Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-021-02360-9

https://doi.org/10.1186/s13059-021-02360-9

Cited by: 8
Author(s): Simon Yuan Wang, Elizabeth A. Pollina, I‐Hao Wang, Lindsay K. Pino, Henry L. Bushnell, Ken Takashima, Colette Fritsche, George Sabin, Benjamin A. Garcia, Paul L. Greer, Eric Lieberman Greer
Published: about 3 years ago

Software Mentions 10

bioconductor: clusterProfiler

A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223

cran: prism

Access Data from the Oregon State Prism Climate Project
Papers that mentioned: 301

pypi: excel

This package name is reserved by Microsoft Corporation
Papers that mentioned: 2,995

pypi: homer

Configuration manager for network devices
Papers that mentioned: 26

pypi: kallisto

The Kallisto software enables the efficient calculation of atomic features that can be used within a quantitative structure-activity relationship (QSAR) approach. Furthermore, several modelling helpers are implemented.
Papers that mentioned: 307

pypi: MACS2

Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203

pypi: multiqc

Create aggregate bioinformatics analysis reports across many samples and tools
Papers that mentioned: 37

pypi: picard

The next generation MusicBrainz tagger
Papers that mentioned: 243

pypi: prism

PRISM: An alternative to MCMC for rapid analysis of models
Papers that mentioned: 301

pypi: sleuth

Papers that mentioned: 59