cran: cgdsr | Projects | Ecosyste.ms: Papers

10.3389/fgene.2021.702072

Characterization of Modification Patterns, Biological Function, Clinical Implication, and Immune Microenvironment Association of m6A Regulators in Pancreatic Cancer
Cited by: 5
Author(s): Kun Fang, Hairong Qu, Jiapei Wang, Desheng Tang, Changsheng Yan, Jiamin Ma, Lei Gao
Software Mentions: 14
Published: over 3 years ago

10.3390/cancers13163922

Transcriptomic Profiling Reveals Novel Candidate Genes and Signalling Programs in Breast Cancer Quiescence and Dormancy
Cited by: 4
Author(s): Lewis A. Quayle, Amy Spicer, Penelope D. Ottewell, Ingunn Holen
Software Mentions: 13
Published: over 3 years ago

10.1002/1878-0261.12134

Tissue glycomics distinguish tumour sites in women with advanced serous adenocarcinoma
Cited by: 21
Author(s): Merrina Anugraham, Francis Jacob, Arun Everest‐Dass, Andreas Schoetzau, Sheri Nixdorf, Neville F. Hacker, Daniel Fink, Viola Heinzelmann‐Schwarz, Nicolle H. Packer
Software Mentions: 11
Published: about 7 years ago

10.7554/eLife.59442

Collagen-rich omentum is a premetastatic niche for integrin α2-mediated peritoneal metastasis
Cited by: 33
Author(s): Yen‐Lin Huang, Ching-Yeu Liang, Danilo Ritz, Ruimário Inácio Coelho, Dedy Septiadi, Manuela Estermann, Cécile Cumin, Natalie Rimmer, Andreas Schötzau, Mónica Núñez López, André Fedier, Martina Konantz, Tatjana Vlajnic, Diego Calabrese, Claudia Lengerke, Leonor David, Barbara Rothen‐Rutishauser, Francis Jacob, Viola Heinzelmann‐Schwarz
Software Mentions: 8
Published: about 4 years ago

10.3389/fendo.2021.712513

Construction of a Prognostic Risk Prediction Model for Obesity Combined With Breast Cancer
Cited by: 1
Author(s): Na Sun, Dandan Ma, Peng Gao, Yanling Li, Zexuan Yan, Zaihui Peng, Fei Han, Yi Zhang, Xiaowei Qi
Software Mentions: 7
Published: over 3 years ago

10.1038/s41598-018-34129-9

SAC3D1: a novel prognostic marker in hepatocellular carcinoma
Cited by: 37
Author(s): Myoung‐Eun Han, Jiyoung Kim, Ga Hyun Kim, Si Young Park, Yun Hak Kim, Sae‐Ock Oh
Software Mentions: 7
Published: about 6 years ago

10.7554/eLife.37925

Multiple tumor suppressors regulate a HIF-dependent negative feedback loop via ISGF3 in human clear cell renal cancer
Cited by: 22
Author(s): Lili Liao, Zongzhi Z. Liu, Lauren Langbein, Weijia Cai, Eunah Cho, Jie Na, Xiaohua Niu, Wei Jiang, Zhijiu Zhong, Wesley L. Cai, Geetha Jagannathan, Essel Dulaimi, Joseph R. Testa, Robert G. Uzzo, Yuxin Wang, George R. Stark, Jianxin Sun, Stephen C. Peiper, Yaomin Xu, Qin Yan, Haifeng Yang
Software Mentions: 6
Published: about 6 years ago

10.18632/oncotarget.20266

SLC2A2 (GLUT2) as a novel prognostic factor for hepatocellular carcinoma
Cited by: 58
Author(s): Yun Hak Kim, Dae Cheon Jeong, Kyoungjune Pak, Myoung‐Eun Han, Jiyoung Kim, Liangwen Liu, Hyun Jin Kim, Tae Woo Kim, Tae Hwa Kim, Dong Choon Hyun, Sae‐Ock Oh
Software Mentions: 6
Published: over 7 years ago

10.1186/s12920-019-0530-7

Novel secretome-to-transcriptome integrated or secreto-transcriptomic approach to reveal liquid biopsy biomarkers for predicting individualized prognosis of breast cancer patients
Cited by: 11
Author(s): John A. Ankney, Ling Xie, John A. Wrobel, Li Wang, Xian Chen
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.8421

Glycerophosphodiester phosphodiesterase 1 (GDE1) acts as a potential tumor suppressor and is a novel therapeutic target for non-mucin-producing colon adenocarcinoma
Cited by: 2
Author(s): Shen Qiu, Chen Lü, Hua Yang, Ming-Xia Ge, Wangxiao Xia, Qing‐Peng Kong, Gong‐Hua Li, Yanhong Gu
Software Mentions: 4
Published: almost 5 years ago

10.18632/oncotarget.10543

Epigenetic activation of <i>MGAT3</i> and corresponding bisecting GlcNAc shortens the survival of cancer patients
Cited by: 29
Author(s): Reto S. Kohler, Merrina Anugraham, Mónica Núñez López, Christina Xiao, Andreas Schoetzau, Timm Hettich, Goetz Schlotterbeck, André Fedier, Francis Jacob, Viola Heinzelmann‐Schwarz
Software Mentions: 4
Published: over 8 years ago

10.1038/bjc.2016.363

Aldo-keto reductases are biomarkers of NRF2 activity and are co-ordinately overexpressed in non-small cell lung cancer
Cited by: 31
Author(s): Annette MacLeod, Lourdes Acosta-Jimenez, Philip J. Coates, Michael McMahon, Frank Carey, Tadashi Honda, Colin J. Henderson, C. Roland Wolf
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pone.0125795

Predicting Human Genetic Interactions from Cancer Genome Evolution
Cited by: 18
Author(s): Xiaowen Lu, Wout Megchelenbrink, Richard A. Notebaart, Martijn A. Huynen
Software Mentions: 4
Published: over 9 years ago

10.1186/s13550-020-00632-2

A pan-cancer analysis of the clinical and genetic portraits of somatostatin receptor expressing tumor as a potential target of peptide receptor imaging and therapy
Cited by: 11
Author(s): Hyun-Jong Lee, Minseok Suh, Hongyoon Choi, Seunggyun Ha, Jin Chul Paeng, Gi Jeong Cheon, Keon Wook Kang, Dong Hoon Lee
Software Mentions: 3
Published: over 4 years ago

10.1186/s12859-016-0935-7

LowMACA: exploiting protein family analysis for the identification of rare driver mutations in cancer
Cited by: 16
Author(s): Giorgio Melloni, Stefano de Pretis, Laura Riva, Mattia Pelizzola, Arnaud Céol, Jole Costanza, Heiko Müller, Luca Zammataro
Software Mentions: 3
Published: almost 9 years ago

10.7717/peerj.6555

Identification of four hub genes associated with adrenocortical carcinoma progression by WGCNA
Cited by: 33
Author(s): Wangxiao Xia, Qin Yu, Gong‐Hua Li, Yaowen Liu, Fu-Hui Xiao, Libin Yang, Zia Ur Rahman, Haotian Wang, Qing‐Peng Kong
Software Mentions: 3
Published: almost 6 years ago

10.18632/oncotarget.20548

Gene network inherent in genomic big data improves the accuracy of prognostic prediction for cancer patients
Cited by: 21
Author(s): Yun Hak Kim, Dae Cheon Jeong, Kyoungjune Pak, Tae Sik Goh, Chi Seung Lee, Myoung Eun Han, Ji Young Kim, Liangwen Liu, Chi Dae Kim, Jeon Yeob Jang, Wonjae Cha, Sae Ock Oh
Software Mentions: 3
Published: over 7 years ago

10.3390/cancers11121967

Pannexin1 Is Associated with Enhanced Epithelial-To-Mesenchymal Transition in Human Patient Breast Cancer Tissues and in Breast Cancer Cell Lines
Cited by: 25
Author(s): Nour Jalaleddine, Layal El-Hajjar, Hassan Dakik, Abdullah Shaito, Jessica Saliba, Rémi Safi, Kazem Zibara, Marwan El-Sabban
Software Mentions: 3
Published: about 5 years ago

10.1002/cam4.2729

Jupiter microtubule‐associated homolog 1 (JPT1): A predictive and pharmacodynamic biomarker of metformin response in endometrial cancers
Cited by: 9
Author(s): Nicholas W. Bateman, Pang-ning Teng, Erica Hope, Brian L. Hood, Julie Oliver, Wei Ao, Ming Zhou, Guisong Wang, Domenic Tommarello, Katlin N. Wilson, Tracy Litzy, Kelly A. Conrads, Chad A. Hamilton, Kathleen M. Darcy, Yovanni Casablanca, G. Larry Maxwell, Victoria Bae‐Jump, Thomas P. Conrads
Software Mentions: 3
Published: about 5 years ago

10.1242/dmm.021105

From drug response profiling to target addiction scoring in cancer cell models
Cited by: 12
Author(s): Bhagwan Yadav, Peddinti Gopalacharyulu, Tea Pemovska, Suleiman A. Khan, Agnieszka Szwajda, Jing Tang, Krister Wennerberg, Tero Aittokallio
Software Mentions: 3
Published: about 9 years ago

10.18632/oncotarget.27880

High mRNA expression of LY6 gene family is associated with overall survival outcome in pancreatic ductal adenocarcinoma
Cited by: 4
Author(s): Eric Russ, Krithika Bhuvaneshwar, Guisong Wang, Benjamin Jin, Michele M. Gage, Subha Madhavan, Yuriy Gusev, Geeta Upadhyay
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12885-016-2659-5

Imaging-genomics reveals driving pathways of MRI derived volumetric tumor phenotype features in Glioblastoma
Cited by: 55
Author(s): Patrick Großmann, David Gutman, William D. Dunn, Chad A. Holder, Hugo J.W.L. Aerts
Software Mentions: 2
Published: over 8 years ago

10.7717/peerj.7946

High expression of HSP90 is associated with poor prognosis in patients with colorectal cancer
Cited by: 22
Author(s): Shuming Zhang, Shichao Guo, Zhangfu Li, Dan Li, Qimin Zhan
Software Mentions: 2
Published: about 5 years ago

10.3390/cancers12040787

mTORC2/Rac1 Pathway Predisposes Cancer Aggressiveness in IDH1-Mutated Glioma
Cited by: 17
Author(s): Yang Liu, Yanxin Lu, Aiguo Li, Orieta Celiku, Shichao Han, Mingyu Qian, Chunzhang Yang
Software Mentions: 2
Published: over 4 years ago

10.1093/database/baaa092

VarStack: a web tool for data retrieval to interpret somatic variants in cancer
Cited by: 2
Author(s): Morgan F Howard, Bruce Kane, Mary Lepry, Paul Stey, Ashok Ragavendran, Ece D Gamsiz Uzun
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41388-021-01784-8

Targeting autocrine amphiregulin robustly and reproducibly inhibits ovarian cancer in a syngeneic model: roles for wildtype p53
Cited by: 7
Author(s): Moshit Lindzen, Soma Ghosh, Ashish Noronha, Diana Drago, Nishanth Belugali Nataraj, Orith Leitner, Sílvia Carvalho, Einav Zmora, Sivan Sapoznik, Keren Bahar Shany, Keren Levanon, Dan Aderka, Belinda Sánchez Ramírez, Maik Dahlhoff, Iain A. McNeish
Software Mentions: 2
Published: over 3 years ago

10.18632/oncotarget.21947

B-CAN: a resource sharing platform to improve the operation, visualization and integrated analysis of TCGA breast cancer data
Cited by: 3
Author(s): Canhong Wen, Shao-Min Ou, Xinying Guo, Chen-Feng Liu, Yan-Bo Shen, Na You, Wentong Cai, Wen‐Jun Shen, Xueqin Wang, Hao Tan
Software Mentions: 2
Published: about 7 years ago

10.3390/cancers13102383

Reduced Lamin A/C Does Not Facilitate Cancer Cell Transendothelial Migration but Compromises Lung Metastasis
Cited by: 11
Author(s): Francesco Roncato, Ofer Regev, Sara W. Feigelson, Sandeep Kumar Yadav, Lukasz Kaczmarczyk, Nehora Levi, Diana Drago-García, Samuel Ovadia, Marina Kizner, Yoseph Addadi, João C. Sabino, Yossi Ovadya, Sérgio Fernandes de Almeida, Ester Feldmesser, Gabi Gerlitz, Ronen Alon
Software Mentions: 1
Published: over 3 years ago

10.3390/cancers12102910

Sphingolipid Pathway as a Source of Vulnerability in IDH1mut Glioma
Cited by: 12
Author(s): Tyrone Dowdy, Lumin Zhang, Orieta Celiku, Sriya Movva, Adrian Lita, Victor Ruiz‐Rodado, Mark R. Gilbert, Mioara Larion
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0166593

Aberrations in the Iron Regulatory Gene Signature Are Associated with Decreased Survival in Diffuse Infiltrating Gliomas
Cited by: 18
Author(s): Cody Weston, Joe Klobusicky, Jennifer Weston, James R. Connor, Steven Toms, Nicholas F. Marko
Software Mentions: 1
Published: about 8 years ago

10.1186/s13039-021-00553-2

The pattern of gene copy number alteration (CNAs) in hepatocellular carcinoma: an in silico analysis
Cited by: 4
Author(s): Arman Shahrisa, Maryam Tahmasebi Birgani, Hossein Ansari, Zahra Mohammadi, Vinicio Carloni, Javad Mohammadi Asl
Software Mentions: 1
Published: over 3 years ago

10.18632/oncotarget.24974

Mutant p53 tunes the NRF2-dependent antioxidant response to support survival of cancer cells
Cited by: 81
Author(s): Kamil Lisek, Elena Campaner, Yari Ciani, Dawid Walerych, Giannino Del Sal
Software Mentions: 1
Published: over 6 years ago

10.1186/s13048-019-0479-3

Overexpression of CCDC69 activates p14ARF/MDM2/p53 pathway and confers cisplatin sensitivity
Cited by: 14
Author(s): Long Cui, Fang Zhou, Chen Cui, Chi Chiu Wang
Software Mentions: 1
Published: almost 6 years ago

Ecosyste.ms: Papers

Projects: cran: cgdsr

Papers Mentioning cgdsr 33