pypi: homer | Projects | Ecosyste.ms: Papers

10.15252/emmm.202012640

Mithramycin induces promoter reprogramming and differentiation of rhabdoid tumor
Cited by: 7
Author(s): Maggie H. Chassé, Benjamin K. Johnson, Elissa A. Boguslawski, Katie M. Sorensen, Jessica E Rosien, Min H. Kang, C. Patrick Reynolds, Lyong Heo, Zachary Madaj, Ian Beddows, Gabrielle E. Foxa, Susan M. Kitchen-Goosen, Bart O. Williams, Timothy J. Triche, Patrick J. Grohar
Software Mentions: 18
Published: almost 4 years ago

10.26508/lsa.202000766

Egr2 and 3 control inflammation, but maintain homeostasis, of PD-1<sup>high</sup> memory phenotype CD4 T cells
Cited by: 6
Author(s): Alistair L. J. Symonds, Wei Zheng, Tizong Miao, Ang Li, Tieshang Wang, Ruth Kiome, Xiaofeng Hou, Suling Li, Ping Wang
Software Mentions: 15
Published: over 4 years ago

10.1186/s13059-021-02360-9

Role of epigenetics in unicellular to multicellular transition in Dictyostelium
Cited by: 8
Author(s): Simon Yuan Wang, Elizabeth A. Pollina, I‐Hao Wang, Lindsay K. Pino, Henry L. Bushnell, Ken Takashima, Colette Fritsche, George Sabin, Benjamin A. Garcia, Paul L. Greer, Eric Lieberman Greer
Software Mentions: 10
Published: over 3 years ago

10.1002/mc.23147

Loss of myeloid‐specific lamin A/C drives lung metastasis through Gfi‐1 and C/EBPε‐mediated granulocytic differentiation
Cited by: 3
Author(s): Hiroki Ishii, Woo‐Yong Park, Jae-Young So, Skyler Kuhn, Vishal N. Kopardé, Yanli Pang, Tim F. Greten, M. Christine Hollander, Li Yang
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.ppat.1007634

The ETS transcription factor ELF1 regulates a broadly antiviral program distinct from the type I interferon response
Cited by: 49
Author(s): Leon Louis Seifert, Clara Si, Debjani Saha, Mohammad Sadic, Maren de Vries, Sarah Ballentine, Aaron Briley, Guojun Wang, Ana M. Valero-Jimenez, Adil Mohamed, Uwe Schaefer, Hong M. Moulton, Adolfo Garcı́a-Sastre, Shashank Tripathi, Brad R. Rosenberg, Meike Dittmann
Software Mentions: 6
Published: about 5 years ago

10.1038/sdata.2016.8

Transcriptome regulation and chromatin occupancy by E2F3 and MYC in mice
Cited by: 8
Author(s): Xing Tang, Huayang Liu, Arunima Srivastava, Thierry Pécot, Zhong Chen, Qianben Wang, Kun Huang, Maria Teresa Sáenz-Robles, Paul G. Cantalupo, James M. Pipas, Gustavo Leone
Software Mentions: 6
Published: almost 9 years ago

10.7554/eLife.35368

Epigenetic drift of H3K27me3 in aging links glycolysis to healthy longevity in Drosophila
Cited by: 92
Author(s): Zaijun Ma, Hui Wang, Yuping Cai, Han Wang, Kongyan Niu, Xiaofen Wu, Huanhuan Ma, Yun Yang, Wenhua Tong, Feng Liu, Zhandong Liu, Yaoyang Zhang, Rui Li, Zheng‐Jiang Zhu, Nan Liu
Software Mentions: 6
Published: over 6 years ago

10.7554/eLife.24133

Repeated losses of PRDM9-directed recombination despite the conservation of PRDM9 across vertebrates
Cited by: 103
Author(s): Zachary Baker, Molly Schumer, Yuki Haba, Lisa Bashkirova, C. D. Holland, Gil G. Rosenthal, Molly Przeworski
Software Mentions: 6
Published: over 7 years ago

10.1038/s41422-020-0385-7

Stabilization of heterochromatin by CLOCK promotes stem cell rejuvenation and cartilage regeneration
Cited by: 51
Author(s): Chuqian Liang, Zunpeng Liu, Moshi Song, Wei Li, Zeming Wu, Zehua Wang, Qiaoran Wang, Si Wang, Yan Ke, Liang Sun, Tomoaki Hishida, Yanning Cai, Juan Carlos Izpisúa Belmonte, Pedro Guillén, Piu Chan, Qi Zhou, Weiqi Zhang, Jing Qu, Guanghui Liu
Software Mentions: 5
Published: over 4 years ago

10.26508/lsa.202000864

Different mutant RUNX1 oncoproteins program alternate haematopoietic differentiation trajectories
Cited by: 12
Author(s): Sophie G Kellaway, Peter Keane, Benjamin Edginton-White, Kakkad Regha, Ella Kennett, Constanze Bonifer
Software Mentions: 5
Published: almost 4 years ago

10.1186/s13072-018-0230-0

CpG binding protein (CFP1) occupies open chromatin regions of active genes, including enhancers and non-CpG islands
Cited by: 19
Author(s): Louie N. van de Lagemaat, Maria Flenley, Magnus Lynch, David Garrick, Simon R. Tomlinson, Kamil R. Kranc, Douglas Vernimmen
Software Mentions: 5
Published: about 6 years ago

10.1002/1878-0261.12314

Induced <scp>PTF</scp> 1a expression in pancreatic ductal adenocarcinoma cells activates acinar gene networks, reduces tumorigenic properties, and sensitizes cells to gemcitabine treatment
Cited by: 17
Author(s): Brad L. Jakubison, Patrick G. Schweickert, Sarah E. Moser, Yi Yang, Hongyu Gao, Kathleen M. Scully, Pamela Itkin-Ansari, Yunlong Liu, Stephen F. Konieczny
Software Mentions: 5
Published: over 6 years ago

10.3390/cancers11010025

Stemness, Pluripotentiality, and Wnt Antagonism: sFRP4, a Wnt antagonist Mediates Pluripotency and Stemness in Glioblastoma
Cited by: 51
Author(s): G Bhuvanalakshmi, Naisarg Gamit, Manasi Patil, Frank Arfuso, Gautam Sethi, Arun Dharmarajan, Alan Prem Kumar, Sudha Warrier
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41422-020-0281-1

Refined spatial temporal epigenomic profiling reveals intrinsic connection between PRDM9-mediated H3K4me3 and the fate of double-stranded breaks
Cited by: 34
Author(s): Yao Chen, Ruitu Lyu, Bowen Rong, Yuxuan Zheng, Zhen Lin, Ruofei Dai, Xi Zhang, Nannan Xie, Siqing Wang, Fuchou Tang, Fei Lan, Ming-Han Tong
Software Mentions: 4
Published: almost 5 years ago

10.1002/1878-0261.12503

HDAC7‐mediated control of tumour microenvironment maintains proliferative and stemness competence of human mammary epithelial cells
Cited by: 27
Author(s): Valentina Cutano, Eros Di Giorgio, Martina Minisini, Raffaella Picco, Emiliano Dalla, Claudio Brancolini
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms21124453

YBX1 Indirectly Targets Heterochromatin-Repressed Inflammatory Response-Related Apoptosis Genes through Regulating CBX5 mRNA
Cited by: 7
Author(s): Andreas Kloetgen, Sujitha Duggimpudi, Konstantin Schuschel, Kebria Hezaveh, Daniel Picard, Heiner Schaal, Marc Remke, Jan‐Henning Klusmann, Arndt Borkhardt, Alice C. McHardy, Jessica I. Hoell
Software Mentions: 4
Published: over 4 years ago

10.15252/embr.201948155

Redistribution of <scp>EZH</scp> 2 promotes malignant phenotypes by rewiring developmental programmes
Cited by: 9
Author(s): Thomas Mortimer, Elanor N. Wainwright, Harshil Patel, Bernard Siow, Zane Jaunmuktane, Sebastian Brandner, Paola Scaffidi
Software Mentions: 3
Published: about 5 years ago

10.1242/bio.031245

KDM5B decommissions the H3K4 methylation landscape of self-renewal genes during trophoblast stem cell differentiation
Cited by: 18
Author(s): Jian Xu, Benjamin L. Kidder
Software Mentions: 3
Published: over 6 years ago

10.1186/s13148-019-0699-9

Rheumatoid arthritis-relevant DNA methylation changes identified in ACPA-positive asymptomatic individuals using methylome capture sequencing
Cited by: 14
Author(s): Xiaojian Shao, Marie Hudson, Inés Colmegna, Celia Greenwood, Marvin J. Fritzler, Philip Awadalla, Tomi Pastinen, Sasha Bernatsky
Software Mentions: 3
Published: over 5 years ago

10.18632/oncotarget.13271

Transcription factor LSF-DNMT1 complex dissociation by FQI1 leads to aberrant DNA methylation and gene expression
Cited by: 15
Author(s): Hang Gyeong Chin, V. K. Chaithanya Ponnaluri, Guoqiang Zhang, Pierre‐Olivier Estève, Scott E. Schaus, Ulla Hansen, Sriharsa Pradhan
Software Mentions: 2
Published: about 8 years ago

10.1002/1878-0261.12833

5‐Hydroxymethylcytosine signature in circulating cell‐free DNA as a potential diagnostic factor for early‐stage colorectal cancer and precancerous adenoma
Cited by: 10
Author(s): Zewen Xiao, Wendy Wu, Chunlong Wu, Man Li, Fuming Sun, Zheng Lu, Gao-Jing Liu, Xiaoling Li, Zhiyuan Yun, Jingling Tang, Yang Yu, Sai Luo, Wenji Sun, Feng Xiao, Qian Cheng, Ting Xue, Shuangxiu Wu, Jing Tao
Software Mentions: 2
Published: about 4 years ago

10.3389/fpls.2021.634679

Rapid and Low-Input Profiling of Histone Marks in Plants Using Nucleus CUT&Tag
Cited by: 16
Author(s): Weizhi Ouyang, Xiwen Zhang, Yong Peng, Qing Zhang, Zhilin Cao, Guoliang Li, Xingwang Li
Software Mentions: 2
Published: over 3 years ago

10.1111/jcmm.15898

Down‐regulation of EOMES drives T‐cell exhaustion via abolishing EOMES‐mediated repression of inhibitory receptors of T cells in liver cancer
Cited by: 7
Author(s): Hongwei He, Yong Yi, Xiaoyan Cai, Jiaxing Wang, Xiaochun Ni, Yi‐Peng Fu, Shuang–Jian Qiu
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-83431-6

Retinoic acid regulates erythropoietin production cooperatively with hypoxia-inducible factors in human iPSC-derived erythropoietin-producing cells
Cited by: 1
Author(s): Naoko Katagiri, Hirofumi Hitomi, Shin-Ichi Mae, Maki Kotaka, Lei Li, Takuya Yamamoto, Akira Nishiyama, Kenji Osafune
Software Mentions: 2
Published: almost 4 years ago

10.1186/1471-2164-15-620

The transcriptional landscape of mouse beta cells compared to human beta cells reveals notable species differences in long non-coding RNA and protein-coding gene expression
Cited by: 236
Author(s): Chris Benner, Talitha van der Meulen, Elena Cacéres, Kristof Tigyi, Cynthia J. Donaldson, Mark O. Huising
Software Mentions: 2
Published: over 10 years ago

10.3389/fcell.2021.670528

Comprehensive Analysis of the Transcriptome-Wide m6A Methylome in Pterygium by MeRIP Sequencing
Cited by: 4
Author(s): Yaping Jiang, Xin Zhang, Xiaoyan Zhang, Kun Zhao, Jing Zhang, Chuanxi Yang, Yihui Chen
Software Mentions: 1
Published: over 3 years ago

Ecosyste.ms: Papers

Projects: pypi: homer

Papers Mentioning homer 26