Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/gigascience/giaa010

https://doi.org/10.1093/gigascience/giaa010

Interpretable and accurate prediction models for metagenomics data

Cited by: 29
Author(s): Edi Prifti, Yann Chevaleyre, Blaise Hanczar, Eugeni Belda, Antoine Danchin, Karine Clément, Jean-Daniel Zucker
Published: over 4 years ago

Software Mentions 18

bioconductor: BioQC
Detect tissue heterogeneity in expression profiles with gene sets
Papers that mentioned: 7
bioconductor: ExperimentHub
Client to access ExperimentHub resources
Papers that mentioned: 11
cran: doRNG
Generic Reproducible Parallel Backend for 'foreach' Loops
Papers that mentioned: 6
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: glmnet
Lasso and Elastic-Net Regularized Generalized Linear Models
Papers that mentioned: 1,607
cran: gridExtra
Miscellaneous Functions for "Grid" Graphics
Papers that mentioned: 298
cran: gtools
Various R Programming Tools
Papers that mentioned: 60
cran: kernlab
Kernel-Based Machine Learning Lab
Papers that mentioned: 157
cran: plyr
Tools for Splitting, Applying and Combining Data
Papers that mentioned: 468
cran: pROC
Display and Analyze ROC Curves
Papers that mentioned: 1,740
cran: randomForest
Breiman and Cutler's Random Forests for Classification and Regression
Papers that mentioned: 1,447
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
cran: viridis
Colorblind-Friendly Color Maps for R
Papers that mentioned: 92
pypi: glmnet
Python wrapper for glmnet
Papers that mentioned: 1,607
pypi: grid
Volumetric data module
Papers that mentioned: 137
pypi: plyr
UNKNOWN
Papers that mentioned: 468
pypi: viridis
Tree data structures and algorithms
Papers that mentioned: 92