Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.26508/lsa.202000766
https://doi.org/10.26508/lsa.202000766
Egr2 and 3 control inflammation, but maintain homeostasis, of PD-1<sup>high</sup> memory phenotype CD4 T cells
Cited by: 6
Author(s): Alistair L. J. Symonds, Wei Zheng, Tizong Miao, Ang Li, Tieshang Wang, Ruth Kiome, Xiaofeng Hou, Suling Li, Ping Wang
Published: over 4 years ago
Software Mentions 15
bioconductor: BiocParallel
Bioconductor facilities for parallel evaluationPapers that mentioned: 30
bioconductor: ChIPpeakAnno
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome rangesPapers that mentioned: 145
bioconductor: ChIPseeker
ChIPseeker for ChIP peak Annotation, Comparison, and VisualizationPapers that mentioned: 161
bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics dataPapers that mentioned: 2,223
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
bioconductor: GenomicAlignments
Representation and manipulation of short genomic alignmentsPapers that mentioned: 134
bioconductor: Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file importPapers that mentioned: 138
bioconductor: vsn
Variance stabilization and calibration for microarray dataPapers that mentioned: 91
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of GraphicsPapers that mentioned: 11,441
cran: msigdbr
MSigDB Gene Sets for Multiple Organisms in a Tidy Data FormatPapers that mentioned: 17