Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: msigdbr
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/msigdbr
MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format
7 versions
Latest release: over 2 years ago
13 dependent packages
4,901 downloads last month
Papers Mentioning msigdbr 17
10.12688/f1000research.20843.1
Creating and sharing reproducible research code the workflowr wayCited by: 51
Author(s): John Blischak, Peter Carbonetto, Matthew Stephens
Software Mentions: 22
Published: almost 5 years ago
10.3390/cancers12040948
Reconstruction of Ewing Sarcoma Developmental Context from Mass-Scale Transcriptomics Reveals Characteristics of EWSR1-FLI1 PermissibilityCited by: 23
Author(s): Henry E. Miller, Aparna Gorthi, Nicklas Bassani, Liesl A. Lawrence, Brian S. Iskra, Alexander J.R. Bishop
Software Mentions: 19
Published: over 4 years ago
10.26508/lsa.202000766
Egr2 and 3 control inflammation, but maintain homeostasis, of PD-1<sup>high</sup> memory phenotype CD4 T cellsCited by: 6
Author(s): Alistair L. J. Symonds, Wei Zheng, Tizong Miao, Ang Li, Tieshang Wang, Ruth Kiome, Xiaofeng Hou, Suling Li, Ping Wang
Software Mentions: 15
Published: about 4 years ago
10.3390/cancers13163922
Transcriptomic Profiling Reveals Novel Candidate Genes and Signalling Programs in Breast Cancer Quiescence and DormancyCited by: 4
Author(s): Lewis A. Quayle, Amy Spicer, Penelope D. Ottewell, Ingunn Holen
Software Mentions: 13
Published: about 3 years ago
10.3389/fimmu.2021.709493
Development of a Novel Immune Infiltration-Based Gene Signature to Predict Prognosis and Immunotherapy Response of Patients With Cervical CancerCited by: 12
Author(s): Sihui Yu, Xi Li, Jiawen Zhang, Sufang Wu
Software Mentions: 13
Published: about 3 years ago
10.3390/cancers13174311
Landscape of Bone Marrow Metastasis in Human Neuroblastoma Unraveled by Transcriptomics and Deep Multiplex ImagingCited by: 15
Author(s): Daria Lazic, Florian Kromp, Fikret Rifatbegovic, Peter Repiščák, Michael Kirr, Filip Mívalt, Florian Halbritter, Marie Bernkopf, Andrea Bileck, Marek Ussowicz, Inge M. Ambros, Peter F. Ambros, Christopher Gerner, Ruth Ladenstein, Christian Ostalecki, Sabine Taschner‐Mandl
Software Mentions: 13
Published: about 3 years ago
10.3390/cells10050977
Identification of 15 lncRNAs Signature for Predicting Survival Benefit of Advanced Melanoma Patients Treated with Anti-PD-1 MonotherapyCited by: 22
Author(s): Jianguo Zhou, Bo Liang, Jianguo Liu, Sanli Jin, Sisi He, Benjamin Frey, Ning Gu, Rainer Fietkau, Markus Hecht, Hu Ma, Udo S. Gaipl
Software Mentions: 10
Published: over 3 years ago
10.7554/eLife.62210
Proteomic analysis of young and old mouse hematopoietic stem cells and their progenitors reveals post-transcriptional regulation in stem cellsCited by: 18
Author(s): Balyn W. Zaro, Joseph J. Noh, Victoria L. Mascetti, János Demeter, Benson M. George, Monika Żukowska, Gunsagar S. Gulati, Rahul Sinha, Ryan A. Flynn, Allison Banuelos, Allison Zhang, Adam C. Wilkinson, Peter K. Jackson, Irving L. Weissman
Software Mentions: 10
Published: almost 4 years ago
10.3390/ijms22179426
Gravitational Force—Induced 3D Chromosomal Conformational Changes Are Associated with Rapid Transcriptional Response in Human T CellsCited by: 14
Author(s): Christian Vahlensieck, Cora S. Thiel, Ye Zhang, Andreas Huge, Oliver Ullrich
Software Mentions: 8
Published: about 3 years ago
10.1186/s12864-021-07509-1
Transcriptome analyses of 7-day-old zebrafish larvae possessing a familial Alzheimer’s disease-like mutation in psen1 indicate effects on oxidative phosphorylation, ECM and MCM functions, and iron homeostasisCited by: 7
Author(s): Yang Dong, Morgan Newman, Stephen Pederson, Karissa Barthelson, Nhi Hin, Michael Lardelli
Software Mentions: 7
Published: over 3 years ago
10.3390/cells10071690
Characterisation of Neurospheres-Derived Cells from Human Olfactory EpitheliumCited by: 1
Author(s): E. A. Zelenova, Nikolay Kondratyev, Т. В. Лежейко, G. Yu. Tsarapkin, A. I. Kryukov, Alexander E Kishinevsky, A.S. Tovmasyan, Ekaterina Momotyuk, Э. Б. Дашинимаев, В. Е. Голимбет
Software Mentions: 7
Published: about 3 years ago
10.3389/fgene.2021.639254
Identification and Validation of a Novel Immune-Related Four-lncRNA Signature for Lung AdenocarcinomaCited by: 14
Author(s): Jixin Wang, Xiangjun Yin, Yin‐Qiang Zhang, Xuming Ji
Software Mentions: 6
Published: over 3 years ago
10.1371/journal.pgen.1009140
Drosophila Caliban preserves intestinal homeostasis and lifespan through regulating mitochondrial dynamics and redox state in enterocytesCited by: 12
Author(s): Zhaoxia Dai, Dong Liu, Xiao Du, Ying Ge, Deborah A. Hursh, Xiaolin Bi
Software Mentions: 5
Published: almost 4 years ago
10.1042/BSR20204301
Construction of a five-gene prognostic model based on immune-related genes for the prediction of survival in pancreatic cancerCited by: 12
Author(s): Bo Liu, Tingting Fu, Ping He, Changsheng Du, Ke Xu
Software Mentions: 5
Published: about 3 years ago
10.3389/fgene.2020.586658
Cardiac Regeneration and Tumor Growth—What Do They Have in Common?Cited by: 1
Author(s): Severin Dicks, Lonny Jürgensen, Florian Leuschner, David Hassel, Geoffroy Andrieux, Melanie Boerries
Software Mentions: 3
Published: almost 4 years ago
10.3389/fphar.2020.00630
Early Response to the Plant Toxin Stenodactylin in Acute Myeloid Leukemia Cells Involves Inflammatory and Apoptotic SignalingCited by: 8
Author(s): Daniele Mercatelli, Massimo Bortolotti, Vibeke Andresen, André Sulen, Letizia Polito, Bjørn Tore Gjertsen, Andrea Bolognesi
Software Mentions: 2
Published: over 4 years ago
10.15252/embr.202050893
PIDDosome‐induced p53‐dependent ploidy restriction facilitates hepatocarcinogenesisCited by: 28
Author(s): Valentina C. Sladky, Katja Knapp, Tamás Szabó, Vincent Zoran Braun, Laura Bongiovanni, Hilda van den Bos, Diana C. J. Spierings, Bart Westendorp, Ana Curinha, Tatjana Stojaković, Hubert Scharnagl, Gerald Timelthaler, Kaoru Tsuchia, Matthias Pinter, Georg Semmler, Floris Foijer, Alain de Bruin, Thomas Reiberger, Nataliya Rohr-Udilova, Andreas Villunger
Software Mentions: 2
Published: almost 4 years ago