Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: Metrics
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/Metrics
Evaluation Metrics for Machine Learning
4 versions
Latest release: over 6 years ago
33 dependent packages
20,678 downloads last month
Papers Mentioning Metrics 56
10.1001/jamanetworkopen.2020.37227
Trends in US Pediatric Hospital Admissions in 2020 Compared With the Decade Before the COVID-19 PandemicCited by: 115
Author(s): Jonathan Pelletier, Jaskaran Rakkar, Alicia K. Au, Dana Y. Fuhrman, Robert S. B. Clark, Christopher M. Horvat
Software Mentions: 17
Published: almost 4 years ago
10.1186/s12888-020-02645-6
Depression, anxiety, and burnout among medical students and residents of a medical school in Nepal: a cross-sectional studyCited by: 66
Author(s): Nishan Babu Pokhrel, Ramesh Khadayat, P Tulachan
Software Mentions: 14
Published: over 4 years ago
10.1038/s41598-021-85155-z
Validating machine learning approaches for prediction of donor related complication in microsurgical breast reconstruction: a retrospective cohort studyCited by: 6
Author(s): Yujin Myung, Sungmi Jeon, Chan Yeong Heo, Eun‐Kyu Kim, Eunyoung Kang, Hee-Chul Shin, Eun Joo Yang, Jae Hoon Jeong
Software Mentions: 12
Published: almost 4 years ago
10.7554/eLife.62210
Proteomic analysis of young and old mouse hematopoietic stem cells and their progenitors reveals post-transcriptional regulation in stem cellsCited by: 18
Author(s): Balyn W. Zaro, Joseph J. Noh, Victoria L. Mascetti, János Demeter, Benson M. George, Monika Żukowska, Gunsagar S. Gulati, Rahul Sinha, Ryan A. Flynn, Allison Banuelos, Allison Zhang, Adam C. Wilkinson, Peter K. Jackson, Irving L. Weissman
Software Mentions: 10
Published: about 4 years ago
10.3390/jcm10010111
Evaluating the Effect of Topical Atropine Use for Myopia Control on Intraocular Pressure by Using Machine LearningCited by: 19
Author(s): Tzu-En Wu, Hsin‐An Chen, Mao-Jhen Jhou, Yen-Ning Chen, Ting-Jen Chang, Chi-Jie Lu
Software Mentions: 8
Published: almost 4 years ago
10.3390/ani10112097
Supplementing Northern Australian Beef Cattle with Desmanthus Tropical Legume Reduces In-Vivo Methane EmissionsCited by: 16
Author(s): Bénédicte Suybeng, E. Charmley, Christopher Gardiner, Bunmi S. Malau‐Aduli, A.E.O. Malau‐Aduli
Software Mentions: 8
Published: about 4 years ago
10.1371/journal.pone.0232648
Climatic drivers of Verticillium dahliae occurrence in Mediterranean olive-growing areas of southern SpainCited by: 1
Author(s): Juan M. Requena‐Mullor, José Manuel Garcı́a-Garrido, Pilar Garcı́a Garcı́a, Estefanı́a Rodrı́guez
Software Mentions: 6
Published: almost 4 years ago
10.1111/febs.15292
Fibroblast‐specific genome‐scale modelling predicts an imbalance in amino acid metabolism in Refsum diseaseCited by: 4
Author(s): Agnieszka B. Wegrzyn, Katharina Herzog, Albert Gerding, Marcel Kwiatkowski, Justina C. Wolters, Amalia M. Dolga, A. E. M. van Lint, Ronald J. A. Wanders, Hans R. Waterham, Barbara M. Bakker
Software Mentions: 5
Published: over 4 years ago
10.7554/eLife.65948
Nutrient dominance governs the assembly of microbial communities in mixed nutrient environmentsCited by: 42
Author(s): Sylvie Estrela, Alicia Sánchez-Gorostiaga, Jean C. C. Vila, Álvaro Sánchez
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.ppat.1009022
Calcineurin phosphatase activity regulates Varicella-Zoster Virus induced cell-cell fusionCited by: 4
Author(s): Momei Zhou, Vivek Kamarshi, Ann M. Arvin, Stefan L. Oliver
Software Mentions: 3
Published: about 4 years ago
10.1371/journal.ppat.1008961
The N-terminus of varicella-zoster virus glycoprotein B has a functional role in fusionCited by: 8
Author(s): Stefan L. Oliver, Yi Xing, Dong-Hua Chen, Sook Young Roh, Grigore Pintilie, David Bushnell, Marvin Sommer, Edward Yang, Andrea Carfı́, Wah Chiu, Ann M. Arvin
Software Mentions: 3
Published: almost 4 years ago
10.1038/s41598-020-80062-1
Evaluation metrics and validation of presence-only species distribution models based on distributional maps with varying coverageCited by: 35
Author(s): Kamil Konowalik, Agata Nosol
Software Mentions: 3
Published: almost 4 years ago
10.1111/pbi.13097
Immunogenicity of plant‐produced porcine circovirus‐like particles in miceCited by: 11
Author(s): Cornelius J. Gunter, Guy L. Regnard, Edward P. Rybicki, Inga I. Hitzeroth
Software Mentions: 3
Published: almost 6 years ago
10.1002/ece3.2382
Models of Eucalypt phenology predict bat population fluxCited by: 29
Author(s): J. R. Giles, Raina K. Plowright, Peggy Eby, Alison J. Peel, Hamish McCallum
Software Mentions: 3
Published: over 8 years ago
10.1107/S2059798320010505
Crystal structures of human ENPP1 in apo and bound formsCited by: 18
Author(s): Matthew L. Dennis, Janet Newman, Olan Dolezal, Meghan Hattarki, Regina Surjadi, Stewart D. Nuttall, Tam Pham, Thomas Nebl, Michelle Camerino, Poh Sim Khoo, Brendon J. Monahan, T.S. Peat
Software Mentions: 2
Published: over 4 years ago
10.3762/bjoc.16.180
GlypNirO: An automated workflow for quantitative <i>N</i>- and <i>O</i>-linked glycoproteomic data analysisCited by: 5
Author(s): Toan K. Phung, Cassandra L. Pegg, Benjamin L. Schulz
Software Mentions: 2
Published: over 4 years ago
10.3389/fphar.2020.00067
Development of Prediction Models for Drug-Induced Cholestasis, Cirrhosis, Hepatitis, and Steatosis Based on Drug and Drug Metabolite StructuresCited by: 13
Author(s): Hyun Kil Shin, Myung-Gyun Kang, Daeui Park, Tamina Park, Soon-Seek Yoon
Software Mentions: 2
Published: almost 5 years ago
10.1016/j.rse.2020.112128
National-scale mapping of building height using Sentinel-1 and Sentinel-2 time seriesCited by: 77
Author(s): David Frantz, Franz Schug, Akpona Okujeni, Claudio Navacchi, Wolfgang Wagner, Sebastian van der Linden, Patrick Hostert
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-019-50529-x
Estimation of nephron number in living humans by combining unenhanced computed tomography with biopsy-based stereologyCited by: 20
Author(s): Takaya Sasaki, Nobuyuki Tsuboi, Yusuke Okabayashi, Kotaro Haruhara, Go Kanzaki, Kentaro Koike, Adam Kobayashi, Izumi Yamamoto, Sho Takahashi, Toshiharu Ninomiya, Akira Shimizu, Andrew D. Rule, John F. Bertram, Takashi Yokoo
Software Mentions: 2
Published: about 5 years ago
10.1074/mcp.RA120.002433
High-Throughput and Site-Specific N-Glycosylation Analysis of Human Alpha-1-Acid Glycoprotein Offers a Great Potential for New Biomarker DiscoveryCited by: 24
Author(s): Toma Keser, Marko Tijardović, Ivan Gornik, Edita Lukić, Gordan Lauc, Olga Gornik, Mislav Novokmet
Software Mentions: 2
Published: almost 4 years ago
10.1371/journal.pgen.1009071
The RSC (Remodels the Structure of Chromatin) complex of Candida albicans shows compositional divergence with distinct roles in regulating pathogenic traitsCited by: 6
Author(s): Vinutha K. Balachandra, Jiyoti Verma, Madhu Shankar, Timothy M. Tucey, Ana Traven, Ralf B. Schittenhelm, Santanu Ghosh
Software Mentions: 2
Published: about 4 years ago
10.2196/23938
Comparison of the Validity and Generalizability of Machine Learning Algorithms for the Prediction of Energy Expenditure: Validation StudyCited by: 9
Author(s): Ruairi O’Driscoll, Jake Turicchi, Mark Hopkins, Cristiana Duarte, Graham Horgan, Graham Finlayson, R. James Stubbs
Software Mentions: 2
Published: over 3 years ago
10.1074/jbc.RA120.015694
α2-Macroglobulin-like protein 1 can conjugate and inhibit proteases through their hydroxyl groups, because of an enhanced reactivity of its thiol esterCited by: 5
Author(s): Seandean L. Harwood, Nadia Sukusu Nielsen, Kathrine Tejlgård Jensen, Peter Kresten Nielsen, Ida B. Thøgersen, Jan J. Enghild
Software Mentions: 2
Published: about 4 years ago
10.1371/journal.pone.0204457
Expression of a recombinant, 4'-Phosphopantetheinylated, active M. tuberculosis fatty acid synthase I in E. coliCited by: 3
Author(s): Shoshana Baron, Yoav Peleg, Jacob Grunwald, David Morgenstern, Nadav Elad, Moshe Peretz, Shira Albeck, Yishai Levin, John T. Welch, Kim A. DeWeerd, Alon Schwarz, Yigal Burstein, Ron Diskin, Zippora Shakked, Oren Zimhony
Software Mentions: 2
Published: about 6 years ago
10.1002/prca.201600190
Complementary proteomic approaches reveal mitochondrial dysfunction, immune and inflammatory dysregulation in a mouse model of Gulf War IllnessCited by: 20
Author(s): Zuchra Zakirova, Jon Reed, Gogce Crynen, Lauren Horne, Samira Hassan, Venkatarajan S. Mathura, Michael Mullan, Fiona Crawford, Ghania Ait‐Ghezala
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-021-95188-z
Comparison of different approaches to estimate bark volume of industrial wood at disc and log scaleCited by: 8
Author(s): Ferréol Berendt, Felipe de Miguel-Díez, Evelyn Wallor, Ľubomír Blaško, Tobias Cremer
Software Mentions: 1
Published: over 3 years ago
10.1007/s40279-017-0813-0
Test-Retest Reliability and Interpretation of Common Concussion Assessment Tools: Findings from the NCAA-DoD CARE ConsortiumCited by: 129
Author(s): Steven P. Broglio, Barry P. Katz, Shi Zhao, Michael McCrea, Thomas W. McAllister
Software Mentions: 1
Published: about 7 years ago
10.1186/s40064-016-3774-0
An empirical research on evaluating banks’ credit assessment of corporate customersCited by: 18
Author(s): Sang-Bing Tsai, Guodong Li, Chia‐Huei Wu, Yu Zheng, Jiangtao Wang
Software Mentions: 1
Published: about 8 years ago
10.3390/ijerph17103566
Relationship between Fundamental Movement Skills and Physical Activity in Preschool-aged Children: A Systematic ReviewCited by: 35
Author(s): Fei Xin, Sitong Chen, Cain C. T. Clark, Jintao Hong, Yang Liu, Yong Cai
Software Mentions: 1
Published: over 4 years ago
10.7554/eLife.63452
RNF41 regulates the damage recognition receptor Clec9A and antigen cross-presentation in mouse dendritic cellsCited by: 12
Author(s): Kirsteen M. Tullett, Peter Tan, Hae Young Park, Ralf B. Schittenhelm, Nicole Michael, Rong Li, Antonia N. Policheni, Emily Gruber, Cheng Huang, Alex J. Fulcher, Jillian C Danne, P.E. Czabotar, Linda M. Wakim, Justine D. Mintern, Georg Ramm, Kristen J. Radford, Irina Caminschi, Meredith O’Keeffe, José A Villadangos, Mark D. Wright, Marnie E. Blewitt, William R. Heath, Ken Shortman, Anthony W. Purcell, Nicos A. Nicola, Jianguo Zhang, Mireille H. Lahoud
Software Mentions: 1
Published: about 4 years ago
10.3390/ijms20061302
Identification of Candidate Ergosterol-Responsive Proteins Associated with the Plasma Membrane of Arabidopsis thalianaCited by: 17
Author(s): Thembisile G Khoza, Ian A. Dubery, Lizelle A. Piater
Software Mentions: 1
Published: almost 6 years ago
10.1128/JVI.00677-17
Reducing V3 Antigenicity and Immunogenicity on Soluble, Native-Like HIV-1 Env SOSIP TrimersCited by: 41
Author(s): Rajesh P. Ringe, Gabriel Ozorowski, Kimmo Rantalainen, Weston B. Struwe, Katie Matthews, Jonathan L. Torres, Anila Yasmeen, Christopher A. Cottrell, Thomas J. Ketas, Celia C. LaBranche, David C. Montefiori, Albert Cupo, Max Crispin, Ian A. Wilson, Andrew B. Ward, Rogier W. Sanders, Per Johan Klasse, John P. Moore
Software Mentions: 1
Published: over 7 years ago
10.1186/1479-5876-6-5
Ex Vivo Metrics™, a preclinical tool in new drug developmentCited by: 9
Author(s): C. G. Curtis, Kevin Bilyard, Hugo Stephenson
Software Mentions: 1
Published: almost 17 years ago
10.1186/s12896-018-0489-z
Expression of Rift Valley fever virus N-protein in Nicotiana benthamiana for use as a diagnostic antigenCited by: 12
Author(s): Sandiswa Mbewana, Ann E. Meyers, Brandon Weber, Vuyokazi Epipodia Mareledwane, Maryke L. Ferreira, Phelix A.O. Majiwa, Edward P. Rybicki
Software Mentions: 1
Published: about 6 years ago
10.1186/1471-2156-6-5
Cited by: 162Author(s): Christopher J. Cronin, Jane Mendel, Saleem Mukhtar, Young-Mee Kim, Robert C. Stirbl, Jehoshua Bruck, Paul W. Sternberg
Software Mentions: 1
Published: almost 20 years ago
10.3762/bjoc.16.253
Semiautomated glycoproteomics data analysis workflow for maximized glycopeptide identification and reliable quantificationCited by: 7
Author(s): Steffen Lippold, Arnoud H. de Ru, Jan Nouta, Peter A. van Veelen, Magnus Palmblad, Manfred Wuhrer, Noortje de Haan
Software Mentions: 1
Published: about 4 years ago
10.1042/BCJ20190095
The ChlD subunit links the motor and porphyrin binding subunits of magnesium chelataseCited by: 20
Author(s): David A. Farmer, Amanda A. Brindley, Andrew Hitchcock, Philip J. Jackson, Bethany Johnson, Mark J. Dickman, C. Neil Hunter, J. David Reid, Nathan B. P. Adams
Software Mentions: 1
Published: over 5 years ago
10.1155/2019/5640173
The Neuroprotective Role of<i> Origanum syriacum</i> L. and<i> Lavandula dentata</i> L. Essential Oils through Their Effects on AMPA ReceptorsCited by: 27
Author(s): Mohammad Qneibi, Nidal Jaradat, Mohammed Hawash, Abdel Naser Zaid, Abdel–Razzak Natsheh, Remah Yousef, Qais AbuHasan
Software Mentions: 1
Published: almost 6 years ago
10.3390/pharmaceutics13060798
Identification and Relative Quantification of hFSH Glycoforms in Women’s Sera via MS–PRM-Based ApproachCited by: 1
Author(s): Chiara Melchiorre, Cérina Chhuon, Vincent Jung, Joanna Lipecka, Francesca Di Rella, Alessandro Conforti, Angela Amoresano, Andrea Carpentieri, Chiara Guerrera
Software Mentions: 1
Published: over 3 years ago
10.1098/rstb.2015.0265
A moving observer in a three-dimensional worldCited by: 12
Author(s): Andrew Glennerster
Software Mentions: 1
Published: over 8 years ago
10.1111/pbi.12783
Immunogenicity of plant‐produced African horse sickness virus‐like particles: implications for a novel vaccineCited by: 22
Author(s): Susan J. Dennis, Ann E. Meyers, Alan John Guthrie, Inga I. Hitzeroth, Edward P. Rybicki
Software Mentions: 1
Published: over 7 years ago
10.1186/s13007-017-0243-x
A novel 3D imaging system for strawberry phenotypingCited by: 51
Author(s): Joe Q. He, Richard J. Harrison, Bo Li
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pbio.3000827
Full-length three-dimensional structure of the influenza A virus M1 protein and its organization into a matrix layerCited by: 17
Author(s): Lisa Selzer, Zhaoming Su, Grigore Pintilie, Wah Chiu, Karla Kirkegaard
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pone.0113356
Is Your Ethics Committee Efficient? Using “IRB Metrics” as a Self-Assessment Tool for Continuous Improvement at the Faculty of Tropical Medicine, Mahidol University, ThailandCited by: 24
Author(s): Pornpimon Adams, Chanthima Limphattharacharoen, Sukanya Prakobtham, Krisana Pengsaa, Srisin Khusmith
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0018264
Phosphorylation of AMPA Receptors Is Required for Sensory Deprivation-Induced Homeostatic Synaptic PlasticityCited by: 83
Author(s): Anubhuti Goel, Linda Xu, Kevin M. Snyder, Song Lee, Yamila Goenaga-Vázquez, Andrea Megill, Kogo Takamiya, Richard L. Huganir, Hey Kyoung Lee
Software Mentions: 1
Published: over 13 years ago
10.3389/fphar.2018.00581
Identification of a Novel EF-Loop in the N-terminus of TRPM2 Channel Involved in Calcium SensitivityCited by: 10
Author(s): Yuhuan Luo, Xiafei Yu, Cheng Ma, Jianhong Luo, Wei Yang
Software Mentions: 1
Published: over 6 years ago
10.3205/zma001286
Assessment methods in medical specialist assessments in the DACH region - overview, critical examination and recommendations for further development.Cited by: 6
Author(s): Nils Thiessen, Martin R. Fischer, Sören Huwendiek
Software Mentions: 1
Published: almost 6 years ago
10.1200/CCI.19.00131
Open Health Imaging Foundation Viewer: An Extensible Open-Source Framework for Building Web-Based Imaging Applications to Support Cancer ResearchCited by: 28
Author(s): Erik Ziegler, Trinity Urban, Danny Brown, James Petts, Steve Pieper, Rob Lewis, Chris Hafey, Gordon J. Harris
Software Mentions: 1
Published: about 4 years ago
10.1074/jbc.M115.678292
Ca2+ Influx through Store-operated Calcium Channels Replenishes the Functional Phosphatidylinositol 4,5-Bisphosphate Pool Used by Cysteinyl Leukotriene Type I ReceptorsCited by: 12
Author(s): Abdullah M. Alswied, Anant B. Parekh
Software Mentions: 1
Published: about 9 years ago
10.1016/j.jbc.2021.100433
Glycosyltransferase POMGNT1 deficiency strengthens N-cadherin-mediated cell–cell adhesionCited by: 5
Author(s): Seema Noor, Marcus Hoffmann, Natalie Rinis, Markus F. Bartels, Patrick R. Winterhalter, Christina Hoelscher, René Hennig, Nastassja Himmelreich, Christian Thiel, Thomas Ruppert, Erdmann Rapp, Sabine Strahl
Software Mentions: 1
Published: almost 4 years ago
10.1016/j.jbc.2021.100809
Substrate specificities and reaction kinetics of the yeast oligosaccharyltransferase isoformsCited by: 5
Author(s): Jillianne Eyring, Chi Feng Lin, Elsy M. Ngwa, Jérémy Boilevin, Giorgio Pesciullesi, Kaspar P. Locher, Tamis Darbre, Jean‐Louis Reymond, Markus Aebi
Software Mentions: 1
Published: almost 4 years ago
10.1016/j.jbc.2021.101055
POGLUT2 and POGLUT3 O-glucosylate multiple EGF repeats in fibrillin-1, -2, and LTBP1 and promote secretion of fibrillin-1Cited by: 4
Author(s): Daniel Williamson, Camron J. Sohn, Atsuko Ito, Robert S. Haltiwanger
Software Mentions: 1
Published: over 3 years ago
10.1200/JCO.18.01511
TBCRC 022: A Phase II Trial of Neratinib and Capecitabine for Patients With Human Epidermal Growth Factor Receptor 2–Positive Breast Cancer and Brain MetastasesCited by: 235
Author(s): Rachel A. Freedman, Rebecca Gelman, Carey K. Anders, Michelle Melisko, Heather A. Parsons, Anne M. Cropp, Kelly M. Silvestri, Christine M Cotter, K. Componeschi, Juan M. Marte, Roisín M. Connolly, Beverly Moy, Catherine Van Poznak, Kimberly Blackwell, Shannon Puhalla, Rachel C. Jankowitz, Karen L. Smith, Nuhad K. Ibrahim, Timothy J. Moynihan, Ciara C. O’Sullivan, Julie R. Nangia, Polly Niravath, Nadine Tung, Paula Raffin Pohlmann, Robyn Burns, Mothaffar F. Rimawi, Ian E. Krop, Antonio C. Wolff, Eric P. Winer, Nancy U. Lin
Software Mentions: 1
Published: over 5 years ago
10.4274/jcrpe.galenos.2019.2019.0127
New Features for Child Metrics: Further Growth References and Blood Pressure CalculationsCited by: 52
Author(s): Kadir Demır, Ergun Konakçı, Güven Özkaya, Belde Kasap Demir, Samim Özen, Murat Aydın, Feyza Darendelıler
Software Mentions: 1
Published: over 4 years ago
10.1530/JOE-18-0479
Neutrophil elastase-cleaved corticosteroid-binding globulin is absent in human plasmaCited by: 3
Author(s): Lesley A. Hill, Dimitra Vassiliadi, Ioanna Dimopoulou, A. F. Anderson, Luke D Boyle, Alixe Kilgour, Roland H Stimson, Yoan Machado, Christopher M. Overall, Brian R. Walker, John G. Lewis, Geoffrey L. Hammond
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12963-020-0202-z
Population Health Metrics: the next phaseCited by: 0
Author(s): Jonathan M. Samet, Christopher J L Murray, Alan D. López
Software Mentions: 1
Published: almost 5 years ago