Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3390/cancers13163922

https://doi.org/10.3390/cancers13163922

Transcriptomic Profiling Reveals Novel Candidate Genes and Signalling Programs in Breast Cancer Quiescence and Dormancy

Cited by: 4
Author(s): Lewis A. Quayle, Amy Spicer, Penelope D. Ottewell, Ingunn Holen
Published: over 3 years ago

Software Mentions 13

bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: fgsea
Fast Gene Set Enrichment Analysis
Papers that mentioned: 150
bioconductor: GEOquery
Get data from NCBI Gene Expression Omnibus (GEO)
Papers that mentioned: 328
bioconductor: sva
Surrogate Variable Analysis
Papers that mentioned: 511
cran: cgdsr
R-Based API for Accessing the MSKCC Cancer Genomics Data Server (CGDS)
Papers that mentioned: 33
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
cran: jetset
One-to-One Gene-Probeset Mapping for Affymetrix Human Microarrays
Papers that mentioned: 8
cran: msigdbr
MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format
Papers that mentioned: 17
cran: survival
Survival Analysis
Papers that mentioned: 1,690
cran: survminer
Drawing Survival Curves using 'ggplot2'
Papers that mentioned: 1,473
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555
pypi: jetset
A framework for self-consistent modeling and fitting of astrophysical relativistic jets SEDs
Papers that mentioned: 8
pypi: survival
Add static script_dir() method to Path
Papers that mentioned: 1,690