Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.15252/emmm.202012640

https://doi.org/10.15252/emmm.202012640

Mithramycin induces promoter reprogramming and differentiation of rhabdoid tumor

Cited by: 7
Author(s): Maggie H. Chassé, Benjamin K. Johnson, Elissa A. Boguslawski, Katie M. Sorensen, Jessica E Rosien, Min H. Kang, C. Patrick Reynolds, Lyong Heo, Zachary Madaj, Ian Beddows, Gabrielle E. Foxa, Susan M. Kitchen-Goosen, Bart O. Williams, Timothy J. Triche, Patrick J. Grohar
Published: almost 4 years ago

Software Mentions 18

bioconductor: compartmap
Higher-order chromatin domain inference in single cells from scRNA-seq and scATAC-seq
Papers that mentioned: 3
bioconductor: csaw
ChIP-Seq Analysis with Windows
Papers that mentioned: 29
bioconductor: EDASeq
Exploratory Data Analysis and Normalization for RNA-Seq
Papers that mentioned: 61
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: fgsea
Fast Gene Set Enrichment Analysis
Papers that mentioned: 150
bioconductor: quantro
A test for when to use quantile normalization
Papers that mentioned: 6
bioconductor: RaggedExperiment
Representation of Sparse Experiments and Assays Across Samples
Papers that mentioned: 1
bioconductor: RUVSeq
Remove Unwanted Variation from RNA-Seq Data
Papers that mentioned: 91
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
cran: preseqR
Predicting Species Accumulation Curves
Papers that mentioned: 4
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
cran: viridis
Colorblind-Friendly Color Maps for R
Papers that mentioned: 92
pypi: bwa
Bwa: Simple Notification Sender(Discord, Slack, Gmail and Telegram)
Papers that mentioned: 989
pypi: gsea
Papers that mentioned: 28
pypi: homer
Configuration manager for network devices
Papers that mentioned: 26
pypi: stats
Calculator-style statistical functions
Papers that mentioned: 3,105
pypi: viridis
Tree data structures and algorithms
Papers that mentioned: 92