Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.62210

https://doi.org/10.7554/eLife.62210

Cited by: 18
Author(s): Balyn W. Zaro, Joseph J. Noh, Victoria L. Mascetti, János Demeter, Benson M. George, Monika Żukowska, Gunsagar S. Gulati, Rahul Sinha, Ryan A. Flynn, Allison Banuelos, Allison Zhang, Adam C. Wilkinson, Peter K. Jackson, Irving L. Weissman
Published: over 3 years ago

Software Mentions 10

bioconductor: biomaRt
Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446
bioconductor: GSVA
Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893
cran: ggfortify
Data Visualization Tools for Statistical Analysis Results
Papers that mentioned: 132
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: Metrics
Evaluation Metrics for Machine Learning
Papers that mentioned: 56
cran: msigdbr
MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format
Papers that mentioned: 17
pypi: GSVA
Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893
pypi: matplotlib
Python plotting package
Papers that mentioned: 1,045
pypi: pca
pca: A Python Package for Principal Component Analysis.
Papers that mentioned: 60
pypi: scikit-learn
A set of python modules for machine learning and data mining
Papers that mentioned: 2,431