cran: ggfortify | Projects | Ecosyste.ms: Papers

10.1038/s41598-020-76683-1

Revisiting potential associations between brain morphology, fear acquisition and extinction through new data and a literature review
Cited by: 7
Author(s): Mana R. Ehlers, Janne Nold, Manuel Kuhn, Maren Klingelhöfer-Jens, Tina B. Lonsdorf
Software Mentions: 44
Published: about 4 years ago

10.3390/s20247188

Which Are the Central Aspects of Infant Sleep? The Dynamics of Sleep Composites across Infancy
Cited by: 17
Author(s): Sarah F. Schoch, Reto Huber, Malcolm Kohler, Salomé Kurth
Software Mentions: 26
Published: about 4 years ago

10.3390/cells8091045

Systematic Assessment of Blood-Borne MicroRNAs Highlights Molecular Profiles of Endurance Sport and Carbohydrate Uptake
Cited by: 12
Author(s): Fabian Kern, Nicole Ludwig, Christina Backes, Esther Maldener, Tobias Fehlmann, Artur Suleymanov, Eckart Meese, Anne Hecksteden, Andreas Keller, Tim Meyer
Software Mentions: 21
Published: over 5 years ago

10.3389/fgene.2021.667936

Bioinformatic Analysis of Temporal and Spatial Proteome Alternations During Infections
Cited by: 9
Author(s): Matineh Rahmatbakhsh, Alla Gagarinova, Mohan Babu
Software Mentions: 21
Published: over 3 years ago

10.3389/fimmu.2020.01691

Leveraging Public Single-Cell and Bulk Transcriptomic Datasets to Delineate MAIT Cell Roles and Phenotypic Characteristics in Human Malignancies
Cited by: 22
Author(s): Tony Yao, Parisa Shooshtari, S. M. Mansour Haeryfar
Software Mentions: 18
Published: over 4 years ago

10.3389/fimmu.2020.565730

Class I HLA Allele Predicted Restricted Antigenic Coverages for Spike and Nucleocapsid Proteins Are Associated With Deaths Related to COVID-19
Cited by: 22
Author(s): Marco Antônio M. Pretti, Rômulo Gonçalves Galvani, Gustavo Fioravanti Vieira, Adriana Bonomo, Martín Bonamino, Mariana Boroni
Software Mentions: 17
Published: about 4 years ago

10.3390/ijms22052244

The Distribution of Several Genomic Virulence Determinants Does Not Corroborate the Established Serotyping Classification of Bacillus thuringiensis
Cited by: 4
Author(s): Anton E. Shikov, Yury V. Malovichko, Arseniy Lobov, Maria Belousova, Anton A. Nizhnikov, Kirill S. Antonets
Software Mentions: 16
Published: almost 4 years ago

10.1128/MRA.00129-19

omu, a Metabolomics Count Data Analysis Tool for Intuitive Figures and Convenient Metadata Collection
Cited by: 12
Author(s): Connor R. Tiffany, Andreas J. Bäumler
Software Mentions: 16
Published: over 5 years ago

10.7717/peerj.5661

High-throughput metabarcoding reveals the effect of physicochemical soil properties on soil and litter biodiversity and community turnover across Amazonia
Cited by: 17
Author(s): Camila Duarte Ritter, Alexander Zizka, Fabian Roger, Hanna Tuomisto, Christopher J. Barnes, R. Henrik Nilsson, Alexandre Antonelli
Software Mentions: 12
Published: about 6 years ago

10.3390/insects11080535

Impacts of Dietary Nutritional Composition on Larval Development and Adult Body Composition in the Yellow Fever Mosquito (Aedes aegypti)
Cited by: 15
Author(s): Tess van Schoor, Erin Taylor Kelly, Nicole Tam, Geoffrey M. Attardo
Software Mentions: 12
Published: over 4 years ago

10.1038/s42003-020-01166-y

Spatial patterns of microbial communities across surface waters of the Great Barrier Reef
Cited by: 28
Author(s): Pedro R. Frade, Bettina Glasl, Samuel A. Matthews, Camille Mellin, Ester Á. Serrão, Kennedy Wolfe, Peter J. Mumby, Nicole S. Webster, David G. Bourne
Software Mentions: 11
Published: over 4 years ago

10.3389/fpsyg.2021.638659

Syllable Complexity and Morphological Synthesis: A Well-Motivated Positive Complexity Correlation Across Subdomains
Cited by: 2
Author(s): Shelece Easterday, Matthew Stave, Marc Allassonnière-Tang, Frank Seifart
Software Mentions: 11
Published: almost 4 years ago

10.3389/fonc.2021.672928

Glioma-Associated Stromal Cells Stimulate Glioma Malignancy by Regulating the Tumor Immune Microenvironment
Cited by: 13
Author(s): Xiangming Cai, Feng Yuan, Junhao Zhu, Jin Yang, Chao Tang, Zixiang Cong, Chiyuan Ma
Software Mentions: 11
Published: over 3 years ago

10.3389/fimmu.2018.03017

A Computational Approach Identifies Immunogenic Features of Prognosis in Human Cancers
Cited by: 8
Author(s): Malini Manoharan, Nitin Mandloi, Sushri Priyadarshini, Ashwini Patil, Rohit Gupta, Laxman Iyer, Ravi Gupta, Amitabha Chaudhuri
Software Mentions: 11
Published: about 6 years ago

10.1186/s42523-020-00066-0

Functional plasticity in oyster gut microbiomes along a eutrophication gradient in an urbanized estuary
Cited by: 16
Author(s): Rebecca J. Stevick, Anton F. Post, Marta Gómez-Chiarri
Software Mentions: 11
Published: almost 4 years ago

10.1093/aje/kwaa127

Conditional Cash Transfer Program and Leprosy Incidence: Analysis of 12.9 Million Families From the 100 Million Brazilian Cohort
Cited by: 15
Author(s): Júlia Moreira Pescarini, Elizabeth Williamson, Maria Yury Ichihara, Rosemeire Leovigildo Fiaccone, Laura Forastiere, Anna Ramond, Joilda Silva Nery, Maria Lúcia Fernandes Penna, Agostino Strina, Sandra Reis, Liam Smeeth, Laura C. Rodrigues, Elizabeth B Brickley, Gerson Oliveira Penna, Marcos Barreto
Software Mentions: 10
Published: over 4 years ago

10.1186/s13059-019-1647-x

Dynamic inosinome profiles reveal novel patient stratification and gender-specific differences in glioblastoma
Cited by: 48
Author(s): Domenico Alessandro Silvestris, Ernesto Picardi, Valeriana Cesarini, Bruno Fosso, Nicolò Mangraviti, Luca Massimi, Maurizio Martini, Graziano Pesole, Franco Locatelli, Angela Gallo
Software Mentions: 10
Published: almost 6 years ago

10.7554/eLife.62210

Proteomic analysis of young and old mouse hematopoietic stem cells and their progenitors reveals post-transcriptional regulation in stem cells
Cited by: 18
Author(s): Balyn W. Zaro, Joseph J. Noh, Victoria L. Mascetti, János Demeter, Benson M. George, Monika Żukowska, Gunsagar S. Gulati, Rahul Sinha, Ryan A. Flynn, Allison Banuelos, Allison Zhang, Adam C. Wilkinson, Peter K. Jackson, Irving L. Weissman
Software Mentions: 10
Published: about 4 years ago

10.1093/femsec/fiab127

Microbial characterisation and Cold-Adapted Predicted Protein (CAPP) database construction from the active layer of Greenland's permafrost
Cited by: 1
Author(s): Gilda Varliero, Muhammad Rafiq, Swati Singh, Annabel Summerfield, Fotis Sgouridis, Donald A. Cowan, Gary Barker
Software Mentions: 10
Published: over 3 years ago

10.1038/s41598-020-74909-w

Multi-strain volatile profiling of pathogenic and commensal cutaneous bacteria
Cited by: 19
Author(s): Shane Fitzgerald, Emer Duffy, Linda Holland, Aoife Morrin
Software Mentions: 10
Published: about 4 years ago

10.1530/EC-21-0027

Tumor growth rate in pancreatic neuroendocrine tumor patients undergoing PRRT with 177Lu-DOTATATE
Cited by: 4
Author(s): Olof Pettersson, Katarzyna Fröss-Baron, Joakim Crona, Anders Sundín
Software Mentions: 9
Published: over 3 years ago

10.3390/ijms22136855

Concentrated Raw Fibers Enhance the Fiber-Degrading Capacity of a Synthetic Human Gut Microbiome
Cited by: 3
Author(s): Alex Steimle, Mareike Neumann, Erica T. Grant, Jonathan D. Turner, Mahesh S. Desai
Software Mentions: 9
Published: over 3 years ago

10.1038/s41598-020-69772-8

SomaticCombiner: improving the performance of somatic variant calling based on evaluation tests and a consensus approach
Cited by: 15
Author(s): Mingyi Wang, Wen Luo, Kristine Jones, Xiaopeng Bian, Russell D. Williams, Herbert Higson, Dongjing Wu, Belynda Hicks, Meredith Yeager, Bin Zhu
Software Mentions: 9
Published: over 4 years ago

10.1098/rsos.180892

The recovery of North Atlantic right whales,<i>Eubalaena glacialis</i>, has been constrained by human-caused mortality
Cited by: 41
Author(s): Peter J. Corkeron, Philip K. Hamilton, John Bannister, Peter B. Best, Claire Charlton, Karina R. Groch, Ken P. Findlay, Victoria J. Rowntree, Els Vermeulen, Richard M. Pace
Software Mentions: 9
Published: about 6 years ago

10.1186/s12935-020-1113-6

Construction of a novel gene-based model for prognosis prediction of clear cell renal cell carcinoma
Cited by: 81
Author(s): Zedan Zhang, Enyu Lin, Hongkai Zhuang, Lu Xie, Xiaoqiang Feng, Jiumin Liu, Yuming Yu
Software Mentions: 9
Published: almost 5 years ago

10.1186/s12936-020-3133-z

Influence of house characteristics on mosquito distribution and malaria transmission in the city of Yaoundé, Cameroon
Cited by: 10
Author(s): Carmène Sandra Ngadjeu, Patricia Doumbe-Belisse, Abdou Talipouo, Landre Djamouko-Djonkam, Parfait Awono-Ambene, Sévilor Kekeunou, Wilson Toussile, Charles S. Wondji, Christophe Antonio-Nkondjio
Software Mentions: 9
Published: almost 5 years ago

10.3390/medicina57010025

No Association between 25-Hydroxyvitamin D and Insulin Resistance or Thyroid Hormone Concentrations in a Romanian Observational Study
Cited by: 2
Author(s): Roxana Adriana Stoica, Cristian Guja, Anca Pantea Stoian, Raluca Ioana Ștefan-van Staden, Ioana Popa-Tudor, Simona Ştefan, Robert Ancuceanu, Cristian Serafinceanu, Constantin Ionescu Tîrgoviște
Software Mentions: 9
Published: almost 4 years ago

10.3390/insects12070577

Transcriptome Analyses Provide Insights into the Aggressive Behavior toward Conspecific and Heterospecific in Thitarodes xiaojinensis (Lepidoptera: Hepialidae)
Cited by: 1
Author(s): Zhongchen Rao, Li Cao, Hua Wu, Richou Han
Software Mentions: 9
Published: over 3 years ago

10.3389/fmolb.2021.683671

Dissecting Metabolism of Leaf Nodules in Ardisia crenata and Psychotria punctata
Cited by: 7
Author(s): Florian Schindler, Lena Fragner, Johannes B Herpell, Andreas Berger, Martin Brenner, Sonja Tischler, Anke Bellaire, Jürg Schönenberger, Weimin Liu, Xiaoliang Sun, Johann Schinnerl, Lothar Brecker, Wolfram Weckwerth
Software Mentions: 9
Published: over 3 years ago

10.3389/fgene.2020.00817

Changes in H3K27ac at Gene Regulatory Regions in Porcine Alveolar Macrophages Following LPS or PolyIC Exposure
Cited by: 17
Author(s): Júber Herrera-Uribe, Haibo Li, Kristen A Byrne, Zahra F Bond, Crystal L. Loving, Christopher K. Tuggle
Software Mentions: 9
Published: over 4 years ago

10.1038/s41598-019-55325-1

Development of an in silico prediction system of human renal excretion and clearance from chemical structure information incorporating fraction unbound in plasma as a descriptor
Cited by: 25
Author(s): Reiko Watanabe, Rikiya Ohashi, Tsuyoshi Esaki, Hitoshi Kawashima, Yayoi Natsume-Kitatani, Chioko Nagao, Kenji Mizuguchi
Software Mentions: 8
Published: about 5 years ago

10.1038/s41598-021-93570-5

Three dimensional modeling of biologically relevant fluid shear stress in human renal tubule cells mimics in vivo transcriptional profiles
Cited by: 18
Author(s): Emily J. Ross, Emily R. Gordon, Hanna Sothers, Roshan Darji, Oakley Baron, Dustin W. Haithcock, Balabhaskar Prabhakarpandian, Kapil Pant, R Myers, Sara J. Cooper, Nancy J. Cox
Software Mentions: 8
Published: over 3 years ago

10.1128/mSphere.00176-18

High Rate of Infection by Only Oncogenic Human Papillomavirus in Amerindians
Cited by: 10
Author(s): Daniela Vargas-Robles, Magda Magris, Natalia Morales, Maurits N.C. de Koning, Iveth Rodríguez, Tahidid Nieves, Filipa Godoy-Vitorino, Gloria Inés Sánchez, Luis David Alcaraz, Larry J. Forney, María-Eglée Pérez, Luis García-Briceño, Leen–Jan van Doorn, Maria Gloria Domínguez-Bello
Software Mentions: 8
Published: over 6 years ago

10.1128/mSystems.00122-17

Market Integration Predicts Human Gut Microbiome Attributes across a Gradient of Economic Development
Cited by: 27
Author(s): Keaton Stagaman, Tara J Cepon-Robins, Melissa A. Liebert, Theresa E. Gildner, Samuel S. Urlacher, Felicia C. Madimenos, Karen Guillemin, J. Josh Snodgrass, Lawrence S. Sugiyama, Brendan J. M. Bohannan
Software Mentions: 8
Published: almost 7 years ago

10.1038/s42003-020-01156-0

Artificial eyespots on cattle reduce predation by large carnivores
Cited by: 12
Author(s): Cameron Radford, J. Weldon McNutt, Tracey L. Rogers, Ben Maslen, Neil R. Jordan
Software Mentions: 8
Published: over 4 years ago

10.1186/s12967-021-02744-2

Combined lymphocyte/monocyte count, D-dimer and iron status predict COVID-19 course and outcome in a long-term care facility
Cited by: 20
Author(s): Flavia Biamonte, Cirino Botta, Maria Mazzitelli, Salvatore Rotundo, Enrico Maria Trecarichi, Daniela Foti, Carlo Torti, Giuseppe Viglietto, Daniele Torella, Francesco Costanzo
Software Mentions: 8
Published: almost 4 years ago

10.1007/s12031-020-01787-2

Studying Autism Using Untargeted Metabolomics in Newborn Screening Samples
Cited by: 13
Author(s): Julie Courraud, Madeleine Ernst, Susan Svane Laursen, David M. Hougaard, Arieh Cohen
Software Mentions: 8
Published: almost 4 years ago

10.1371/journal.pone.0253847

TeamTree analysis: A new approach to evaluate scientific production
Cited by: 2
Author(s): Frank W. Pfrieger
Software Mentions: 8
Published: over 3 years ago

10.3390/plants10081536

Variation in Gene Expression between Two Sorghum bicolor Lines Differing in Innate Immunity Response
Cited by: 2
Author(s): Yaya Cui, Dongqin Chen, Yuyong Jiang, Dong Xu, Peter Balint‐Kurti, Gary Stacey
Software Mentions: 8
Published: over 3 years ago

10.18632/oncotarget.26668

mTOR inhibition affects Yap1-β-catenin-induced hepatoblastoma growth and development
Cited by: 11
Author(s): Laura Molina, Hong Yang, Adeola O. Adebayo Michael, Michael Oertel, Aaron Bell, Sucha Singh, Xin Chen, Junyan Tao, Satdarshan P. Monga
Software Mentions: 8
Published: almost 6 years ago

10.3389/fmicb.2021.601901

The Genomic Capabilities of Microbial Communities Track Seasonal Variation in Environmental Conditions of Arctic Lagoons
Cited by: 0
Author(s): Kristina Baker, Colleen T. E. Kellogg, J. W. McClelland, Kenneth H. Dunton, Byron C. Crump
Software Mentions: 7
Published: almost 4 years ago

10.1371/journal.pone.0209589

A metatranscriptomic analysis of diseased social wasps (Vespula vulgaris) for pathogens, with an experimental infection of larvae and nests
Cited by: 12
Author(s): Oliver Quinn, Monica A. M. Gruber, Robert L. Brown, James W. Baty, Mariana Bulgarella, Philip J. Lester
Software Mentions: 7
Published: almost 6 years ago

10.1371/journal.pone.0241691

Succinivibrionaceae is dominant family in fecal microbiota of Behçet’s Syndrome patients with uveitis
Cited by: 12
Author(s): Duygu Tecer, Feride Göğüş, Ayşe Kalkancı, Merve Erdoğan, Murat Hasanreisoğlu, Çağrı Ergin, Tarkan Karakan, Ramazan Kozan, Serhat Emre Coban, Kadir Serdar Diker
Software Mentions: 7
Published: about 4 years ago

10.3389/fgene.2020.577585

Development of an miRNA-Array-Based Diagnostic Signature for Periodontitis
Cited by: 11
Author(s): Sanli Jin, Jianguo Zhou, Xiaoyan Guan, Guohui Bai, Jianguo Liu, Liangwen Chen
Software Mentions: 7
Published: about 4 years ago

10.3389/fimmu.2020.609891

Targeted De-Methylation of the FOXP3-TSDR Is Sufficient to Induce Physiological FOXP3 Expression but Not a Functional Treg Phenotype
Cited by: 26
Author(s): Christopher Kressler, Gilles Gasparoni, Karl Nordström, Dania Hamo, Abdulrahman Salhab, Christoforos Dimitropoulos, Sascha Tierling, Petra Reinke, Hans‐Dieter Volk, Jörn Walter, Alf Hamann, Julia K. Polansky
Software Mentions: 7
Published: almost 4 years ago

10.1172/jci.insight.138066

Effector Vγ9Vδ2 T cell response to congenital Toxoplasma gondii infection
Cited by: 3
Author(s): Lifang Ma, Maria V. Papadopoulou, Martin Taton, Francesca Genco, Arnaud Marchant, Valeria Meroni, David Vermijlen
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.ppat.1009537

A plasmid locus associated with Klebsiella clinical infections encodes a microbiome-dependent gut fitness factor
Cited by: 17
Author(s): Jay Vornhagen, Christine M. Bassis, S. Ramakrishnan, Robert Hein, Sophia Mason, Yehudit Bergman, Nicole Sunshine, Yunfan Fan, Caitlyn L. Holmes, Winston Timp, Michael C. Schatz, Vincent B. Young, Patricia J. Simner, Michael A. Bachman
Software Mentions: 7
Published: over 3 years ago

10.3389/fimmu.2021.640190

Pre-existing Immunity to Japanese Encephalitis Virus Alters CD4 T Cell Responses to Zika Virus Inactivated Vaccine
Cited by: 7
Author(s): Noemia S. Lima, Damee Moon, Samuel Darko, Rafael A. De La Barrera, Leyi Lin, Michael Koren, Richard G. Jarman, Kenneth H. Eckels, Stephen J. Thomas, Nelson L. Michael, Kayvon Modjarrad, Daniel C. Douek, Lydie Trautmann
Software Mentions: 6
Published: almost 4 years ago

10.3389/fnmol.2020.563091

Isolation and Characterization of Multi-Protein Complexes Enriched in the K-Cl Co-transporter 2 From Brain Plasma Membranes
Cited by: 14
Author(s): Joshua L. Smalley, Georgina Kontou, Catherine Choi, Qiang Ren, David Albrecht, Krithika Abiraman, M. Santos, Christopher E. Bope, Tarek Z. Deeb, Paul Davies, Nicholas J. Brandon, Stephen J. Moss
Software Mentions: 6
Published: about 4 years ago

10.3390/cancers13092248

Claudin-Low Breast Cancer Inflammatory Signatures Support Polarization of M1-Like Macrophages with Protumoral Activity
Cited by: 7
Author(s): Mayra C. Suárez-Arriaga, Alfonso Méndez‐Tenorio, Vadim Pérez‐Koldenkova, Ezequiel M. Fuentes‐Pananá
Software Mentions: 6
Published: over 3 years ago

10.1038/s41396-020-00829-2

Niche-adaptation in plant-associated Bacteroidetes favours specialisation in organic phosphorus mineralisation
Cited by: 53
Author(s): Ian Lidbury, Chiara Borsetto, Andrew Murphy, Andrew R. Bottrill, Alexandra M. E. Jones, Gary D. Bending, John P. Hammond, Yin Chen, Elizabeth M. H. Wellington, David J. Scanlan
Software Mentions: 6
Published: about 4 years ago

10.1038/s41598-021-82666-7

Identification of sources resistant to a virulent Fusarium wilt strain (VCG 0124) infecting Cavendish bananas
Cited by: 14
Author(s): R Thangavelu, M. Saraswathi, S. Uma, M. Loganathan, S. Backiyarani, P. Durai, Esack Edwin Raj, Narayanan Marimuthu, G. Kannan, Rony Swennen
Software Mentions: 6
Published: almost 4 years ago

10.1371/journal.pmed.1002730

Predicting survival from colorectal cancer histology slides using deep learning: A retrospective multicenter study
Cited by: 505
Author(s): Jakob Nikolas Kather, Johannes Krisam, Pornpimol Charoentong, Tom Luedde, Esther Herpel, Cleo Aron Weis, Timo Gaiser, Alexander Marx, Nektarios A. Valous, Dyke Ferber, Lina Jansen, Constantino Carlos Reyes-Aldasoro, Inka Zörnig, Dirk Jäger, Hermann Brenner, Jenny Chang‐Claude, Michael Hoffmeister, Niels Halama
Software Mentions: 6
Published: almost 6 years ago

10.3390/metabo11040194

Plasma Metabolomic Profiling in 1391 Subjects with Overweight and Obesity from the SPHERE Study
Cited by: 12
Author(s): G. Frigerio, Chiara Favero, Diego Savino, Rosa Mercadante, Benedetta Albetti, Laura Dioni, Luisella Vigna, Valentina Bollati, Angela Cecilia Pesatori, Silvia Fustinoni
Software Mentions: 6
Published: over 3 years ago

10.18632/oncotarget.11772

Hypoxia-responsive miR-210 promotes self-renewal capacity of colon tumor-initiating cells by repressing ISCU and by inducing lactate production
Cited by: 47
Author(s): Pit Ullmann, Komal Qureshi-Baig, Fabien Rodriguez, Aurélien Ginolhac, Yannic Nonnenmacher, Dominik Ternes, Jil Weiler, Karoline Gäbler, Christelle Bahlawane, Karsten Hiller, Serge Haan, Elisabeth Letellier
Software Mentions: 5
Published: over 8 years ago

10.3390/insects11090578

The Microbiome of Neotropical Water Striders and Its Potential Role in Codiversification
Cited by: 12
Author(s): Anakena M. Castillo, Kristin Saltonstall, Carlos F. Arias, Karina Chavarria, Luis A. Ramírez‐Camejo, Luis C. Mejía, Luis F. De León
Software Mentions: 5
Published: over 4 years ago

10.7554/eLife.36967

Topography of cancer-associated immune cells in human solid tumors
Cited by: 187
Author(s): Jakob Nikolas Kather, Meggy Suarez-Carmona, Pornpimol Charoentong, Cleo–Aron Weis, Daniela Hirsch, Peter Bankhead, Marcel Horning, Dyke Ferber, Ivan Kel, Esther Herpel, Sarah Schott, Inka Zörnig, Jochen Utikal, Alexander Marx, Timo Gaiser, Hermann Brenner, Jenny Chang‐Claude, Michael Hoffmeister, Dirk Jäger, Niels Halama
Software Mentions: 5
Published: over 6 years ago

10.1186/s12864-019-6314-9

Mating precedes selective immune priming which is maintained throughout bumblebee queen diapause
Cited by: 32
Author(s): Thomas J. Colgan, Sive Finlay, Mark J. F. Brown, James C. Carolan
Software Mentions: 5
Published: about 5 years ago

10.3390/genes11121512

You Had Me at “MAGIC”!: Four Barley MAGIC Populations Reveal Novel Resistance QTL for Powdery Mildew
Cited by: 13
Author(s): Fluturë Novakazi, Lene Krusell, J. Jensen, Jihad Orabi, A. Jahoor, Tommy Bengtsson
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.ppat.1009441

Viral infection of human neurons triggers strain-specific differences in host neuronal and viral transcriptomes
Cited by: 8
Author(s): Colleen A. Mangold, Molly M. Rathbun, Daniel W. Renner, Chad V. Kuny, Moriah L. Szpara
Software Mentions: 5
Published: almost 4 years ago

10.3389/fmicb.2018.02077

Revisiting the Taxonomy of the Genus Arcobacter: Getting Order From the Chaos
Cited by: 237
Author(s): Alba Pérez-Cataluña, Nuria Salas-Massó, Ana L. Diéguez, Sabela Balboa, Alberto Lema, Jesús L. Romalde, María José Figueras
Software Mentions: 5
Published: over 6 years ago

10.3390/ijms20020296

High-Throughput Omics and Statistical Learning Integration for the Discovery and Validation of Novel Diagnostic Signatures in Colorectal Cancer
Cited by: 30
Author(s): Nguyen Phuoc Long, Seongoh Park, Nguyễn Hoàng Anh, Tran Diem Nghi, Sang Jun Yoon, Jeong Hill Park, Jong-Tae Lim, Sung Won Kwon
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-020-71864-4

Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing
Cited by: 25
Author(s): Katherine Chacón-Vargas, Julian Torres, Martha Gilés-Gómez, Adelfo Escalante, John G. Gibbons
Software Mentions: 5
Published: over 4 years ago

10.3389/fpls.2020.574982

Metabolic, Enzymatic Activity, and Transcriptomic Analysis Reveals the Mechanism Underlying the Lack of Characteristic Floral Scent in Apricot Mei Varieties
Cited by: 6
Author(s): Fei Bao, Tengxun Zhang, Anqi Ding, Aiqin Ding, Weiru Yang, Jia Wang, Tangren Cheng, Qixiang Zhang
Software Mentions: 4
Published: about 4 years ago

10.1155/2018/2906292

A Simple Guideline to Assess the Characteristics of RNA-Seq Data
Cited by: 21
Author(s): Keun Hong Son, Sungryul Yu, Wonseok Shin, Kyudong Han, Keunsoo Kang
Software Mentions: 4
Published: about 6 years ago

10.1097/j.pain.0000000000001880

The impact of bone cancer on the peripheral encoding of mechanical pressure stimuli
Cited by: 12
Author(s): M. Kucharczyk, Kim I. Chisholm, Franziska Denk, Anthony H. Dickenson, Kirsty Bannister, Stephen B. McMahon
Software Mentions: 4
Published: over 4 years ago

10.1155/2020/8970340

Identification of Long Noncoding RNAs as Predictors of Survival in Triple-Negative Breast Cancer Based on Network Analysis
Cited by: 26
Author(s): Xiaoxiao Li, Limin Wang, Jie Hou, Hongyang Li, Rui Wang, Chao Wang, Wenhai Xie
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-019-48296-w

Carbon assimilation profiles of mucoralean fungi show their metabolic versatility
Cited by: 17
Author(s): Julia Pawłowska, Alicja Okrasińska, Kamil Kisło, Tamara Aleksandrzak‐Piekarczyk, Katarzyna Szatraj, Somayeh Dolatabadi, Anna Muszewska
Software Mentions: 4
Published: over 5 years ago

10.1007/s00432-019-03078-9

Transcriptome analysis reveals overlap in fusion genes in a phase I clinical cohort of TNBC and HGSOC patients treated with buparlisib and olaparib
Cited by: 4
Author(s): Julia Eismann, Yujing J. Heng, Johannes M. Waldschmidt, Ioannis S. Vlachos, Kathryn P. Gray, Ursula A. Matulonis, Panagiotis A. Konstantinopoulos, Charles J. Murphy, Sheida Nabavi, Gerburg M. Wulf
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-018-20856-6

A cleavage product of Polycystin-1 is a mitochondrial matrix protein that affects mitochondria morphology and function when heterologously expressed
Cited by: 68
Author(s): Cheng-Chao Lin, Mahiro Kurashige, Yi Liu, Takeshi Terabayashi, Yu Ishimoto, Tanchun Wang, Vineet Choudhary, Ryan P. Hobbs, Li-Ka Liu, Ping-Hsien Lee, Patricia Outeda, Fang Zhou, Nicholas P. Restifo, Terry Watnick, Haruna Kawano, Shigeo Horie, William A. Prinz, Hong Xu, Luís F. Menezes, Gregory G. Germino
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12935-019-0953-4

Effect of hyperoside on cervical cancer cells and transcriptome analysis of differentially expressed genes
Cited by: 22
Author(s): Guo Wei, Hui Yu, Lu Zhang, Xiuwei Chen, Yunduo Liu, Yaoxian Wang, Yunyan Zhang
Software Mentions: 4
Published: over 5 years ago

10.3390/plants10071466

Isolation and Characterization of Pseudomonas chlororaphis Strain ST9; Rhizomicrobiota and in Planta Studies
Cited by: 4
Author(s): Iris Bertani, Elisa Zampieri, Cristina Bez, Andrea Volante, Vittorio Venturi, Stefano Monaco
Software Mentions: 4
Published: over 3 years ago

10.7554/eLife.34613

Transcriptional profiling reveals extraordinary diversity among skeletal muscle tissues
Cited by: 93
Author(s): Erin E. Terry, Xiping Zhang, Christy Hoffmann, Laura D. Hughes, Scott A. Lewis, Jiajia Li, Marianne Wallace, Lance A. Riley, Collin M Douglas, Miguel A. Gutiérrez-Monreal, Nicholas F. Lahens, Ming Gong, Francisco H. Andrade, Karyn A. Esser, Michael Hughes
Software Mentions: 4
Published: over 6 years ago

10.1186/s41182-019-0166-5

Surveillance of Wuchereria bancrofti infection by anti-filarial IgG4 in urine among schoolchildren and molecular xenomonitoring in Sri Lanka: a post mass drug administration study
Cited by: 3
Author(s): Hidekazu Takagi, Thishan C. Yahathugoda, Bumpei Tojo, Upeksha L. Rathnapala, Fumiaki Nagaoka, Mirani V. Weerasooriya, Makoto Itoh
Software Mentions: 4
Published: over 5 years ago

10.3390/ani11082241

Transcriptomic Response under Heat Stress in Chickens Revealed the Regulation of Genes and Alteration of Metabolism to Maintain Homeostasis
Cited by: 8
Author(s): Hana Kim, Hye‐Ran Kim, Pil‐Nam Seong, D. K. Arora, Donghyun Shin, Woncheoul Park, Jong-Eun Park
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2019.00006

Fungal Biodiversity of the Most Common Types of Polish Soil in a Long-Term Microplot Experiment
Cited by: 38
Author(s): Jarosław Grządziel, Anna Gałązka
Software Mentions: 4
Published: almost 6 years ago

10.1007/s11104-019-04012-1

Regulation of nitrogen fixation from free-living organisms in soil and leaf litter of two tropical forests of the Guiana shield
Cited by: 19
Author(s): Leandro Van Langenhove, Thomas Depaepe, Sara Vicca, Joke Van den Berge, Clément Stahl, Elodie A. Courtois, James T. Weedon, Ifigenia Urbina, Oriol Grau, Dolores Asensio, Josep Peñuelas, Pascal Boeckx, Andreas Richter, Dominique Van Der Straeten, Ivan A. Janssens
Software Mentions: 4
Published: over 5 years ago

10.1016/j.stemcr.2020.06.003

Naive Human Embryonic Stem Cells Can Give Rise to Cells with a Trophoblast-like Transcriptome and Methylome
Cited by: 118
Author(s): Jessica Cinkornpumin, Sin Young Kwon, Yixin Guo, Ishtiaque Hossain, Jacinthe Sirois, Colleen S. Russett, Hsin Wei Tseng, Hiroaki Okae, Takahiro Arima, Thomas F. Duchaîne, Wanlu Liu, William A. Pastor
Software Mentions: 4
Published: over 4 years ago

10.1186/s12917-018-1406-3

Dynamic network measures reveal the impact of cattle markets and alpine summering on the risk of epidemic outbreaks in the Swiss cattle population
Cited by: 21
Author(s): Beatriz Vidondo, Bernhard Voelkl
Software Mentions: 4
Published: almost 7 years ago

10.3390/plants9111492

Anachronic Fruit Traits and Natural History Suggest Extinct Megafauna Herbivores as the Dispersers of an Endangered Tree
Cited by: 0
Author(s): Diego Muñoz‐Concha, Karla Muñoz, Andrea P. Loayza
Software Mentions: 4
Published: about 4 years ago

10.3389/fmicb.2017.02306

Antibiotic-Induced Alterations in Gut Microbiota Are Associated with Changes in Glucose Metabolism in Healthy Mice
Cited by: 89
Author(s): Richard R. Rodrigues, Renee Greer, Xiaoxi Dong, Karen D’Souza, Manoj Gurung, Jia Wu, Andrey Morgun, Natalia Shulzhenko
Software Mentions: 3
Published: about 7 years ago

10.1002/ece3.5759

Resilience to changes in lake trophic state: Nutrient allocation into <i>Daphnia</i> resting eggs
Cited by: 6
Author(s): Jana Isanta Navarro, Carmen Kowarik, M. Wessels, Dietmar Straile, Dominik Martin‐Creuzburg
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0197766

Analyses of phenotypic differentiations among South Georgian Diving Petrel (Pelecanoides georgicus) populations reveal an undescribed and highly endangered species from New Zealand
Cited by: 22
Author(s): Johannes H. Fischer, Igor Debski, Colin M. Miskelly, Charles A. Bost, Aymeric Fromant, Alan J. D. Tennyson, Jake Tessler, R Cole, Johanna H. Hiscock, Graeme A. Taylor, Heiko Wittmer
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2021.638555

Univariate and Multivariate QTL Analyses Reveal Covariance Among Mineral Elements in the Rice Ionome
Cited by: 9
Author(s): Huan Liu, Su-Xian Long, Shannon R. M. Pinson, Zhong Tang, Mary Lou Guerinot, David E. Salt, Fang‐Jie Zhao, Xin‐Yuan Huang
Software Mentions: 3
Published: almost 4 years ago

10.1186/s12974-020-01953-8

Coding transcriptome analyses reveal altered functions underlying immunotolerance of PEG-fused rat sciatic nerve allografts
Cited by: 2
Author(s): Tyler A. Smith, Cameron L. Ghergherehchi, Haley O. Tucker, George D. Bittner
Software Mentions: 3
Published: about 4 years ago

10.3390/plants8100424

Climatic Niche Shift during Azolla filiculoides Invasion and Its Potential Distribution under Future Scenarios
Cited by: 9
Author(s): Argantonio Rodríguez‐Merino, Rocío Fernández‐Zamudio, Pablo García‐Murillo, Jesús Muñoz
Software Mentions: 3
Published: about 5 years ago

10.3389/fimmu.2021.707355

Dysregulation of the Immune Environment in the Airways During HIV Infection
Cited by: 6
Author(s): Rubina Bunjun, Andreia Soares, Narjis Thawer, Tracey L. Müller, Agano Kiravu, Zekarias Ginbot, Björn Corleis, Brandon D. Murugan, Douglas S. Kwon, Florian von Groote-Bidlingmaier, Catherine Riou, Robert J. Wilkinson, Gerhard Walzl, Wendy A. Burgers
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2020.619968

Evidence for Proline Utilization by Oral Bacterial Biofilms Grown in Saliva
Cited by: 7
Author(s): Leanne Cleaver, Rebecca Moazzez, Guy Carpenter
Software Mentions: 3
Published: almost 4 years ago

10.3389/fmicb.2018.01622

Low-Temperature Sulfidic-Ice Microbial Communities, Borup Fiord Pass, Canadian High Arctic
Cited by: 11
Author(s): Christopher B. Trivedi, Graham E. Lau, Stephen E. Grasby, Alexis S. Templeton, John R. Spear
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2018.00445

Comparative mRNA-Seq Analysis Reveals the Improved EPS Production Machinery in Streptococcus thermophilus ASCC 1275 During Optimized Milk Fermentation
Cited by: 25
Author(s): Qinglong Wu, Nagendra P. Shah
Software Mentions: 3
Published: almost 7 years ago

10.3389/fnut.2021.715287

Omega-3 Fatty Acid Fortification of Flax Through Nutri-Priming
Cited by: 3
Author(s): Edward Marques, Heather Darby, Jana Kraft
Software Mentions: 3
Published: over 3 years ago

10.3389/fpls.2018.01603

The Beneficial Endophytic Fungus Fusariumsolani Strain K Alters Tomato Responses Against Spider Mites to the Benefit of the Plant
Cited by: 46
Author(s): Maria L. Pappas, Maria Liapoura, Dimitra Papantoniou, Marianna Avramidou, Nektarios Kavroulakis, Alexander Weinhold, George D. Broufas, Kalliope Κ. Papadopoulou
Software Mentions: 3
Published: about 6 years ago

10.3390/genes9060294

Tissue Specificity and Dynamics of Sex-Biased Gene Expression in a Common Frog Population with Differentiated, Yet Homomorphic, Sex Chromosomes
Cited by: 22
Author(s): Wen‐Juan Ma, Paris Veltsos, Melissa A. Toups, Nicolas Rodrigues, Roberto Sermier, Daniel L. Jeffries, Nicolas Perrin
Software Mentions: 3
Published: over 6 years ago

10.3390/microorganisms9071423

Mycobiota in the Carposphere of Sour and Sweet Cherries and Antagonistic Features of Potential Biocontrol Yeasts
Cited by: 7
Author(s): Ramunė Stanevičienė, Juliana Lukša, Živilė Strazdaitė-Žielienė, Bazilė Ravoitytė, Regina Losinska-Sičiūnienė, Raimondas Mozūraitis, Elena Servienė
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-018-24425-9

A Novel S100A8/A9 Induced Fingerprint of Mesenchymal Stem Cells associated with Enhanced Wound Healing
Cited by: 22
Author(s): Abhijit Basu, Sadaf Munir, Medhanie Mulaw, Karmveer Singh, Diana Crişan, Anca Sindrilaru, Nicolai Treiber, Meinhard Wlaschek, Markus Huber‐Lang, Florian Gebhard, Karin Scharffetter‐Kochanek
Software Mentions: 3
Published: over 6 years ago

10.1186/s12870-020-02459-4

Reducing the nicotine content of tobacco by grafting with eggplant
Cited by: 5
Author(s): Mengjuan Ren, Mengyue Zhang, Huijuan Yang, Hongzhi Shi
Software Mentions: 3
Published: over 4 years ago

10.1186/s12882-018-1012-4

Fine needle aspirates of kidneys: a promising tool for RNA sequencing in native and transplanted kidneys
Cited by: 7
Author(s): Øystein Eikrem, Tedd Christian Walther, Arnar Flatberg, Vidar Beisvåg, Philipp Strauss, Mikael Farstad, Christian Beisland, Even Koch, Thomas Mueller, Hans-Peter Marti
Software Mentions: 3
Published: over 6 years ago

10.3390/jof7030219

Mold and Yeast-Like Fungi in the Seaside Air of the Gulf of Gdańsk (Southern Baltic) after an Emergency Disposal of Raw Sewage
Cited by: 8
Author(s): Małgorzata Michalska, Monika Kurpas, Katarzyna Zorena, Piotr Wa̧ż, Roman Marks
Software Mentions: 3
Published: almost 4 years ago

10.1186/s12864-018-4841-4

Genome sequence and population declines in the critically endangered greater bamboo lemur (Prolemur simus) and implications for conservation
Cited by: 16
Author(s): Melissa T. R. Hawkins, Ryan R. Culligan, Cynthia L. Frasier, Rebecca B. Dikow, Ryan A. Hagenson, Runhua Lei, Edward E. Louis
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-018-4785-8

Diversity and signature of small RNA in different bodily fluids using next generation sequencing
Cited by: 55
Author(s): Mohamed M. El-Mogy, Bernard Lam, Taha A. Haj-Ahmad, Shannon McGowan, Darrick L. Yu, Lucas Nosal, Nezar Rghei, Pamela D. Roberts, Yousef Haj-Ahmad
Software Mentions: 3
Published: over 6 years ago

Projects: cran: ggfortify

Papers Mentioning ggfortify 132