Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: cuteSV
https://packages.ecosyste.ms/registries/pypi.org/packages/cuteSV
Long-read-based human genomic structural variation detection with cuteSV
18 versions
Latest release: over 1 year ago
127 downloads last month
Papers Mentioning cuteSV 4
10.12688/f1000research.51477.2
An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebratesCited by: 2
Author(s): Ann Mc Cartney, Medhat Mahmoud, Michael D. Jochum, Daniel Paiva Agustinho, Barry Zorman, Ahmad Al Khleifat, Fawaz Dabbaghie, Rupesh K. Kesharwani, Moritz Smolka, Moez Dawood, Dreycey Albin, Elbay Aliyev, Hakeem Almabrazi, Ahmed Arslan, Advait Balaji, Sairam Behera, Kimberley Billingsley, Daniel Cameron, Joyjit Daw, Eric T. Dawson, Wouter De Coster, Haowei Du, Christopher Dunn, Rocio Esteban, Angad Jolly, Divya Kalra, Chunxiao Liao, Yunxi Liu, Tsung-Yu Lu, James M Havrilla, Michael M. Khayat, Maximillian G. Marin, Jean Monlong, Stephen Price, Alejandro Rafael Gener, Jimin Ren, Sagayamary Sagayaradj, Nicolae Sapoval, Claude Sinner, Daniela C. Soto, Arda Söylev, Arun Subramaniyan, Najeeb Syed, Neha Tadimeti, Pamella Tater, Pankaj Vats, Justin N. Vaughn, Kimberly Walker, Gaojianyong Wang, Qiandong Zeng, Shangzhe Zhang, Tingting Zhao, Bryce Kille, Evan Biederstedt, Mark Chaisson, Adam C. English, Zev Kronenberg, Todd J. Treangen, Timothy Hefferon, Chen-Shan Chin, Ben Busby, Fritz J. Sedlazeck
Software Mentions: 14
Published: about 3 years ago
10.1371/journal.pcbi.1009078
lra: A long read aligner for sequences and contigsCited by: 50
Author(s): Jimin Ren, Mark Chaisson
Software Mentions: 4
Published: over 3 years ago
10.3389/fgene.2021.731515
PanSVR: Pan-Genome Augmented Short Read Realignment for Sensitive Detection of Structural VariationsCited by: 1
Author(s): Gaoyang Li, Tao Jiang, Junyi Li, Yadong Wang
Software Mentions: 4
Published: about 3 years ago
10.1186/s13059-020-02107-y
Long-read-based human genomic structural variation detection with cuteSVCited by: 128
Author(s): Tao Jiang, Yongzhuang Liu, Yue Jiang, Junyi Li, Yan Gao, Zhe Cui, Yadong Liu, Bo Liu, Yadong Wang
Software Mentions: 3
Published: about 4 years ago