hoang Van Huan, Nguyen Phuong Hoang, Satoshi Mitarai, Naoto Keicho, Seiya Kato
Software Mentions: 1
Published: over 3 years ago