Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3390/ijms22179426

https://doi.org/10.3390/ijms22179426

Gravitational Force—Induced 3D Chromosomal Conformational Changes Are Associated with Rapid Transcriptional Response in Human T Cells

Cited by: 14
Author(s): Christian Vahlensieck, Cora S. Thiel, Ye Zhang, Andreas Huge, Oliver Ullrich
Published: about 3 years ago

Software Mentions 8

bioconductor: arrayQualityMetrics
Quality metrics report for microarray data sets
Papers that mentioned: 190
bioconductor: fgsea
Fast Gene Set Enrichment Analysis
Papers that mentioned: 150
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: oligo
Preprocessing tools for oligonucleotide arrays
Papers that mentioned: 204
cran: msigdbr
MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format
Papers that mentioned: 17
pypi: biomart
Python API that consumes the biomart webservice
Papers that mentioned: 46
pypi: HiCExplorer
Set of programs to process, analyze and visualize Hi-C data
Papers that mentioned: 33
pypi: oligo
UNOFFICIAL Python client for i-DE
Papers that mentioned: 204