Papers: 10.26508/lsa.202000766
https://doi.org/10.26508/lsa.202000766
Egr2 and 3 control inflammation, but maintain homeostasis, of PD-1<sup>high</sup> memory phenotype CD4 T cells
Cited by: 6
Author(s): Alistair L. J. Symonds, Wei Zheng, Tizong Miao, Ang Li, Tieshang Wang, Ruth Kiome, Xiaofeng Hou, Suling Li, Ping Wang
Published: about 5 years ago
Software Mentions 15
bioconductor: BiocParallel
Bioconductor facilities for parallel evaluationPapers that mentioned: 30
Very Likely Science (100)
bioconductor: ChIPpeakAnno
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome rangesPapers that mentioned: 145
Very Likely Science (76)
bioconductor: ChIPseeker
ChIPseeker for ChIP peak Annotation, Comparison, and VisualizationPapers that mentioned: 161
Very Likely Science (100)
bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics dataPapers that mentioned: 2,223
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bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
Very Likely Science (100)
bioconductor: GenomicAlignments
Representation and manipulation of short genomic alignmentsPapers that mentioned: 134
Very Likely Science (90)
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Very Likely Science (100)
bioconductor: Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file importPapers that mentioned: 138
Very Likely Science (90)
bioconductor: vsn
Variance stabilization and calibration for microarray dataPapers that mentioned: 91
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cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of GraphicsPapers that mentioned: 11,441
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cran: msigdbr
MSigDB Gene Sets for Multiple Organisms in a Tidy Data FormatPapers that mentioned: 17
Very Likely Science (95)
Very Likely Science (90)