Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: Truvari
https://packages.ecosyste.ms/registries/pypi.org/packages/Truvari
Structural variant comparison tool for VCFs
23 versions
Latest release: over 1 year ago
372 downloads last month
Papers Mentioning Truvari 9
10.12688/f1000research.51477.2
An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebratesCited by: 2
Author(s): Ann Mc Cartney, Medhat Mahmoud, Michael D. Jochum, Daniel Paiva Agustinho, Barry Zorman, Ahmad Al Khleifat, Fawaz Dabbaghie, Rupesh K. Kesharwani, Moritz Smolka, Moez Dawood, Dreycey Albin, Elbay Aliyev, Hakeem Almabrazi, Ahmed Arslan, Advait Balaji, Sairam Behera, Kimberley Billingsley, Daniel Cameron, Joyjit Daw, Eric T. Dawson, Wouter De Coster, Haowei Du, Christopher Dunn, Rocio Esteban, Angad Jolly, Divya Kalra, Chunxiao Liao, Yunxi Liu, Tsung-Yu Lu, James M Havrilla, Michael M. Khayat, Maximillian G. Marin, Jean Monlong, Stephen Price, Alejandro Rafael Gener, Jimin Ren, Sagayamary Sagayaradj, Nicolae Sapoval, Claude Sinner, Daniela C. Soto, Arda Söylev, Arun Subramaniyan, Najeeb Syed, Neha Tadimeti, Pamella Tater, Pankaj Vats, Justin N. Vaughn, Kimberly Walker, Gaojianyong Wang, Qiandong Zeng, Shangzhe Zhang, Tingting Zhao, Bryce Kille, Evan Biederstedt, Mark Chaisson, Adam C. English, Zev Kronenberg, Todd J. Treangen, Timothy Hefferon, Chen-Shan Chin, Ben Busby, Fritz J. Sedlazeck
Software Mentions: 14
Published: about 3 years ago
10.1186/s13059-021-02380-5
Samplot: a platform for structural variant visual validation and automated filteringCited by: 40
Author(s): Jonathan R Belyeu, Murad Chowdhury, Joseph Brown, Brent S. Pedersen, Michael Cormier, Aaron R. Quinlan, Ryan M. Layer
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pcbi.1009078
lra: A long read aligner for sequences and contigsCited by: 50
Author(s): Jimin Ren, Mark Chaisson
Software Mentions: 4
Published: over 3 years ago
10.1093/gigascience/giab046
NPSV: A simulation-driven approach to genotyping structural variants in whole-genome sequencing dataCited by: 4
Author(s): Michael D. Linderman, Crystal Paudyal, Musab Shakeel, William L. Kelley, Ali Kashif Bashir, Bruce D. Gelb
Software Mentions: 4
Published: over 3 years ago
10.1038/s41436-021-01126-9
Genome-wide investigation identifies a rare copy-number variant burden associated with human spina bifidaCited by: 7
Author(s): Paul Wolujewicz, Vanessa Aguiar‐Pulido, Alice AbdelAleem, Vidya Nair, Gaurav Thareja, Karsten Suhre, Gary M. Shaw, Richard H. Finnell, Olivier Elemento, M. Elizabeth Ross
Software Mentions: 3
Published: over 3 years ago
10.1186/s13059-020-02107-y
Long-read-based human genomic structural variation detection with cuteSVCited by: 128
Author(s): Tao Jiang, Yongzhuang Liu, Yue Jiang, Junyi Li, Yan Gao, Zhe Cui, Yadong Liu, Bo Liu, Yadong Wang
Software Mentions: 3
Published: over 4 years ago
10.1038/s41431-020-00770-0
Long-read trio sequencing of individuals with unsolved intellectual disabilityCited by: 23
Author(s): Marc Pauper, Erdi Küçük, Aaron M. Wenger, Shreyasee Chakraborty, Primo Baybayan, Michael Kwint, Bart van der Sanden, Marcel Nelen, Ronny Derks, Han G. Brunner, Alexander Hoischen, Lisenka E L M Vissers, Christian Gilissen
Software Mentions: 3
Published: almost 4 years ago
10.1093/gigascience/giaa145
Parliament2: Accurate structural variant calling at scaleCited by: 46
Author(s): Samantha Zarate, Andrew Carroll, Medhat Mahmoud, Olga Krasheninina, Goo Jun, William Salerno, Michael C. Schatz, Eric Boerwinkle, Richard A. Gibbs, Fritz J. Sedlazeck
Software Mentions: 2
Published: almost 4 years ago
10.3389/fgene.2021.636239
stLFRsv: A Germline Structural Variant Analysis Pipeline Using Co-barcoded ReadsCited by: 4
Author(s): Junfu Guo, Chao Shi, Xi Chen, Ou Wang, Ping Liu, Huanming Yang, Xun Xu, Wenwei Zhang, Hongmei Zhu
Software Mentions: 2
Published: over 3 years ago