Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.12688/f1000research.20843.1

https://doi.org/10.12688/f1000research.20843.1

Cited by: 51
Author(s): John Blischak, Peter Carbonetto, Matthew Stephens
Published: over 4 years ago

Software Mentions 22

cran: bookdown
Authoring Books and Technical Documents with R Markdown
Papers that mentioned: 3
cran: checkpoint
Install Packages from Snapshots on the Checkpoint Server for Reproducibility
Papers that mentioned: 1
cran: devtools
Tools to Make Developing R Packages Easier
Papers that mentioned: 157
cran: drake
A Pipeline Toolkit for Reproducible Computation at Scale
Papers that mentioned: 3
cran: git2r
Provides Access to Git Repositories
Papers that mentioned: 4
cran: knitr
A General-Purpose Package for Dynamic Report Generation in R
Papers that mentioned: 157
cran: modelDown
Make Static HTML Website for Predictive Models
Papers that mentioned: 1
cran: msigdbr
MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format
Papers that mentioned: 17
cran: packrat
A Dependency Management System for Projects and their R Package Dependencies
Papers that mentioned: 7
cran: ProjectTemplate
Automates the Creation of New Statistical Analysis Projects
Papers that mentioned: 3
cran: rmarkdown
Dynamic Documents for R
Papers that mentioned: 38
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
cran: switchr
Papers that mentioned: 2
cran: usethis
Automate Package and Project Setup
Papers that mentioned: 4
cran: workflowr
A Framework for Reproducible and Collaborative Data Science
Papers that mentioned: 7
pypi: conda
OS-agnostic, system-level binary package manager.
Papers that mentioned: 92
pypi: devtools
Python's missing debug print command, and more.
Papers that mentioned: 157
pypi: drake
Model-based design and verification for robotics
Papers that mentioned: 3
pypi: packrat
A server and Django storage backend for files you already have.
Papers that mentioned: 7
pypi: pandoc
Pandoc Documents for Python
Papers that mentioned: 9
pypi: rrtools
Raster Restoration tools
Papers that mentioned: 2
pypi: wflow
wflow hydrological modeling framework
Papers that mentioned: 1